BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46910.1
Length=2394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948245 jgi|Araly1|948245|scaffold_800132.1 3504 0.0
> Ahg948245 jgi|Araly1|948245|scaffold_800132.1
Length=2200
Score = 3504 bits (1897), Expect = 0.0
Identities = 2069/2152 (96%), Gaps = 11/2152 (1%)
Strand=Plus/Plus
Query 253 TCTACTGTGAGAGGTGGCTTGATGAAGGAAAAAGTGGAGAAGCTTGAGACAGATGATCTA 312
|||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1 TCTACTGTGAAAGGTGGCTTGATGAAGGACAAAGTGGAGAAGTTTGAGACAGATGATCTA 60
Query 313 AAATGGACCGAGAGGCTTCCAGAATGTCCTGTCTACAGACCAACAAAGGAGGAGTTTGAG 372
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATGGACTGAGAGGCTTCCAGAATGTCCTGTCTACAGACCAACAAAGGAGGAGTTTGAG 120
Query 373 GATCCTCTGACTTATTTGCAGAAGATTTTCCCAGAAGCTTCAAAATATGGTATTTGCAAG 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATCCTCTGACTTATTTGCAGAAGATTTTCCCAGAAGCTTCAAAATATGGTATTTGCAAG 180
Query 433 ATTGTATCTCCTTTGACAGCAACAGTTCCTGCTGGCGCTGTGTTGATGAAAGAGAAATCA 492
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 181 ATTGTATCTCCGTTGACAGCAACAGTTCCCGCAGGCGCTGTGTTGATGAAAGAGAAATCA 240
Query 493 AACTTTAAGTTCACTACCAGAGTACAACCCCTTCGACTTGCTGAGTGGGATTCTGATGAT 552
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 241 AACTTTAAGTTCACTACCAGAGTACAACCCCTTCGACTCGCCGAGTGGGATTCTGATGAT 300
Query 553 AAAGTTACATTCTTCATGAGTGGGAGGACCTATACATTTCGCGACTATGAGAAAATGGCG 612
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 301 AAAGTTACATTTTTCATGAGTGGGAGGACCTATACATTTCGGGATTATGAGAAAATGGCA 360
Query 613 AACAAGGTATTTGCACGCAGATATTGCAGTGGTGGCTCTTTGCCCGACTCATTCTTGGAG 672
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACAAGGTATTTGCACGTAGATATTGCAGTGGTGGCTCTTTGCCCGACTCATTCTTGGAG 420
Query 673 AAAGAATTCTGGAAGGAAATTGCGTGTGGCAAGACTGAAACAGTTGAGTATGCGTGTGAT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAAGAATTCTGGAAGGAAATTGCGTGTGGCAAGACTGAAACAGTTGAGTATGCGTGTGAT 480
Query 733 GTAGATGGTAGCGCATTTTCATCTGCACCAGGTGACCCACTAGGAAGCAGCAAATGGAAC 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTAGATGGTAGCGCATTTTCATCTGCACCAGGTGACCCACTAGGAAGCAGCAAATGGAAC 540
Query 793 TTGAATAAAGTTTCAAGGCTTCCTAAGTCTACCCTGCGCCTTCTTGAAACATCCATTCCG 852
|||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||
Sbjct 541 TTGAATAAAGTTTCAAGGCTGCCGAAGTCTACCCTGCGCCTTCTTGGAACATCCATTCCG 600
Query 853 GGAGTCACAGAACCCATGCTTTACATCGGAATGCT-TTTCAGTATGTTTGCCTGGCATGT 911
|||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 601 GGAGTCACTGAACCCATGCTTTACATCGGAATGCTGTTT-AGTATGTTTGCCTGGCATGT 659
Query 912 TGAGGACCATTATTTGTACAGCATTAATTACCAACATTGTGGAGCATCAAAAACTTGGTA 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGAGGACCATTATTTGTACAGCATTAATTACCAACATTGTGGAGCATCAAAAACTTGGTA 719
Query 972 TGGGATTCCAGGTTCCGCAGCTCTAAAATTTGAAAAGGTGGTTAAAGAGTGTGTGTACAA 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGGATTCCAGGTTCCGCAGCTCTAAAATTTGAAAAGGTGGTTAAAGAGTGTGTGTACAA 779
Query 1032 TGATGATATTCTATCAACTAATGGAGAAGATGGTGCCTTTGACGTGCTTCTGGGGAAGAC 1091
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 780 TGATGATATTCTATCAACTAATGGAGAAGATGGAGCCTTTGACGTGCTTCTAGGGAAGAC 839
Query 1092 AACTATATTCCCCCCAAAGACTCTGTTGGATCATAATGTGCCAGTGTATAAAGCTGTGCA 1151
|||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 840 AACTATATTCCCCCCAAAGATTCTGTTGGATCATAATGTGCCAGTGTACAAGGCTGTGCA 899
Query 1152 AAAACCTGGAGAATTTGTTGTCACATTCCCCAGGGCTTATCATGCTGGTTTCAGCCACGG 1211
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 AAAACCTGGAGAATTCGTCGTCACATTCCCTAGGGCTTATCATGCTGGTTTCAGCCACGG 959
Query 1212 TTTTAATTGTGGTGAGGCAGTGAACTTTGCGATGGGTGATTGGTTTCCATTTGGAGCTAT 1271
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 960 TTTTAATTGTGGTGAGGCAGTGAACTTTGCGATGGGTGACTGGTTTCCTTTTGGAGCTAT 1019
Query 1272 TGCCAGTTGCCGGTATGCTCATCTTAACCGAGTACCGTTGCTTCCTCATGAAGAATTGAT 1331
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1020 AGCCAGTTGCCGGTATGCTCATCTTAACAGAGTACCATTGCTTCCTCATGAAGAATTGAT 1079
Query 1332 TTGTAAAGAGGCAATGCTCTTGAACTCAAGTTCCAAATCCGAGAATCTGGATCTTACACC 1391
||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1080 TTGTAAAGAAGCAATGCTCTTAAACTCAAGTTCCAAATCCGAGAATCTGGATTTTACACC 1139
Query 1392 TACAGAATTGTCAGGACAACGAAGCATCAAGACTGCATTTGTACACCTGATTCGTTTTCT 1451
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1140 TACAGAATTGTTAGGACAACGAAGCATCAAGACTGCATTTGTGCACCTGATTCGTTTTCT 1199
Query 1452 TCATCTTGCTCGATGGTCTCTAATGAAGTCAGGATTATGCACAGGCCTTGTTTCGAATAC 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TCATCTTGCTCGATGGTCTCTAATGAAGTCAGGATTATGCACAGGCCTTGTTTCGAATAC 1259
Query 1512 ATATGGAACCATAGTCTGCAGTTTGTGTAAACGGGATTGCTATTTGGCATTTATCAACTG 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ATATGGAACCATAGTCTGCAGTTTGTGTAAACGGGATTGCTATTTGGCATTTATCAACTG 1319
Query 1572 CGAGTGTTACTCACACCCCGTTTGTCTACGTCATGATGTTAAAAAGCTTGACCTTCCATG 1631
||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct 1320 CGAGTGTTACTCACATCCCGTCTGTCTCCGTCATGATATTAAAAAGCTTGACCTTCCATG 1379
Query 1632 TGGGACAACGCATACTCTTTACTTGAGAGACAACATTGAAGACATGGAAGCTGCTGCAAT 1691
||||||||| | |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1380 TGGGACAACACGTACTCTTTACTTGAGAGATAACATTGAAGACTTGGAAGCTGCTGCAAT 1439
Query 1692 GAAGTTTGAGAAGGAAGATGGAGTTTCAGATTTGATTACAACTGATGAAGATTTATATAA 1751
|||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1440 GAAGTTTGAGAAAGAAGATGTAGTTTCAGATTTGATTACAACTGATGAAGACTTATATAA 1499
Query 1752 GTATCCATCATCGATTACACTTCCAGCTGCGAAAGAAGACGGATATACACCGTATTCCAC 1811
|||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1500 GTATCCATCATCAATTACACTTCCAGCTGCGAAAGAAGATGGATATTCACCGTATTCCAC 1559
Query 1812 TATATACTTTGATTTCTATACTGAGGTAGAGATGACATCTCATGACCAGTTGCAATCGGG 1871
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1560 TATATACTTTGATTTCTATACCGAGGTAGAGATGACATCTCATGACCAGTTGCAATCTGG 1619
Query 1872 AAATCCCGTCATGAGTTATGAGGCAAACGCTTCATGTATCTCCTCAGTTGCTGATGATTA 1931
|||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AAATTCCGTCATGAGCTATGAAGCAAACGCTTCATGTATCTCCTCAGTTGCTGATGATTA 1679
Query 1932 TGAATGCTCTGATTACGTAAATAGACGAGCTAACTGTAGCAGCAGTAGTGATTCAAAGCT 1991
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1680 TGAATGCTCTGATTACGTAAATAGACGAGCTAACTGTAGCAGCAGTAGTGATTCAAAGTT 1739
Query 1992 CTCGGAAGAAGTAGCATGCAGCAGTAGCaaaaaaaCTCGGTTCTTCCCTGTGGTTCAAGA 2051
||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1740 CTCAGAAGAAGTAGCATGCAGCAGTAACAAAAAAACTCGGTTCTTCCCTGCGGTTCAAGA 1799
Query 2052 TGAACAAC---TAGTTGCGGATCAGGAAAGTGATGGATCTGATTCCGAGTGTTTTAGAGT 2108
|||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1800 TGAACAACAACTAGTCGCGGATCAGGAAAGTGATGGATCTGATTCCGAGTGTTTCAGAGT 1859
Query 2109 CAAACGCCGTTCTTCATTGAAGTTTGAGAACCGAACAGTTGTTCTAGACACAAGAGAGTC 2168
||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 1860 CAAACGCCGTTCTTCGTTGAAGTTTGAGAACCGAACAGTTGTTGTCGACACAAGAGATTA 1919
Query 2169 TGACCATCATCAGGAACTTAAGAGACTGAAGAAATCGCATCATCACGAAGGAAGATATAG 2228
||||||||||||||| ||||| || ||||||||||||| |||||||||||||||||||||
Sbjct 1920 TGACCATCATCAGGAGCTTAAAAGGCTGAAGAAATCGCTTCATCACGAAGGAAGATATAG 1979
Query 2229 TAGTAGCAGTAGTGTTAGTAGGCAAGAAGAAGAAGAAGATGA-G---T-T-AGTAATTTC 2282
||||||||||||||||||||||||||||||||||||||| || | | | |||||||||
Sbjct 1980 TAGTAGCAGTAGTGTTAGTAGGCAAGAAGAAGAAGAAGAAGAAGAAGTGTTAGTAATTTC 2039
Query 2283 AAACAGGAAAGAAACTCAGCAACAAAGTGACGTGAAGATGCAGAAGAAGAGGATCGAGAA 2342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 AAACAGGAAAGAAACTCAGCAACAAAGTGACGTGAAGATGCAGAAGAAGAGGATCGAGAA 2099
Query 2343 TCATTTTGGTGGCTTTAAACGTCTGAAAGTGAAAGGGCTAATAAAGCCGTAA 2394
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 TCAGTTTGGTGGCTTTAAACGTCTGAAAGTGAAAGGGCTAATAAAGCCGTAA 2151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90197700160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5