BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G46890.1

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494287 jgi|Araly1|494287|fgenesh2_kg.8__103__AT5G46890.1          660    0.0  


> Ahg494287 jgi|Araly1|494287|fgenesh2_kg.8__103__AT5G46890.1
Length=474

 Score =  660 bits (357),  Expect = 0.0
 Identities = 442/482 (92%), Gaps = 10/482 (2%)
 Strand=Plus/Plus

Query  1    ACACAACACATCAAAAGCTTGATAAAGAGAGAGTTTTTAGGGTTTTCTTGTACCTATTAT  60
            ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct  1    ACACAACACATCACAAGCTCGATAAAGAGAGAGTTTTAAGGGTTTTCTTGTACCTTTTAT  60

Query  61   AAGAAATACTCTAACTGAAACTTTACTTC-TTCATCAATGGCTTATTCTAAGGTTGCCCT  119
            ||||| |||||| | |||||||||||||| ||| |||||||||||||||||| |||| ||
Sbjct  61   AAGAATTACTCTTATTGAAACTTTACTTCTTTC-TCAATGGCTTATTCTAAGATTGCTCT  119

Query  120  TCTCCTCGTCTTCAATGTCATCTTCTTCACTTTCGTCAGCTCGACTTCGGTCCCTTGTCC  179
            ||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct  120  TCTCCTCCTCTTCAATGTCATCTTCTTCACTTTCGTCAGCTCGACATCAGTCCCTTGTCC  179

Query  180  ACCACCACCGCCCAAGAGCTACCACAAGAAGCCCGCAACGCC-ATCTCTTAAACCCACTT  238
            |||||||||||||||||   ||| |   ||  |  || | || | | |  ||||||||||
Sbjct  180  ACCACCACCGCCCAAGA--AACC-C-TCAA--CTTCATCTCCTAAC-CACAAACCCACTT  232

Query  239  GTAAAGACGCTCTTAAACTTAAGGTATGTGCTAACGTGTTGGATGTGGTTAAGGTTTCTC  298
            ||||||||||||||||||||||||| || ||||||||||||||| |||| ||||||||||
Sbjct  233  GTAAAGACGCTCTTAAACTTAAGGTGTGCGCTAACGTGTTGGATTTGGTCAAGGTTTCTC  292

Query  299  TACCACCAACGTCCAACTGTTGCGCTCTTATCAAAGGTCTAGTTGATCTTGAAGCCGCGG  358
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct  293  TACCACCAACGTCCAAATGTTGCGCTCTTATCAAAGGTCTAGTTGATCTTGAAGCGGCGG  352

Query  359  TCTGTCTTTGCACTGCCCTAAAGGCTAATGTTCTTGGTATCAACCTTAATGTTCCCATTT  418
            ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  353  TCTGTCTTTGCACCGCCCTAAAGGCTAATCTTCTTGGTATCAACCTTAATGTTCCCATTT  412

Query  419  CTTTGAACGTTGTCCTAAACCATTGTGGTAAGAAGGTTCCATCTGGTTTCAAATGTGCCT  478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  413  CTTTGAACGTTGTCCTAAACCATTGTGGTAAGAAGGTTCCATCTGGTTTCAAATGTGCCT  472

Query  479  AG  480
            ||
Sbjct  473  AG  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22721258532


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5