BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47050.1
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494275 jgi|Araly1|494275|fgenesh2_kg.8__91__AT5G47050.1 1352 0.0
> Ahg494275 jgi|Araly1|494275|fgenesh2_kg.8__91__AT5G47050.1
Length=1499
Score = 1352 bits (732), Expect = 0.0
Identities = 887/961 (92%), Gaps = 14/961 (1%)
Strand=Plus/Plus
Query 261 ttctctctGTTCATGGCGGTTCAAGCTCATCACCATCCTTCTACTCTCTTCTTCCTCAAC 320
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 204 TTCTCTCTGTTCATGGCGGTTCAAGCTCATCACCAACCTTCTACTCTCTTCTTCCTCAAC 263
Query 321 AACGGACAAGAAGGG-A--A----T-G-ATCAGCCGCATAAATCTCAGTTTCATTCAATC 371
||||||||||||||| | | | | ||||||| ||||||||||||||||||| ||||
Sbjct 264 AACGGACAAGAAGGGAATGATTGTTCGAATCAGCCTCATAAATCTCAGTTTCATTTAATC 323
Query 372 AACGCCGGGGTTGATACAAGAAAGCGAGCGAGAGAAGTTTCTTCGGTGATTGATTTAGAT 431
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 324 AACGCCGGGGTTGATTCAAGAAAGCGAGCGAGAGAAGTTTCGTCGGTGATTGATTTAGAT 383
Query 432 ATCACGGCGGCTCCGATGAACCCTCCGCCGCAAACTCCACCGCAAGTTATAGGACGTCGA 491
||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 384 ATCACGGTGGCTCCGATGAACCCTCCGCCGCAAACTCCGCCGCAAGTTATCGGACGTCGA 443
Query 492 CAAAATCCGAATGTTGTATCAACCGGTCTACGTTTGTCTCGTGAACAGTCGCAGAATCAA 551
||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 444 CAAGCTCCGAATGTAGTATCAACTGGTCTACGTTTGTCTCGTGAACAGTCGCAGAATCAA 503
Query 552 GAACAACGGTTTTTGTCTTTTCCGATAACCGGAGATGTCGCCGGAGAAATCAAAAGCCAA 611
||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| ||||
Sbjct 504 GAACAACCGTTTTTGTCTTTTCCGATGACCGGGGATGTCGCCGGAGAAATCAAAAACCAA 563
Query 612 ACGGACGAATTAAATAGATTTCTTCAAATCCAGGGAGAGCAGCTTAAGCGCATGTTAGCT 671
||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 564 ACGGACGAATTAAATAGATTTCTACAAATCCAGGGAGAGCAGCTGAGGCGCATGTTAGCG 623
Query 672 GAAAACAGTGAGAGGAACTATCGTGAGCTTCTGAGAACAACGGAAGAATCAGTAAGGCGG 731
||||||| ||| ||| ||||||||||||| || ||||| |||||||||||||| ||||||
Sbjct 624 GAAAACAATGAAAGGCACTATCGTGAGCTACTAAGAACGACGGAAGAATCAGTTAGGCGG 683
Query 732 AGATTAAGAGAGAAAGAAGCGGAGATCGAGAAAGCCACACGTCGTCATGTCGAGCTAGAA 791
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 684 AGATTAAGAGAGAAAGAAGCAGAGATCGAGAAAGCCACGCGTCGTCATGTCGAGCTAGAA 743
Query 792 GCACGTGCGACTCAGATCGAAACAGAGGCACGTGCTTGGCAAATGAGAGCAGCTGCTAGA 851
||||||||| |||| || ||||||||| ||||||| |||||||||||||| || || |||
Sbjct 744 GCACGTGCGGCTCAAATGGAAACAGAGTCACGTGCCTGGCAAATGAGAGCGGCGGCGAGA 803
Query 852 GAAGCCGAAGCGACGTCGTTACAAGCTCAATTACACCAAGCCGTAGTAGTAGCTCACGGT 911
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 804 GAAGCCGAAGCGACGTCGTTACAAGCTCAATTGCAGCAAGCCGTAGTTGTAGCTCACGGC 863
Query 912 GGCGGAGTTATTACGACGGTGGAGCCACAATCGGGAAGCGTAGACGGTGTGGATGAAGCT 971
|| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 864 GGTGGAATTATTACGACGGCGGAGCCACAATCGGGAAGCGTAGACGGTGTGGATGATGCC 923
Query 972 GAAGACGCCGAATCGGCTTATGTGGATCCCGACCGGGT-CGAAATGATTGGA-CCGGGAT 1029
||||| |||||||||||||| |||||||| || | ||| |||||| | | || ||| |||
Sbjct 924 GAAGATGCCGAATCGGCTTACGTGGATCCAGATC-GGTACGAAAT-AATCGAGCCGAGAT 981
Query 1030 GTAGGATTTGCCGGCGGCGATCGGCGACGGTGTTGGCTTTGCCGTGTCGTCATTTGGTTA 1089
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GTAAGATTTGCCGGCGGCGATCGGCGACGGTGTTGGCTTTGCCGTGTCGTCATTTGGTTC 1041
Query 1090 TGTGTACAGAATGCGACGGCTCCGTGAGAATTTGTCCGCTTTGCCTTAGCACGAAGAATT 1149
|||||| || |||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1042 TGTGTAAAGGATGCGATGGCTCCGTGAGAATTTGTCCGCTATGCCTTAGCACGAAGAATT 1101
Query 1150 CAAGCGTGGAGGTTTTCTATTCTTGATGGGC-CATTCTATAATGGGCTTATCAGGCCCAA 1208
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1102 CAGGCGTGGAGGTTTTCTATTCTTGATGGGCTCATTCTATAATGGGCTTATCAGGCCCAA 1161
Query 1209 T 1209
|
Sbjct 1162 T 1162
Score = 291 bits (157), Expect = 2e-77
Identities = 230/263 (87%), Gaps = 13/263 (5%)
Strand=Plus/Plus
Query 1355 tttttGGTCTTTAGGAATTCTTTTGATTTCGTAATAAATCAACCTTGATTGTTTAATTTT 1414
|||||||| ||||| |||||||||||| |||||||||||||||||||| || |||| ||
Sbjct 1246 TTTTTGGTTTTTAGAAATTCTTTTGATATCGTAATAAATCAACCTTGACTG-TTAA-ATT 1303
Query 1415 TAATTACTTTACATATATAGCATTTGATA-CGATATGATTTATTTATGATGTTTTAG-TA 1472
|| ||| |||||| ||||||||||| ||| ||||||| ||||||||| |||||| |
Sbjct 1304 TATTTATTTTACACATATAGCATTTAATATCGATATG----ATTTATGATATTTTAGCT- 1358
Query 1473 GAGGATGAGACATGATTTAGTATTATTTTCAAATGTTTTGTATTGTTATAATATTTGTAT 1532
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GATGTTGAGGCATGATTTAGTATTATTTTCAAATGTTTTGTATTGTTATAATATTTGTAT 1418
Query 1533 TCTAATTAAGAATAT-T-CTAGGGTTTTTGTGTTTTTAAATATCTATTTGTATAAAGCAT 1590
| |||||| |||||| | |||||||||||| | ||||| |||| | ||||||||||||||
Sbjct 1419 TATAATTAGGAATATCTTCTAGGGTTTTTGGGATTTTATATAT-T-TTTGTATAAAGCAT 1476
Query 1591 GTTCATTATTTCTTGTTTTTGGT 1613
|||||| |||||||||||||||
Sbjct 1477 CTTCATTGTTTCTTGTTTTTGGT 1499
Score = 200 bits (108), Expect = 3e-50
Identities = 192/227 (85%), Gaps = 28/227 (12%)
Strand=Plus/Plus
Query 1 CTTATTAAAAGCccttccctt-aaaaacttcccaattccattcctcttcctcttccttc- 58
|||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 1 CTTATTAAAAGCTCTTCCCTTAAAAAACTCCCCAATTCCATTCCTCTTCCTCTTCC-TCT 59
Query 59 tccttc-ttcttcttcttcACCATTTATTTCTCATCATCATACTTATAAAAAGTAAATCA 117
||| || | |||||||||||||||||| || || |||| || |||| ||||| ||||||
Sbjct 60 TCC-TCGTCCTTCTTCTTCACCATTTA-TT-TC-TCAT-AT--TTAT-AAAAGAAAATCA 111
Query 118 GAATCCCGAAGCAAACTTTCAATCTTCCATCATCATCATCATGTCCGATACACATACATA 177
|||||||||| |||| |||||||| | | ||||||||||||||| |||
Sbjct 112 GAATCCCGAACCAAAGTTTCAATC-T---T--TCATCATCATGTCCG----------ATA 155
Query 178 CATACATATCTTTCGTGTGATTTATACTTATTAAAGAGAGATTCTCT 224
||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 156 CATACATATCTTTCGTGTGATTTATACTTATTAAAGAGAAATTCTCT 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62353731065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5