BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46960.1
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948239 jgi|Araly1|948239|scaffold_800126.1 660 0.0
Ahg494284 jgi|Araly1|494284|fgenesh2_kg.8__100__AT5G46940.1 183 9e-46
> Ahg948239 jgi|Araly1|948239|scaffold_800126.1
Length=565
Score = 660 bits (357), Expect = 0.0
Identities = 501/569 (88%), Gaps = 15/569 (3%)
Strand=Plus/Plus
Query 18 CTCAAAGTGAAAACAA-AAAATGAAGTTCTTGGTTTCATTGGTTATCTTCTCTCTTTTCT 76
|||||||| |||| || ||||||||||| |||||||||||||||||| ||||| ||||||
Sbjct 1 CTCAAAGTAAAAAAAATAAAATGAAGTTGTTGGTTTCATTGGTTATCGTCTCTATTTTCT 60
Query 77 TAAACGGTTTCGCAACCGCTCAAACTCTCATTCAAGATTCTTGCAAGAAAGCTTTTGCGA 136
| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 61 TGAACGGTTTCGCAACCGCTCAAACTCTCATTGAAGATTCTTGCAAGAAAGCTTTCGCGA 120
Query 137 AAGACCCGCAATTGTCATACGATTTCTGCGTCAATTCTCTTACACAAGATCCACAAAGCA 196
|||||||||| || ||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct 121 AAGACCCGCAGGTGACATACGAGTTCTGCGTCAAGTCTCTTACAGAAGATCCACAAAGCA 180
Query 197 AAGCCGCGACTACTCTCGAAAGTTTGGTCCTAGCATCGACGAAGACCGCTGCGGCAAAAA 256
|||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||
Sbjct 181 AAGCCGCGACTACTCTCGAAGGTTTGCTCCTAGCATCGACGAAGAACGCTGCAGCAAAAT 240
Query 257 TCACGAACTTGAAAGGAATCGTTGCA-CAGGATCTCAAAGACCAGAGATAT-CAGGATAT 314
| || ||| |||||||| ||||| || || ||| |||| ||| |||||||| | | ||||
Sbjct 241 TTACAAACATGAAAGGAGTCGTT-CAACAAGATATCAAGGACAAGAGATATGCTG-ATAT 298
Query 315 TGTGGAAGACTTAAAACTT-TGCCTCGGATTTTATAACGATGCTAATGATGATTTAA-CA 372
||||| | ||| ||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct 299 TGTGGGATTGTTACG-CTTATGCCTCGGATTTTATGACGATGCTAATGATGATTTAAACA 357
Query 373 ACTGCTTTAGCGAACATTAAATCGCGTGATTATCAAGGCGCTAACATTAATCTGAGTGCT 432
|||||||| |||| || |||||| ||||||| |||||||||||||||||||||||||
Sbjct 358 -CTGCTTTAAAGAACGTTCAATCGCATGATTATGAAGGCGCTAACATTAATCTGAGTGCC 416
Query 433 GCTTTGGATGTACCAGGCAATTGCGAGGATG-ATTTCAAGGAAG-CAAAAAAGACGTCTC 490
||| |||||||| | |||||||||||||||| ||| |||||||| |||||| || |||||
Sbjct 417 GCTCTGGATGTATCGGGCAATTGCGAGGATGCATT-CAAGGAAGACAAAAA-GAAGTCTC 474
Query 491 CGATTACCAACGAGAAC-AGTATTTTGTTTAAGACGATTTTGATTCCTTTGGCTTTTACT 549
||||||| | |||||| | |||||||| ||||| | |||||||||||||||||||||||
Sbjct 475 CGATTACTACCGAGAATGA-TATTTTGTATAAGAAGGTTTTGATTCCTTTGGCTTTTACT 533
Query 550 AATATGTTGTAATAAATTTATCAAAGTGT 578
|||||||||| ||||||||||||||||||
Sbjct 534 AATATGTTGTGATAAATTTATCAAAGTGT 562
> Ahg494284 jgi|Araly1|494284|fgenesh2_kg.8__100__AT5G46940.1
Length=615
Score = 183 bits (99), Expect = 9e-46
Identities = 418/566 (74%), Gaps = 45/566 (8%)
Strand=Plus/Plus
Query 26 GAAAACAAAAAATGAAGTTCTTGGTTT-CATTGGTTATC-TTCTCTCTTTTCTTAAACGG 83
||||| ||||||||| || ||| ||| | || |||| | |||| | || ||||||||||
Sbjct 13 GAAAA-GAAAAATGAAATTTTTGCTTTACCTT-GTTA-CGTTCTTTGTTCTCTTAAACGG 69
Query 84 TTTCGCAACCGCTCAAACTCTCATTC-AAGATTCTTGCAAGAAAGCTTTTGCGA-AAGAC 141
||||||||||||||||||||| |||| || |||||||||| |||||| || | || ||
Sbjct 70 TTTCGCAACCGCTCAAACTCTGATTCGAA-ATTCTTGCAAAAAAGCTGCAGCTACAA-AC 127
Query 142 CCGCAATTGTCA--TACGATTTCTGCGTCAATTCTCTT-ACACAAGATCCACAAAGCAAA 198
||| || | ||| ||| || | ||||||| ||||| | |||| |||| || ||||||
Sbjct 128 CCG-AAGT-TCAAATACAATCTATGCGTCACGTCTCTCGAAACAA-ATCCGCAGAGCAAA 184
Query 199 GCCGCGACT-ACTCTCGAAAGTTTGGTCCTAGCATCGACGAAGACCGCTGCGGCAAAAAT 257
||||| | | ||||| | || ||| | ||||||||||| | ||| | | | |||
Sbjct 185 GCCGCAAAAGA-TCTCGCCGGATTAGTCATGGCATCGACGAAAAACGCCGTGACTAAAG- 242
Query 258 C-ACGAACTTGAAAGGAATCGTTGCACAGGAT-CTCAAAGACCAGAGATAT--CAGGAT- 312
| || | ||||||||||| ||||| ||| ||| ||||||| ||| || | || |||
Sbjct 243 CGACTAGCTTGAAAGGAACCGTTG-ACAAGATTCTCAAAGGGAAGAAATTTAACAAGATG 301
Query 313 ATTGTGGAAGAC-TTAAAACTTTGCCTCG-GATTTTATAACGATGCTAATGATGATTTAA 370
| || | | | | ||| ||||||| | ||| ||| |||||||| || | |||||
Sbjct 302 ACTGAG-ATGCCGTTACGTGATTGCCTCCAGCTTT-ATACCGATGCTATTGGTTCTTTAA 359
Query 371 -C-AACTGCTTTAGCGAACATTAAATCGCGTGATTATC-AAGGCGCTAACATTAATCTGA 427
| || |||| |||| | ||||||||||| |||| | || || ||| | |||||
Sbjct 360 ACGAA--GCTTCAGCGGGCGTTAAATCGCGTAATTACCCAAC-CGTTAAAACGGTTCTGA 416
Query 428 GTGCTGCTTTGGATGTACCAGGCAATTGCGAGGA-TG-ATTTCAAGGAA-GCAAAAAAGA 484
||||||| |||||| |||| | | ||| || | || ||| ||| ||| | |||| |
Sbjct 417 GTGCTGCAATGGATGCACCAAGTACTTGTGAA-ACTGGATT-CAAAGAAAG-AAAAGCGC 473
Query 485 CGTCTCC-GATTACCAACGAGAAC-AGTATTTTGTTTAAGACGATTTTGATTCCTTTGGC 542
| ||||| | |||| || |||||| | || ||||| | ||| |||| |||||||||| ||
Sbjct 474 CATCTCCCG-TTACGAAAGAGAACGA-TAATTTGTATCAGATGATTCTGATTCCTTTAGC 531
Query 543 TTTTACTAATATGTTGTAAT-AAATT 567
|||||| ||||||||| ||| |||||
Sbjct 532 TTTTACAAATATGTTGAAATGAAATT 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22187537694
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5