BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47030.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494277 jgi|Araly1|494277|fgenesh2_kg.8__93__AT5G47030.1 1520 0.0
> Ahg494277 jgi|Araly1|494277|fgenesh2_kg.8__93__AT5G47030.1
Length=979
Score = 1520 bits (823), Expect = 0.0
Identities = 933/983 (95%), Gaps = 19/983 (2%)
Strand=Plus/Plus
Query 8 TCTCTCTCTCATCTGCGACGTATAATTTCCCCAATTTCTCAGAGAGACTCAAAATCACCA 67
||||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 1 TCTCTTTCTCATCTGCGACGTCTAATTTCCCCAATTTCTCAGAGCGACTC-AAATCACCA 59
Query 68 CCACCACC-AAATCGCCGCCATGTTTAAACAAGCTTCTCGTCTCCTCTCCCGATCTGTCG 126
|||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 60 CCACCACCAAAATCGCCGCCATGTTGAAACAAGCTTCTCGTCTCCTATCCCGATCTGTCG 119
Query 127 CCGCCGCATCTTCCAAATCGGTGACGACTCGTGCCTTTTCAACGGAACTTCCATCGACGC 186
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCGCCGCATCTGCCAAATCGGCGACGACTCGTGCCTTTTCAACGGAACTTCCATCGACGC 179
Query 187 TCGATTCCACTTTCGTCGAGGCATGGAAGAAAGTCGCACCGAATATGGACCCACCGCAGA 246
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 TCGATTCGACTTTCGTCGAGGCATGGAAGAAAGTCGCACCGAATATGGAACCACCGCAGA 239
Query 247 CTCCTTCTGCTTTCATGAAACCTCGTCCTTCCACTCCTTCTTCTATCCCGACGAAGCTCA 306
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 240 CTCCTTCTACTTTCATGAAACCTCGTCCTTCGACTCCTTCTTCTATCCCGACGAAGCTCA 299
Query 307 CCGTCAATTTTGTCCTCCCTTACACATCTGAGCTTACCGGGAAAGAGGTCGACATGGTCA 366
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCGTCAATTTTGTCCTTCCTTACACATCTGAGCTTACCGGGAAAGAGGTCGACATGGTCA 359
Query 367 TCATTCCCGCATCAACAGGACAAATGGGTGTCTTGCCCGGACACGTTCCAACAATTGCTG 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCATTCCCGCATCAACAGGACAAATGGGTGTCTTGCCCGGACACGTTCCAACAATTGCTG 419
Query 427 AGCTAAAACCTGGCATCATGTCCGTCCATGAAGGCACTGACGTGAAGAAATACTTCTTGA 486
|||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 420 AGCTAAAACCCGGTATCATGTCTGTCCATGAAGGCACTGACGTGAAGAAATACTTCCTGA 479
Query 487 GCAGTGGTTTTGCATTCCTCCACGCAAATTCCGTCGCTGACATAATCGCGGTGGAAGCTG 546
||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 480 GCAGTGGTTTTGCATTCCTCCACGCAAATTCAGTCGCCGACATAATCGCGGTTGAAGCTG 539
Query 547 TGCCGCTTGACCACATTGACCCTAGCCAAGTCCAAAAGGGTTTAGCTGAGTTCCAACAGA 606
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TACCACTTGACCACATTGACCCTAGCCAAGTCCAAAAGGGTTTAGCTGAGTTCCAACAGA 599
Query 607 AACTTGCTTCTGCCACAACAGATCTTGAGAAAGCAGAGGCACAGATTGGTGTTGAAGTTC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 600 AACTTGCTTCTGCCACAACAGATCTTGAGAAAGCAGAGGCACAGATTGGTGTTGAGGTTC 659
Query 667 ACAGTGCCATCAACGCAGCTCTCTCGGGCTAAAAGAAGGTT--TCTTT--CTTTATTTCT 722
||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 660 ACAGTGCCATCAATGCAGCTCTCTCGGGCTAAAAGAAGGTTACTCTTTTTCTTTATTTCT 719
Query 723 TCGAAGAAACaaaaaaaaaaCTAAATCATTTGGCTTTTCAAGTGATTAGTGAAGTCCCTT 782
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCGAAGAAA-AAAAAAAAAACTAAATCATTTGGCTTTTCAAGTGATTAGTGAAGTCCCTT 778
Query 783 TTTACTACTGCAAAGGATGGAATA---T-----T-GATTCTTCTTGTTTAATCGTGTTGG 833
||||||||| |||||||||||||| | | |||| |||||||||||| |||||||
Sbjct 779 TTTACTACTACAAAGGATGGAATAAACTAGAAATTGATTTTTCTTGTTTAATTGTGTTGG 838
Query 834 ACTTTTGTTTGAATAAATGATTTTGTTT-AACGGGCACAAAAACCCACAAAAGTTTCTTG 892
|||||||||||||||||||||||||||| || ||||||||| |||| ||||||||||||
Sbjct 839 ACTTTTGTTTGAATAAATGATTTTGTTTTAAGGGGCACAAA--CCCAAAAAAGTTTCTTG 896
Query 893 TGTTCATATCTCTGCACCTTTGTTTTTGTGTATGACTTTGTTGTGTTGAGAAACTAAGTT 952
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 897 TGTTCATATCTCTGCACCTTTGTTTTTGGGTATGACTTTGTTGTGTTGAGAAACTAAGTT 956
Query 953 GGAATTTCTTTAAGGTTTCGTTT 975
||||| | |||||||||||||||
Sbjct 957 GGAATCTATTTAAGGTTTCGTTT 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5