BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46930.1
Length=537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948241 jgi|Araly1|948241|scaffold_800128.1 837 0.0
> Ahg948241 jgi|Araly1|948241|scaffold_800128.1
Length=582
Score = 837 bits (453), Expect = 0.0
Identities = 509/537 (95%), Gaps = 0/537 (0%)
Strand=Plus/Plus
Query 1 ATGAAATTCTCGCTTTACCTTGTTATGTTCTTTCTCCTCTTAAACTGTTTCGCAACCGCA 60
|||||||||| |||||||||||||||||| ||||||| |||||| |||| ||||||||||
Sbjct 21 ATGAAATTCTTGCTTTACCTTGTTATGTTTTTTCTCCCCTTAAATTGTTGCGCAACCGCA 80
Query 61 CAATCTCTGATTCGGGATTCTTGCAAAAAAGCTACAACTAAAGACCCGAAACTCAAATAT 120
|||||||||||||| ||||||||||| |||||| || ||| ||||||||||||||||||
Sbjct 81 CAATCTCTGATTCGAGATTCTTGCAAGAAAGCTGCAGCTACAGACCCGAAACTCAAATAC 140
Query 121 GATTTTTGCGTCAAGTCTCTCGAAGAGAATCCGCAGAGCAAAACCGCAAAGAGTCTTGAA 180
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 141 GATTTCTGCGTCAAGTCTCTTGAAGAGAATCCGCAGAGCAAAACCGCAAAAAGTCTTGAA 200
Query 181 GGTTTGGTCTTCGTATCGACCAAGAACGCTGTTTCGAAAACGACTAGCTTGAAAGGAATG 240
|| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 201 GGATTGGTCTTCGCATCGACCAAGAACGCTGTTTCGAAAACGACGAGCTTGAAAGGAATG 260
Query 241 GTTGACAAGATTCTCAAGGAGGATAAATATGAAGTGGAGAGGCCGTTACTTGATTGCCTC 300
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 261 GTTGACAAGATTCTCAAGGAGGATAAATATGAAGTGGAGAGGCCGTTACGTGATTGTCTC 320
Query 301 GAACTTTATACCGAAGCTATTGATTCCTTAAACCAATCTTTAGACACTGTTAAGTCGCGT 360
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 321 GAGCTTTATACCGAAGCTATTGATTCCTTAAACCAATCTTTAGACACCGTTAAGTCGCGT 380
Query 361 GATTACAAAACAGCTACCATGCTTATGAGTGCTGCAATGGATGCACCGGGAAGTTGCGAA 420
||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 381 GATTACAAAACCGCTACCATGCTTATGAGTGCTGCAATGGATGCACCAGGAAATTGCGAA 440
Query 421 ACTAAATTCACaaaaagaaaaaaGGCTGTGAAATCTCCATTTACGAAAGAGAACGATGTC 480
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 AGTAGATTCACAAAAAGAAAAAAGGCTGTGAAATCTCCATTTACGAAAGAGAACGATGTC 500
Query 481 TTGTTTTACATGGTTCTGATTCCTATAGCTTTTACAAGTATGTTAGATATGAAATAA 537
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 501 TTGTTTCACATGGTTCTGATTCCTATAGCTTTTACAAATATGTTAGATATGAAATAA 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19573817157
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5