BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G46970.1

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948238 jgi|Araly1|948238|scaffold_800125.1                        726    0.0  


> Ahg948238 jgi|Araly1|948238|scaffold_800125.1
Length=584

 Score =  726 bits (393),  Expect = 0.0
 Identities = 459/492 (93%), Gaps = 0/492 (0%)
 Strand=Plus/Plus

Query  1    ATGACGTTCTTGTTCTATTTTGCTATGTTCTTTCTGCTCTTAAACGCTTTCACAATTGCA  60
            |||||||||||| ||||  ||| |||||||||||||||||||||||||||| |||| |||
Sbjct  24   ATGACGTTCTTGCTCTACCTTGTTATGTTCTTTCTGCTCTTAAACGCTTTCGCAATGGCA  83

Query  61   CAATCTTTGATCCAAGATTTTTGCAAGAAAGCTGCAGATAAAAACCCGAAGATTCATTAC  120
            ||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||
Sbjct  84   CAATCTTTGATCCGAGATTCTTGCAAGAAAGCTGCAGATCAAAACCCAAAGATTCATTAC  143

Query  121  AACTTCTGTGTCAAGTCTCTCGAAGAGAATCCACAGAGCAAAACTGCACGTAGTCTTGAC  180
            || ||||| || |||||||||||||||||||| || |||||||| |||||||||||||| 
Sbjct  144  AATTTCTGCGTTAAGTCTCTCGAAGAGAATCCGCATAGCAAAACCGCACGTAGTCTTGAT  203

Query  181  AGGTTGGTCATGTTATCCACGAAAAACGCAGTGTCGAAAACAACAAGCATGAAAGGAATT  240
            ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  204  AGGTTGGTCATGTCATCCACAAAAAACGCAGTGTCGAAAACAACAAGCATGAAAGGAATT  263

Query  241  GTGGACAAGATTCTCAAGGAGAATAGATTTGAAATGTATAGTGAGAAACCATTACGTGAT  300
            ||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||| |||
Sbjct  264  GTGGACAAGATTCTCAAAGAGAATAGATATGAAAAGTACAGTGAGAAACCATTACGCGAT  323

Query  301  TGCCTCGAACTTTATTCGGATGCTACAAATTCCTTAAAGGAAGCTCTAACGATCATTAAG  360
            |||||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||| 
Sbjct  324  TGCCTCGAGCTTTATTCGGATGCTACAAATTCCTTAACCGAAGCTTTAACGATCATTAAA  383

Query  361  TCGCGTGATTATAAAACCGCTAACGTGGTTATAAGTGCTGCAATGGGTGCACCACCTAGT  420
            ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct  384  TCGCGTGATTACAAAACCGCTAACGTGGTTATAAGTGCCGCAGTGGGTGCACCACCTAGT  443

Query  421  TGCGAAATTGGATTCAAAGAAGGaaaaaaaCCTCTCAAATCTCCATTTACAAAAGATAAC  480
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  444  TGCGAAATTGGATTCAAAGAAGGAAAAGAACCTCTCAAATCTCCATTTACAAAAGATAAC  503

Query  481  GATGTTTTGTTT  492
            ||||||||||||
Sbjct  504  GATGTTTTGTTT  515



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17971282419


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5