BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47060.1
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494274 jgi|Araly1|494274|fgenesh2_kg.8__90__AT5G47060.1 800 0.0
> Ahg494274 jgi|Araly1|494274|fgenesh2_kg.8__90__AT5G47060.1
Length=822
Score = 800 bits (433), Expect = 0.0
Identities = 535/582 (92%), Gaps = 16/582 (3%)
Strand=Plus/Plus
Query 14 CTCTCTCTTTCACTTTCTCTCTAAAAACCAGaaaaaaaaaaaaTGGAGCTTTCATCGAGA 73
||||||||||||| ||||||||||||||||| ||| |||||||||||| |||| ||||||
Sbjct 1 CTCTCTCTTTCACCTTCTCTCTAAAAACCAG-AAAGAAAAAAATGGAGGTTTCGTCGAGA 59
Query 74 AAGCCTTATTTCATTGAGGAAGAAGAAGAAGAGAATTTGGCTTCTTCTTTATCAGAAATG 133
|||||||||||||| || ||||||||||| || ||||| |||||||||||| ||||||||
Sbjct 60 AAGCCTTATTTCATCGAAGAAGAAGAAGATGATAATTTAGCTTCTTCTTTAACAGAAATG 119
Query 134 GAAGCTGGGTTTTCTGGTAACAATAATAATAGTAATAACCATGGAAATCCCCAAAACGGT 193
||||||||||||||||||| | ||| | | ||| |||||||||||||||| ||||
Sbjct 120 GAAGCTGGGTTTTCTGGTAGC---AAT-A-A-CAAT---CATGGAAATCCCCAAAGCGGT 170
Query 194 GTCGTTTCTTCAAGCCGTTTCTCTTACGGTAGATTAAACAGTCTTAGGAACAGTCAG-AG 252
|||| | |||||||||||||||||||| |||| |||||||||| ||||||| | | |
Sbjct 171 GTCG--T-TTCAAGCCGTTTCTCTTACGTTAGAATAAACAGTCTCAGGAACACT-TGTAA 226
Query 253 TTATTATTACAATCAATACTCTGTTTCGTCTCCGAGATCTGTTGTGTCTGGAAGATTTCA 312
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 227 TAATTATTACAATCAATACTCTGTTTCGTCTCCGAGATCTGTTGTTTCTGGAAGATTTCA 286
Query 313 TGATTTCAGATTCGATATTCAACAACCTCATTTCTTGGACTCGTGTTTCCTCTGTAAGAA 372
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 287 TGATTTCAGATTCGATAATCAACAACCTCATTTCTTGGATTCGTGTTTCCTCTGTAAGAA 346
Query 373 ACCTCTTGGTGATAACAGAGACATCTACATGTACAGAGGAGATACACCGTTTTGCAGTga 432
|||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 347 ACCTCTTGGTGACAACAGAGACATCTTTATGTACAGAGGAGACACACCGTTTTGCAGTGA 406
Query 433 agagtgtagacaagaacagatagagagagatgaagcaaaagagaagaaacagaaTCTGTC 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AGAGTGTAGACAAGAACAGATAGAGAGAGATGAAGCAAAAGAGAAGAAACAGAATCTGTC 466
Query 493 TCATTCGGTGAAATCAGCTATGCGGAGGAAAGAACAATCTTCACCAACTAGATCTCGTGA 552
| |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 467 TTATTCTGTGAAATCAGCTATGAGGAGGAAAGAACAATCTTCTCCAACTAGATCTCGTGA 526
Query 553 TTATGCTTTTCACAATGGAACTGTTGCTGCTGCTTAA-TTAA 593
||||||||||||||||||||||||||||||||||||| ||||
Sbjct 527 TTATGCTTTTCACAATGGAACTGTTGCTGCTGCTTAAATTAA 568
Score = 346 bits (187), Expect = 2e-94
Identities = 247/274 (90%), Gaps = 12/274 (4%)
Strand=Plus/Plus
Query 619 TTATAATTAATTAGGTTAAGaaaaaaaTAAGCTATATTGTATCTAACGCTATGAAGCTGG 678
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 560 TTA-AATTAATTAGGTTAAGAAAAAAATAAGCTATATTTTATCTAACGCTATGAAGCTGG 618
Query 679 TTTTGGATCCTCTCTCTTTCTCTCGAGATCTTAAGGATCTTTTAAAACTTTAGCTTCAAG 738
||||| | | ||| |||||||||||||| | |||||||| |||||||||||||||
Sbjct 619 TTTTGTTTTGGAT-TCTCTCTCTCGAGATCTTGA-GATCTTTT-TAACTTTAGCTTCAAG 675
Query 739 TCTTGGGAAAAAGATGAAGAAGCTAAAGATCCTTTAAttttcttttctttttttGTAAGa 798
||||| | |||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TCTTGTG-AAAAGA-GGA-AAGCTAAAGATCCTTTAATTTTCTTTTCTTTTTTTGTAAGA 732
Query 799 -aaaaaaTAGTTTCTTGACATGAAATTTTGGGAGTATGAGAAGAGAAAATGTAAATGCCT 857
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GAAAAAAGAGTTTCTTGACTTGAAATTTTGGGAGTATGAGAAGAGAAAATGTAAATGCCT 792
Query 858 ATGTGAATTATAATAGTCCATGGCATGTTTGAGT 891
||||||||||| |||||||||||||| ||||
Sbjct 793 ATGTGAATTAT----GTCCATGGCATGTTCGAGT 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5