BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46890.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value Ahg494287 jgi|Araly1|494287|fgenesh2_kg.8__103__AT5G46890.1 660 0.0 > Ahg494287 jgi|Araly1|494287|fgenesh2_kg.8__103__AT5G46890.1 Length=474 Score = 660 bits (357), Expect = 0.0 Identities = 442/482 (92%), Gaps = 10/482 (2%) Strand=Plus/Plus Query 1 ACACAACACATCAAAAGCTTGATAAAGAGAGAGTTTTTAGGGTTTTCTTGTACCTATTAT 60 ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct 1 ACACAACACATCACAAGCTCGATAAAGAGAGAGTTTTAAGGGTTTTCTTGTACCTTTTAT 60 Query 61 AAGAAATACTCTAACTGAAACTTTACTTC-TTCATCAATGGCTTATTCTAAGGTTGCCCT 119 ||||| |||||| | |||||||||||||| ||| |||||||||||||||||| |||| || Sbjct 61 AAGAATTACTCTTATTGAAACTTTACTTCTTTC-TCAATGGCTTATTCTAAGATTGCTCT 119 Query 120 TCTCCTCGTCTTCAATGTCATCTTCTTCACTTTCGTCAGCTCGACTTCGGTCCCTTGTCC 179 ||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 120 TCTCCTCCTCTTCAATGTCATCTTCTTCACTTTCGTCAGCTCGACATCAGTCCCTTGTCC 179 Query 180 ACCACCACCGCCCAAGAGCTACCACAAGAAGCCCGCAACGCC-ATCTCTTAAACCCACTT 238 ||||||||||||||||| ||| | || | || | || | | | |||||||||| Sbjct 180 ACCACCACCGCCCAAGA--AACC-C-TCAA--CTTCATCTCCTAAC-CACAAACCCACTT 232 Query 239 GTAAAGACGCTCTTAAACTTAAGGTATGTGCTAACGTGTTGGATGTGGTTAAGGTTTCTC 298 ||||||||||||||||||||||||| || ||||||||||||||| |||| |||||||||| Sbjct 233 GTAAAGACGCTCTTAAACTTAAGGTGTGCGCTAACGTGTTGGATTTGGTCAAGGTTTCTC 292 Query 299 TACCACCAACGTCCAACTGTTGCGCTCTTATCAAAGGTCTAGTTGATCTTGAAGCCGCGG 358 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 293 TACCACCAACGTCCAAATGTTGCGCTCTTATCAAAGGTCTAGTTGATCTTGAAGCGGCGG 352 Query 359 TCTGTCTTTGCACTGCCCTAAAGGCTAATGTTCTTGGTATCAACCTTAATGTTCCCATTT 418 ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 353 TCTGTCTTTGCACCGCCCTAAAGGCTAATCTTCTTGGTATCAACCTTAATGTTCCCATTT 412 Query 419 CTTTGAACGTTGTCCTAAACCATTGTGGTAAGAAGGTTCCATCTGGTTTCAAATGTGCCT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 CTTTGAACGTTGTCCTAAACCATTGTGGTAAGAAGGTTCCATCTGGTTTCAAATGTGCCT 472 Query 479 AG 480 || Sbjct 473 AG 474 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22721258532 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5