BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G46980.1

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg330732 jgi|Araly1|330732|fgenesh1_pm.C_scaffold_8000075           259    1e-68


> Ahg330732 jgi|Araly1|330732|fgenesh1_pm.C_scaffold_8000075
Length=345

 Score =  259 bits (140),  Expect = 1e-68
 Identities = 171/186 (92%), Gaps = 2/186 (1%)
 Strand=Plus/Plus

Query  108  ATATGCGGAACCATACATTTACAAATTTTGTATCACATCCATCAAAGAGAATCCAGAGAG  167
            |||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||||
Sbjct  36   ATATGCGGAACCATACACCTACAAATTTTGTATTACATCTATCAAAGAGAATCCAGAGAG  95

Query  168  CCAAAAAGTAAGAAATATTGATGAATTGACTGTGGTATGTACTAATAGCGCGATATCAAA  227
            |||||||||||||||| | |||||| |||||||||||||||| |||||||| ||||||||
Sbjct  96   CCAAAAAGTAAGAAATGTAGATGAACTGACTGTGGTATGTACGAATAGCGCAATATCAAA  155

Query  228  CCTAACAAAAGTGAAAGGAACTGTAGAGAACATTTTGAATGA-AAGAAAGTATAAGAATA  286
            |||||||||||||||||||| ||||||||| ||||| || || || ||||||||||||||
Sbjct  156  CCTAACAAAAGTGAAAGGAATTGTAGAGAATATTTTAAACGAGAA-AAAGTATAAGAATA  214

Query  287  AGTTGA  292
            ||||||
Sbjct  215  AGTTGA  220


 Score =  193 bits (104),  Expect = 1e-48
 Identities = 119/126 (94%), Gaps = 2/126 (2%)
 Strand=Plus/Plus

Query  431  CTTGCGAAATGAAATTCAATGATGACAATCACCAGATATCTCCAGTGAAGAAAGAGAACG  490
            |||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||| 
Sbjct  221  CTTGTGAAATGAAATTCAACGATGACAATCACCAAATATCTCCGGTGAAGAAAGAGAAC-  279

Query  491  AT-GTTCTCTTCGACATGATCAACATTCCGTATTATTTTTGTTTCAATGCTCATATTAAC  549
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  280  ATCGTTCTCTTCGACATGATCAACATTCCCTATTATTTTTGTTTCAATGCTCATATTAAC  339

Query  550  GGCTAG  555
            ||||||
Sbjct  340  GGCTAG  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20260617759


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5