BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G46990.1

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg915365 jgi|Araly1|915365|Al_scaffold_0008_116                     693    0.0  


> Ahg915365 jgi|Araly1|915365|Al_scaffold_0008_116
Length=477

 Score =  693 bits (375),  Expect = 0.0
 Identities = 431/457 (94%), Gaps = 7/457 (2%)
 Strand=Plus/Plus

Query  95   AGAAAGCTTC-AAAAATGTCGGAA-CCACATTACTACAAGTTCTGCATTGCATCTATCAG  152
            |||||||||| |||||| || ||| |||||||||||||||||||||||||||||||| ||
Sbjct  10   AGAAAGCTTCAAAAAAT-TCAGAACCCACATTACTACAAGTTCTGCATTGCATCTATTAG  68

Query  153  CGAAAACCCGGAGAGTCAAAAAGTAAGAAA-TATCGATGAATTGATCGGAGTAGGAGTGA  211
            ||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||
Sbjct  69   CGAAAACCCGGAGAGTCAACAAGTAA-AAACTATCGATGAATTGATCGGGGTAGGAGTGA  127

Query  212  AAAACGCTATTTCGAACATGACGAACGTGAAAGGAATTGTGGAGAGGATTCTGAAGGACA  271
            ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct  128  AAAACGCTATTTCTAACATGACGAATGTGAAAGGAATTGTGGAGAGGATTCTGAAGGAAA  187

Query  272  GAAAGTATACGAGTAAAATGAGTGAGAAGATGTTGCGCGTTTGCGTTAAGCTTTATTCTG  331
            ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct  188  GAAAGTATACGAGTAAACTAAGTGAGAAGATGTTGCGCGTTTGTGTTAAGCTTTATTCTG  247

Query  332  AGGGCACTAACTTGTTAACCAAATGTTTAGAGTACATTAAATTGCGGGATTTCGATAAAG  391
            |||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| 
Sbjct  248  AGGGCACTAACTTGTTAATCAAATGTTTAGGGTACATTAAATTGCGGGATTTTGATAAAC  307

Query  392  TCCACAATACTATTCGTCATGCAAGAGTTGTTCCGAGAGAGTGTGAAATGGGATTCAATG  451
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  308  TCCACAATACTATTCGTCATGCAAGAGTTGTTCCAAGAGAGTGTGAAATGGGATTCAATG  367

Query  452  ACGATAATAAACAGAAATCTCCGGTGACGAAAGAGAACGATGTTCTATTCGACACCGTCG  511
            |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct  368  ACGATAATAAACAGAAATCTCCGGTGACAAAAGAGAACGATGTTCTCTTCGACACCGTCG  427

Query  512  ACATTGCTCA-GTCTTTTAATTACTATGCTCATATAA  547
            | |||||||| | |||||||||||||||||||| |||
Sbjct  428  AAATTGCTCAAG-CTTTTAATTACTATGCTCATGTAA  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20604018060


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5