BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46915.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480792 jgi|Araly1|480792|fgenesh2_kg.3__3493__AT2G16210.1 573 7e-163
Ahg330738 jgi|Araly1|330738|fgenesh1_pm.C_scaffold_8000081 508 2e-143
Ahg931793 jgi|Araly1|931793|scaffold_304250.1 231 5e-60
Ahg906307 jgi|Araly1|906307|Al_scaffold_0003_3435 115 5e-25
> Ahg480792 jgi|Araly1|480792|fgenesh2_kg.3__3493__AT2G16210.1
Length=1124
Score = 573 bits (310), Expect = 7e-163
Identities = 494/578 (85%), Gaps = 31/578 (5%)
Strand=Plus/Plus
Query 283 GATGGGAAGGAGATGATGCAACCTCCACAA-CCTAGAGCCTTCTTGGCATCTTCAAGTCG 341
|||||||| |||||||||||||||||| || || |||||||||||||| |||||||||||
Sbjct 388 GATGGGAAAGAGATGATGCAACCTCCAAAATCC-AGAGCCTTCTTGGCTTCTTCAAGTCG 446
Query 342 TATTAGAAGATTCAGAACAGAACAAGGGGAAGATGACAAGAAGGAAGAGGTGGTGTCTGA 401
| | ||| ||||||||||| |||||||||| |||||||||||| ||| | |
Sbjct 447 ---T-----A-TCAAAACAGAACAAGAGGAAGATGACTTGAAGGAAGAGGTAGTG-GT-A 495
Query 402 GTCAAGTAATCGTGGCCGGACAACCGCAGCTGAATCTGTTGGAAGGAAGCTCAAACTTGG 461
|| ||| ||||||| || |||||||||||||||| |||||| |||||||| |||||
Sbjct 496 -TCTTCTAACCGTGGCCCGAAAACCGCAGCTGAATCTAATGGAAGAAAGCTCAACCTTGG 554
Query 462 GAAGAAGGCAGCTGAGGAATCCCAAGAA-TCTAAAAGGACCGAGAAAGTGGTTAGAGCCC 520
||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||| |
Sbjct 555 GAAGAAGGCAGCTAAGGAATCCCAA-AATTCTAAAAGGACCGAGAAAGTGGTTAAAGCAC 613
Query 521 GAAGAGATGAGGCAGGTGCCTCTTCATCTACTGCTGTAGAATTCACGGCCGTATTCCAGC 580
|||||||| | || ||||| |||||||||||||||| ||||||||| | | ||| |||
Sbjct 614 GAAGAGATTACGCTGGTGCATCTTCATCTACTGCTGCAGAATTCACCATCTTCTTCAAGC 673
Query 581 CAGCATATCTCTACAAT-CTGAGGAT-CCGAAGTTCTG-T--TAAGGATCAAATGCCGGT 635
|| ||||||| | | | |||||||| ||||| | ||| | |||||||| |||||||
Sbjct 674 AAGGATATCTC-ATATTCCTGAGGATCCCGAA-TACTGTTGCTAAGGATCTTATGCCGGA 731
Query 636 TGAGAAAACAATATTCAAAG-TCCATCATCCAAATGGGAAGAAATTTTGGAATGTGGTGT 694
|||||||||||||||| ||| ||||||| |||||||||||||||| ||||||||||| |
Sbjct 732 TGAGAAAACAATATTC-AAGATCCATCACCCAAATGGGAAGAAATCATGGAATGTGGTTT 790
Query 695 ATCTGGGGA-GTTATGGAGCTTTCTCTGGTGGATGGCAATGTTTGGTTAAAGAGTATCCC 753
|||||| || ||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 791 ATCTGGTGAGGTT-TGGAGCTTTCTCTGGTGGATGGCGACGTTTGGTTAAAGAGTATCCC 849
Query 754 CTTGTTGTTGGGGATATATACCTGCAAGTTTACATTCATCAAACCGGAGGAGCTACTTCT 813
||||||||||||| |||||||||| ||| ||||||||||||| || |||||||||||
Sbjct 850 CTTGTTGTTGGGG----ATACCTGCAAATTTTCATTCATCAAACCAGATGAGCTACTTCT 905
Query 814 AGTTGTCTCCAAACCCTAATGATGATGGATGTGAGGGT 851
|||||||||||||||||||||||||||||||| |||||
Sbjct 906 AGTTGTCTCCAAACCCTAATGATGATGGATGTTAGGGT 943
> Ahg330738 jgi|Araly1|330738|fgenesh1_pm.C_scaffold_8000081
Length=870
Score = 508 bits (275), Expect = 2e-143
Identities = 472/560 (84%), Gaps = 42/560 (8%)
Strand=Plus/Plus
Query 283 GATGGGAAGGAGATGATGCAACCTCCACAA-CCTAGAGCCTTCTTGGCATCTTCAAGTCG 341
|||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||
Sbjct 343 GATGGGAAGGAGATGATGCAACCTCCACAATCC-AGAGCCTTGTTGGCTTCTTCAAGTCG 401
Query 342 TATTAGAAGATTCAGAACAGAACAAGGGGAAGATGACAAGAAGGAAGAGGTGGTGTCTGA 401
| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 402 ---T------TTCAAAACTGAACAAGGGGAAGATGACAAGAAGGAAGAGGTGGTGTCTGA 452
Query 402 GTCAAGTAATCGTGGCCGGACAACCGCAGCTGAATCTGTTGGAAGGAAGCTCAAACTTGG 461
|| ||| |||||||| |||||||||||||||||||| |||||| |||||||| ||| |
Sbjct 453 GTTGAGTGATCGTGGCAGGACAACCGCAGCTGAATCTAATGGAAGAAAGCTCAACCTTAG 512
Query 462 GAAGAAGGCAGCTGAGGAATCCCAAGAATCTAAAAGGACCGAGAAAGTGGTTA-GAGCCC 520
|||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct 513 GAAGAAGGCAGCTGAGGAGTCCCAAGAATCTAAAAGGACCGAGAAA----TTAGGAGCCT 568
Query 521 GAAGAGATGAGGCAGGTGCCTCTTCATCTACTGCTGTAGAATTCA-CGGCCGTATTCCAG 579
| || | || | | ||| ||||||||| |||||||| | | | ||||| ||
Sbjct 569 TTTCA-TTG-GTCA--T---T-TTC-TCTACTGCTACAGAATTCACCAG-CTTATTCAAG 618
Query 580 CCAGCATATCTCTACAA-T-CTGAGGATCCGAAGTTCTG-T--TAAGGATCAAATGCCGG 634
| || |||||| | || | |||||| |||||| ||||| | ||||||||| |||||||
Sbjct 619 CAAGGGTATCTC-A-AATTCCTGAGGCTCCGAACTTCTGTTGCTAAGGATCATATGCCGG 676
Query 635 TTGAGAAAACAATATTCAAAGTCCATCATCCAAATGGGAAGAAATTTTGGAATGTGGTGT 694
|||||||||||| |||||| ||||||| |||||||||||||||| |||| ||||||| |
Sbjct 677 ATGAGAAAACAATGTTCAAAATCCATCACCCAAATGGGAAGAAATGTTGGGATGTGGTTT 736
Query 695 ATCTGGGGA-GTTATGGAGCTTTCTCTGGTGGATGG-CAATGTTTGGTTAAAGAGTATCC 752
|| |||||| ||| ||||| |||||||||||||||| | | |||||||||||||||||||
Sbjct 737 ATTTGGGGAGGTT-TGGAGTTTTCTCTGGTGGATGGTC-ACGTTTGGTTAAAGAGTATCC 794
Query 753 CCTTGTTGTTGGGGATATATACCTGCAAGTTTACATTCATCAAACCGGAGGAGCTACTTC 812
|||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 795 CCTTGTTGTTGGAGATA----CCTGCAAATTTACATTCATCAAACCAGAGGAGCTACTTC 850
Query 813 TAGTTGTCTCCAAACCCTAA 832
|||||||||| |||||||||
Sbjct 851 TAGTTGTCTCAAAACCCTAA 870
> Ahg931793 jgi|Araly1|931793|scaffold_304250.1
Length=247
Score = 231 bits (125), Expect = 5e-60
Identities = 166/185 (90%), Gaps = 6/185 (3%)
Strand=Plus/Plus
Query 669 TGGGAAGAAATTTTGGAATGTGGTGTATCTGGGGA-GTTATGGAGCTTTCTCTGGTGGAT 727
||||||||||| ||||||||||| ||||| |||| ||| ||||||||||||| ||||||
Sbjct 68 TGGGAAGAAATCATGGAATGTGGTTTATCTAGGGAGGTT-TGGAGCTTTCTCTAGTGGAT 126
Query 728 GGCAATGTTTGGTTAAAGAGTATCCCCTTGTTGTTGGGGATATATACCTGCAAGTTTACA 787
||| ||| |||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 127 GGCGCTGTGTGGTTAAAGAGTATCCCCTTGTTGTTGGGG----ATACCTGCAAATTTACA 182
Query 788 TTCATCAAACCGGAGGAGCTACTTCTAGTTGTCTCCAAACCCTAATGATGATGGATGTGA 847
||||||||||| || |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 183 TTCATCAAACCAGACGAGCTACTTCTAGTTGTCTCCAAACCCTAATGATAATGTATGTGA 242
Query 848 GGGTG 852
|||||
Sbjct 243 GGGTG 247
> Ahg906307 jgi|Araly1|906307|Al_scaffold_0003_3435
Length=720
Score = 115 bits (62), Expect = 5e-25
Identities = 98/114 (86%), Gaps = 8/114 (7%)
Strand=Plus/Plus
Query 283 GATGGGAAGGAGATGATGCAACCTCCACAA-CCTAGAGCCTTCTTGGCATCTTCAAGTCG 341
|||||||||||||||||||||||||||||| || || |||||||||| |||||||| ||
Sbjct 274 GATGGGAAGGAGATGATGCAACCTCCACAATCC-AGTTCCTTCTTGGCTTCTTCAAGCCG 332
Query 342 TATTAGAAGATTCAGAACAGAACAAGGGGAAGATGACAAGAAGGAAGAGGTGGT 395
| || | || |||||||||| ||||||||||||||||||||||||||||
Sbjct 333 TGGTA-----T-CAAAACAGAACAAAGGGAAGATGACAAGAAGGAAGAGGTGGT 380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5