BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46940.1
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494284 jgi|Araly1|494284|fgenesh2_kg.8__100__AT5G46940.1 948 0.0
> Ahg494284 jgi|Araly1|494284|fgenesh2_kg.8__100__AT5G46940.1
Length=615
Score = 948 bits (513), Expect = 0.0
Identities = 583/617 (94%), Gaps = 4/617 (1%)
Strand=Plus/Plus
Query 33 TGCTTCCTCAAAGAAAAGAAAAATGAAATTTTTGCTTTACCTTGTTACGTTCTTTGTTCT 92
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGCTTCCTTAAAGAAAAGAAAAATGAAATTTTTGCTTTACCTTGTTACGTTCTTTGTTCT 60
Query 93 CTCAAACGGTTTGGCAAACGGACAAACTTTGATTCGAAATTCTTGCAAGAAAGCTACAGC 152
|| ||||||||| |||| || |||||| ||||||||||||||||||| |||||| ||||
Sbjct 61 CTTAAACGGTTTCGCAACCGCTCAAACTCTGATTCGAAATTCTTGCAAAAAAGCTGCAGC 120
Query 153 TACAAGCCCGAAGTTCAAATACAATCTATGTGTCACGTCTCTCGAAACCAATCCGCAG-G 211
||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 121 TACAAACCCGAAGTTCAAATACAATCTATGCGTCACGTCTCTCGAAACAAATCCGCAGAG 180
Query 212 CCAAAACCGCAAAAGATCTCGCCGGATTAGTCATGGCATCGACGAAAAACGCCGTGACCA 271
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 -CAAAGCCGCAAAAGATCTCGCCGGATTAGTCATGGCATCGACGAAAAACGCCGTGACTA 239
Query 272 AAGCGACGACCTTGAAAGGAACTGTTGACAAGATTATCAAGGGGAAGAAAGTTAACAAGA 331
||||||| | |||||||||||| |||||||||||| |||| ||||||||| |||||||||
Sbjct 240 AAGCGACTAGCTTGAAAGGAACCGTTGACAAGATTCTCAAAGGGAAGAAATTTAACAAGA 299
Query 332 TGACTGCA-ATGCCGTTACGTGATTGCCTTCAGCTTTATACCGATGCTATTGGTTCTTTA 390
|||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 TGACTG-AGATGCCGTTACGTGATTGCCTCCAGCTTTATACCGATGCTATTGGTTCTTTA 358
Query 391 AACGAAGCTTTAGCGGGCGTTAAATCGCGTAATTACCCAACCGTTAAAACGGTTCTGAGT 450
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AACGAAGCTTCAGCGGGCGTTAAATCGCGTAATTACCCAACCGTTAAAACGGTTCTGAGT 418
Query 451 GCTGCAATGGATACACCAAGTACTTGTGAAACTGGATTCAAAGAAAGAAAAGCGCCATCT 510
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCTGCAATGGATGCACCAAGTACTTGTGAAACTGGATTCAAAGAAAGAAAAGCGCCATCT 478
Query 511 CCGGTTACGAAAGAGAACGATAATTTGTATCAGATGATTCTGATTCCTCTAGCTTTTACA 570
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 479 CCCGTTACGAAAGAGAACGATAATTTGTATCAGATGATTCTGATTCCTTTAGCTTTTACA 538
Query 571 AATATGTTGAAATGAAATCACCAAAAATTGTATTAACACATCGGATTAAAGATAATAGTA 630
|||||||||||||||||| || ||||| ||||||||||||| ||||||||||||||| ||
Sbjct 539 AATATGTTGAAATGAAATTACTAAAAAGTGTATTAACACATTGGATTAAAGATAATAATA 598
Query 631 CTGATAATGTACCTTAG 647
|||||||||||||||||
Sbjct 599 CTGATAATGTACCTTAG 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23712454374
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5