BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46871.1
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915376 jgi|Araly1|915376|Al_scaffold_0008_127 340 2e-93
> Ahg915376 jgi|Araly1|915376|Al_scaffold_0008_127
Length=240
Score = 340 bits (184), Expect = 2e-93
Identities = 224/242 (93%), Gaps = 7/242 (3%)
Strand=Plus/Plus
Query 1 ATGAAGACCTCAGCTTTCTTCATCGCTGTATTGCTCATTCTATCATGCTCATCATCAATG 60
||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGAAGACCTCAGCTTTCTTCATTGTTGTATTGCTCATTCTATCATGTTCATCGTCAATG 60
Query 61 ATAATGGGAGTT-AGCTATCATGAGAACCGTTGCCATGACTGGGTAGATTGTGCTATATG 119
|||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ATAATGGGAGTTCA-CTATCATGAGAACCGTTGCCATGACTGGAAAGATTGTGCTATATG 119
Query 120 GTGCAAACAATGGGTTCCTCAACCAAAATGTATTAACCGTGTTTGCGATTGTAAGCCAAA 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 GTGCAAACAATGGGTTCCTCAACCAAAATGTATTAACCATGTTTGCGATTGTAAGCCAAA 179
Query 180 ATCTCTTCCGACCAACGACGAGATTCC-CAAATCGGCTTCTTC--C-AGTTCGAAGAACT 235
|||||||||||| |||||||||||||| ||| ||| ||||||| | | |||||| ||||
Sbjct 180 ATCTCTTCCGACTAACGACGAGATTCCTCAA-TCGACTTCTTCTTCCAATTCGAATAACT 238
Query 236 AA 237
||
Sbjct 239 AA 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8172287854
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5