BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G46873.1

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg330742 jgi|Araly1|330742|fgenesh1_pm.C_scaffold_8000085           327    1e-89


> Ahg330742 jgi|Araly1|330742|fgenesh1_pm.C_scaffold_8000085
Length=264

 Score =  327 bits (177),  Expect = 1e-89
 Identities = 201/213 (94%), Gaps = 0/213 (0%)
 Strand=Plus/Plus

Query  1    ATGAAATCAAACAAAGCAACCTTCTTCTTGGGCTTGTTGCTTGTATATGCTTTTTGTATA  60
            ||||||||||||||||| |||||||||||||||||||| ||||||| ||| || ||||||
Sbjct  1    ATGAAATCAAACAAAGCGACCTTCTTCTTGGGCTTGTTCCTTGTATCTGCCTTCTGTATA  60

Query  61   ATGTTGATAGAGAGTAGGTGTTACACAAACGACGATTGCAAAGACGGGCAACCATGTCCA  120
            | |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct  61   AGGTTGATAGAGAGTAGGTGTTACACAAACGACGATTGTAAAGACGCGCAACCATGTCCA  120

Query  121  GTGCCTCTTGCTTGTCTATTTGGCAGCTGCATTTGTCCATGGAAAAGTCAATCAAAATTA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct  121  GTGCCTCTTGCTTGTCTATTTGGCAGCTGCATTTGTCCATGGAAAAGTCGATCTAAGTTA  180

Query  181  CCAATTTGTCAAATCATATGTGCGAATTTGGAT  213
            |||||||||||||||||||||||| ||||||||
Sbjct  181  CCAATTTGTCAAATCATATGTGCGCATTTGGAT  213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7370334373


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5