BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47000.1
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494280 jgi|Araly1|494280|fgenesh2_kg.8__96__AT5G47000.1 2084 0.0
> Ahg494280 jgi|Araly1|494280|fgenesh2_kg.8__96__AT5G47000.1
Length=1394
Score = 2084 bits (1128), Expect = 0.0
Identities = 1316/1404 (94%), Gaps = 24/1404 (2%)
Strand=Plus/Plus
Query 1 CTCTTCTTAGTAACCTCCTAAGCCATGAAATAGTCG-CAAAGGCC-CTTTCTTCGTCTTC 58
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||| ||||
Sbjct 1 CTCTTCTTAGTAACCTCCTAAGCCATGAAATAGTCGCCAAA-GCCTTTTTCTTCTTCTTT 59
Query 59 GTTTCTAATTGCTTTCGACGACAATCGATCGTAGAGAAGTCTACCTCGTAGACATCTCTC 118
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||
Sbjct 60 GTTTCTAATTGCTTTCTACGACAATCGATCGTGGAGAAGTCTACCTCGTAGAC--CTCTC 117
Query 119 TCACAAATCC-AATTCAATTACCATTGTTTGTTATTATCTGATGTCGAATATGCAATTCT 177
|| |||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 118 TCTCAAA-CCAAATTCAATTACCATTGTTTG---TTATCTGATGTCGAATATGCAATTCT 173
Query 178 CTCGTGGTTTTAATCCCTTTGTTATCCTCTTCTGTCTCGCCGTGGTTGCACCAATTATAT 237
||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||| |||||
Sbjct 174 CTCGTAGTTTTAATCCCTTTGTTCTCCTCTTCTGTCTCGCCGTTGTTGTACCAACTATAT 233
Query 238 CGGCTGATGTCGCTATCTTGAGAACGGACTATTACCAAAAAACATGTCCTGATTTCCACA 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 234 CGGCTGATGTCGCTATCTTGAGAACGGACTATTACCAAAAAACATGTCCTGATTTCAACA 293
Query 298 AAATTGTGCGTGAAGCCGTTACAACCAAACAAGTCCAACAACCAACAACTGCGGCCGGGA 357
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 294 AAATCGTGCGTGAAGCCGTTACAACCAAACAAGTTCAACAACCAACAACTGCGGCCGGGA 353
Query 358 CCCTCCGTCTCTTTTTCCATGATTGTTTCCTTGAAGGTTGTGATGCATCTGTCTTGATCG 417
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 354 CACTCCGTCTCTTTTTCCACGATTGTTTCCTTGAAGGTTGTGATGCATCCGTCTTGATCG 413
Query 418 CGACCAACTCGTTCAACAAAGCGGAACGCGATGATGATCTCAATGATTCCCTCCCGGGAG 477
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 414 CGACCAACTCGTTTAACAAAGCGGAACGTGATGATGATCTCAATGATTCCCTCCCGGGAG 473
Query 478 ATGCTTTTGACATCGTCACCCGCATCAAGACAGCTCTCGAGTTGTCTTGTCCTGGTGTAG 537
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 474 ATGCTTTTGACATCGTCACTCGCATCAAGACAGCTCTCGAGCTGTCTTGTCCTGGTGTAG 533
Query 538 TATCATGCGCGGATATTCTAGCGCAGGCTACACGTGACCTTGTCACAATGGTAGGAGGAC 597
| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGTCTTGCGCAGATATCCTAGCGCAGGCTACACGTGACCTTGTCACAATGGTAGGAGGAC 593
Query 598 CTTACTTTGACGTAAAGCTTGGTCGTAAAGACGGATTCGAATCCAAAGCTCATAAAGTCA 657
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 594 CTTACTTTGACGTAAAGCTTGGTCGTAAAGACGGATTCGAATCCAAAGCCCATAAAGTCC 653
Query 658 GAGGAAATGTCCCAATGGCAAACCAGACTGTTCCTGACATCCACGGGATATTCAAGAAAA 717
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 654 GAGGAAACGTCCCAATGGCAAACCAGACCGTTCCCGACATCCACGGGATATTCAAGAAAA 713
Query 718 ACGGTTTTAGTCTTCGCGAGATGGTAGCATTAAGCGGGGCTCACACCATTGGATTCTCTC 777
|||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 714 ACGGGTTCACTCTTCGCGAGATGGTAGCATTAAGCGGCGCTCACACCATTGGATTCTCTC 773
Query 778 ACTGCAAAGAGTTTTCCGACAGACTCTACGGATCCCGTGCTGATAAAGAAATCAACCCGC 837
|||||||||||||| ||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 774 ACTGCAAAGAGTTTGCCGACAGGCTTTACGGATCCAAAGCTGATAAAGAAATCAACCCGC 833
Query 838 GATTCGCAGCCGCTCTCAAAGATCTTTGCAAAAACCACACCGTGGATGATACAATCGCCG 897
|||| ||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 834 GATTTGCAGCTGCTCTCAAAGATCTCTGCAAAAATCACACCGTGGATGACACAATCGCCG 893
Query 898 CGTTTAACGACGTGATGACTCCAGGAAAGTTCGACAACATGTACTTCAAGAACCTAAAGC 957
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 894 CGTTTAATGACGTGATGACTCCGGGAAAATTCGACAACATGTACTTCAAGAACCTAAAGC 953
Query 958 GAGGGCTAGGGCTTTTAGCGTCTGACCACATCCTTATTAAAGACAACAGCACCAAGCCGT 1017
|||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 954 GAGGGCTAGGGCTTCTAGCTTCCGACCATATCCTTATTAAAGACAACAGCACCAAGCCGT 1013
Query 1018 TTGTGGATCTATACGCAACTAACGAGACAGCATTCTTTGAGGATTTCGCTCGTGCGATGG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TTGTGGATCTATACGCAACTAACGAGACAGCATTCTTTGAGGATTTCGCTCGTGCGATGG 1073
Query 1078 AGAAACTTGGCACGGTCGGCGTCAAGGGCGATAAAGATGGAGAAGTGAGACGTAGGTGCG 1137
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1074 AGAAACTTGGCACGGTCGGTGTCAAGGGCGATAAAGAAGGAGAAGTGAGACGTAGGTGCG 1133
Query 1138 ACCACTTCAACAATCTCAACGTTTAAGAAGAAAAAGAAAACACAAAACCATATAAATATA 1197
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1134 ACCACTTCAATAATCTCAACGTTTAAGAAGAAAAAGAAAACACAAAACAATATAAATATA 1193
Query 1198 ATATTATTTCTGTTTT--ATTTGCGGAGGAG-T-T-GAGGAGAAGAAAGGTTTGGTTGGT 1252
|||||||| | ||||| |||||||| |||| | | || |||||||||||||||||||||
Sbjct 1194 ATATTATT-CGGTTTTTTATTTGCGG-GGAGATATTGATGAGAAGAAAGGTTTGGTTGGT 1251
Query 1253 ATATATGTTTAATAACTACC-TATTATAAGCAAGATCTTGTAACAATTCAAGTTGGGATG 1311
|||||||||||||||||| | ||| ||||| |||||| |||||||||||||| |||||||
Sbjct 1252 ATATATGTTTAATAACTATCGTATCATAAGGAAGATCGTGTAACAATTCAAGATGGGATG 1311
Query 1312 TTTAATTTTTCCATGAAAAT-T-CAAACTGTTGTATTGAAAGTATATAGATAAAA--TAA 1367
|||||||||||||| ||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 1312 TTTAATTTTTCCAT-AAAATATGCAAACTGTTGTATTGAAAGTATATAGATAAAAAATAA 1370
Query 1368 -CATATTATATATCGAACAATTGT 1390
|||||||||||||||||| ||||
Sbjct 1371 ACATATTATATATCGAACAGTTGT 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51955094180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5