BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47070.1 Length=1754 Score E Sequences producing significant alignments: (Bits) Value Ahg494273 jgi|Araly1|494273|fgenesh2_kg.8__89__AT5G47070.1 1964 0.0 Ahg890447 jgi|Araly1|890447|Al_scaffold_0007_2433 459 4e-128 > Ahg494273 jgi|Araly1|494273|fgenesh2_kg.8__89__AT5G47070.1 Length=1552 Score = 1964 bits (1063), Expect = 0.0 Identities = 1287/1386 (93%), Gaps = 51/1386 (4%) Strand=Plus/Plus Query 361 ttttttATCTC-TCTTTAAGACATGAACTGTCTGTTCTTGTTcaaatcaaagaaa--c-- 415 |||| |||||| || |||||||||||| ||||||||||||||||||||||||||| | Sbjct 193 TTTTCTATCTCTTC-TTAAGACATGAATTGTCTGTTCTTGTTCAAATCAAAGAAACCCAA 251 Query 416 --ccagaaagcaacagaaag---------acaacaac---aagaacaaaagaaaaggtaa 461 ||||||| |||||||||| |||||||| |||||||||||||||||||| Sbjct 252 ATCCAGAAATCAACAGAAAGACAACAACAACAACAACAAAAAGAACAAAAGAAAAGGTAA 311 Query 462 agaGTTGTTACAAAACTCAGCTCCAGAACTGACGAATCGGAGTGAAACGTCTTCGTTTAA 521 ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 312 AGAATTGTTACAAAACTCAGCTCCAGAACTGACTAATCGGAGTGAAACGTCGTCGTTTAA 371 Query 522 TCTCCAGACACCAAGATCGTTGCCTTCTCCAAGAAGTATCAAAGATTTGTATACAGAGAG 581 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 372 TCTCCAGACGCCAAGATCGTTGCCTTCTCCAAGAAGTATCAAAGATTTGTATACAGAGAG 431 Query 582 AGAACAAAATCTTAGGGTTTTTTCTTACGAAGAACTCAGTAAAGCCACTTATGTGTTTAG 641 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || Sbjct 432 AGAACAAAATCTTAGGGTTTTCACTTACGAAGAACTCAGTAAAGCCACTTATGGGTTCAG 491 Query 642 CAGAAAGCTTGTGATCGGTGAAGGTGGATTTGGTATTGTTTATAAAGGAAAGATTCTCAG 701 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 492 CAGAAAGCTTGCGATCGGTGAAGGTGGATTTGGTATTGTTTATAAAGGAAAGATTCTCAA 551 Query 702 CAATGGAGATTCTTCTGATCCTCCACTTGTCGTTGCCATCAAGAAACTCAATCGACAAGG 761 ||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 552 CAATGGAGA---TTCTGATCCTCCACTAGTCGTCGCCATTAAGAAACTCAATCGACAAGG 608 Query 762 TTTACAGGGTCACAAGCAATGGCTAGCAGAGGTTCAGTTTCTTGGAGTAGTGAATCATCC 821 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609 TTTACAGGGTCACAAGCAATGGCTAGCAGAGGTTCAGTTTCTTGGAGTAGTGAATCATCC 668 Query 822 GAACGTTGTGAAGCTCATAGGTTATTGCTCGGAAGACGGCGAGACCGGGATCGAGAGGCT 881 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 669 GAACGTTGTGAAGCTCATAGGTTATTGCTCGGAAGACGGCGAGACTGGGATCGAGAGGCT 728 Query 882 TTTGGTTTATGAGTACATGTCGAATCGAAGTTTAGAAGACCATCTCTTCCCTCGTCGATC 941 ||||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||| Sbjct 729 TTTGGTTTATGAGTATATGTCGAATCGAAGTTTAGAGGACCATCTCTTTCCACGTCGATC 788 Query 942 ACACACATTACCGTGGaaaaaaaGACTCGAGATCATGCTTGGTGCTGCTGAAGGATTGAC 1001 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 789 ACACACATTACCGTGGAAAAAAAGACTCGAGATCATGCTTGGTGCAGCTGAAGGATTGGC 848 Query 1002 TTATTTACATGATCTTAAGGTGATATATAGAGATTTCAAATCCTCTAATGTGCTTTTAGA 1061 |||||||||||| |||||||| |||||| ||||||||||||| ||||||||||| ||||| Sbjct 849 TTATTTACATGAACTTAAGGTTATATATCGAGATTTCAAATCGTCTAATGTGCTCTTAGA 908 Query 1062 CGATCAATTCTGTCCAAAATTATCGGACTTTGGGCTTGCCAGAGAAGGACCTGATGGCGA 1121 | || |||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 909 CCATGAATTCTGTCCGAAATTATCAGACTTTGGGCTTGCCAGAGAAGGGCCTGAGGGCGA 968 Query 1122 CAATACTCATGTCACTACCGCAAGAGTTGGAACACACGGCTATGCGGCTCCGGAATACGT 1181 |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 969 CAATACTCATGTCACTACCGCAAGAGTTGGTACACACGGCTATGCAGCTCCTGAATACGT 1028 Query 1182 GCAAACAGGTCATCTTCGGTTAAAGAGCGACGTCTATAGCTTCGGTGTTGTGCTCTACGA 1241 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1029 GCAAACAGGTCATCTTCGGTTAAAGAGCGATGTCTATAGCTTCGGTGTTGTGCTCTACGA 1088 Query 1242 GATCATAACCGGACGCAGAACCATTGAGAGGAACAAGCCAGTGGCTGAACGAAGGCTATT 1301 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1089 GATCATAACCGGACGCCGAACCATTGAGAGGAACAAGCCAGTGGCTGAACGAAGGCTATT 1148 Query 1302 GGATTGGGTCAAAGAGTATCCTGCTGATAGTCAACGTTTCAGCATGATCGTTGACCCTCG 1361 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1149 GGATTGGGTGAAAGAGTATCCTGCTGATAGTCAACGGTTCAGCATGATCGTTGACCCTCG 1208 Query 1362 GTTACGCAACAATTATCCAGCTGCTGGAGCTAGGAGTTTGGCTAAATTGGCTGATCTTTG 1421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1209 GTTACGCAACAATTATCCAGCTGCTGGAGCTAGGAGTTTGGCTAAATTGGCTGATCTTTG 1268 Query 1422 CCTGAAAAAGAACGATAAAGAGCGACCTACGATGGAAATTGTAGTGGAAAGATTGAAAAA 1481 |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| Sbjct 1269 TCTGAAAAAGAACGATAAAGAGCGACCCACAATGGAAATTGTAGTAGAAAGATTGAAAAA 1328 Query 1482 GATTATCGAAGAATCGGATAGTGAAGATTATCCGATGGCTACGACTACGACCAAGGAAAG 1541 ||||||||||||||| |||| ||||||||||||||||||||| | | | |||||||| Sbjct 1329 GATTATCGAAGAATCCGATAATGAAGATTATCCGATGGCTAC-A----G-CTAAGGAAAG 1382 Query 1542 TAGTCAGGTAAGGAGGAGACAAGTTGCAAAACCTGAGAAACAAAGTTTGAGAG--GGG-T 1598 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1383 TAGTCAGGTAAGGAGGAGACAAGTTGCAAAACCTGAGAAACAAAGTTTGAGAGAAGGGGT 1442 Query 1599 TAGTGTCAGAGGATGATTTTGAGTTTAGAAGtttttttGCAAGTTTATATATTATAAATA 1658 ||||||||||||||||||||||||||||||||||||| | | | | || | | Sbjct 1443 TAGTGTCAGAGGATGATTTTGAGTTTAGAAGTTTTTT---A--T--A-A-AT-A-A---- 1487 Query 1659 AGTTTATGCAATTTGTTGGTTTATTGTGAGAT--T-AGTAGAGAAAATGTATCTTATTGT 1715 ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 1488 -GTTTATGCAATTTGTTGGTTTATTGTGAGATGATTAGTAGAGAAAATGTATCTTATTGT 1546 Query 1716 GTGTTT 1721 |||||| Sbjct 1547 GTGTTT 1552 Score = 137 bits (74), Expect = 2e-31 Identities = 95/105 (90%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 232 ATTTGTTCCATTTTCTCAATTTTAGAACTTAAGAAACCC-AAAAAGCAAATTTTTAGTAC 290 |||||||||||||||| ||||| ||||||| |||||||| |||||| ||| | ||||||| Sbjct 97 ATTTGTTCCATTTTCTTAATTTCAGAACTTGAGAAACCCAAAAAAGGAAACTATTAGTAC 156 Query 291 ATTTTCT-GGTTTAACTAAAGTAATTAATTTTTGTGTTTTCCATC 334 ||||| | ||||||||||||||||||||||||||||||||| ||| Sbjct 157 ATTTTGTGGGTTTAACTAAAGTAATTAATTTTTGTGTTTTCTATC 201 Score = 84.2 bits (45), Expect = 3e-15 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 157 ATAGATCTGTGTTCATACTCTTCTTCCACAATCTAACCCaaaaaaaaa 204 |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 50 ATAGATCTGTGTTCATACTCTTCTTCCACAATCTAACCCAAAGAAAAA 97 > Ahg890447 jgi|Araly1|890447|Al_scaffold_0007_2433 Length=1176 Score = 459 bits (248), Expect = 4e-128 Identities = 853/1130 (75%), Gaps = 101/1130 (9%) Strand=Plus/Plus Query 382 ATGAACTGTCTGTTCTTGTTcaaatcaaagaaacccagaaa-gca-acagaaagac--aa 437 ||||| ||| ||||| ||||||| || |||||| ||| ||| || | ||||| | || Sbjct 1 ATGAATTGTATGTTCGTGTTCAAGTCCAAGAAA-CCA-AAATCCAGA-AGAAA-TCTGAA 56 Query 438 caaca-agaac-aaaaga-aa-aggtaa-agaGTTGTTACAAAACTCAGCTCCAGAACTG 492 || | | ||| |||| | || ||| || |||||| |||||||| || ||||||||| | Sbjct 57 GAA-AGATAACAAAAACATAAGAGG-AAGAGAGTTTTTACAAAAGTCTGCTCCAGAATTA 114 Query 493 ACGAATCGGAGTGA-AACGTC--T-TCGTTTAATCT-CCAGACACCAAGATCGT-TGCCT 546 ||| | | || | ||| || | ||||| ||||| ||| ||||||||||| | |||| Sbjct 115 ACG-A-C-AAG-AAGAACATCTTTGTCGTTCAATCTCCCA-ACACCAAGATC-TCTGCCA 168 Query 547 TCTCCAA-GAAGTATCAAAGATTTGTATAC--AGAGAGAG---AA-CAAAAT------CT 593 ||||||| | ||||||||||| ||||| || |||||||| || |||||| || Sbjct 169 TCTCCAACG-AGTATCAAAGACTTGTACACTGAGAGAGAGCAAAATCAAAATCAAAACCT 227 Query 594 TAGGGTTTTTTCTTACGAA-GAACTCAGTAAAGCCACTTATGTGTTTAGCAGAAAGCTTG 652 | |||||| |||||| || ||||| ||| | ||||| | || |||||||||||||| || Sbjct 228 AATGGTTTTCTCTTAC-AAGGAACTGAGTGACGCCACGTGTGAGTTTAGCAGAAAGC-TG 285 Query 653 -TGATCGGTGAAGGTGGATTTGGTATTGTTTATAAAG-GA--A---AGATTCTCAGC-AA 704 |||||| |||||||| ||||||| ||| ||||||| | | | | || || | | Sbjct 286 AAGATCGGAGAAGGTGGTTTTGGTAGTGTCTATAAAGCCACCATTGACAATCCCACCGGA 345 Query 705 TGGAGATTCTTC-TGATCCTCCACTTGTCGTTGCCATCAAGAAACTCAATCGACAAGGTT 763 |||||||| || | | |||||||| ||| ||||| |||||||| ||||||||| || Sbjct 346 -GGAGATTC-TCATTCTTCTCCACTTACCGTCGCCATTAAGAAACTTAATCGACAAAGTC 403 Query 764 TACAGGGTCACAAGCAATGGCTAGCAGAGGTTCAGTTTCTTGGA-GTAGTGAATCATCCG 822 |||||||||||||||||||||||||||||||||| ||| |||| || |||||||| || Sbjct 404 TACAGGGTCACAAGCAATGGCTAGCAGAGGTTCA-TTTGTTGGGCGTGGTGAATCACCCT 462 Query 823 AACGTTGTGAAGCTCATAGGTTATTGCTCGGAAGACGGCGAGACCGGGATCGAGAGGCTT 882 ||||| |||| |||| |||| ||||| || || ||| ||| | | |||| ||| Sbjct 463 AACGTAGTGAGGCTCTTAGGGTATTGTTCAGAGGAC----AGA--G--A--GAGA--CTT 510 Query 883 TTGGTTTATGAGTACATGTCGAATCGAAGTTTAGAAGACCATCTCTTCCCTCGTCGATCA 942 |||||||| |||| ||||| ||||| ||||| || || ||||||||| |||| | | Sbjct 511 TTGGTTTACGAGTTGATGTCTAATCGTAGTTTGGAGGATCATCTCTTCACTCGAAAAAC- 569 Query 943 CACA-CATTACCGTGGaaaaaaaGACTCGAGATCATGCTTGGTGCTGCTGAAGGATTGAC 1001 | | | || | |||||| |||| || ||||||||||||||||| ||| |||||||| | Sbjct 570 CTTAACGTTGTCATGGAAACAAAGGCTTGAGATCATGCTTGGTGCAGCTCAAGGATTGGC 629 Query 1002 TTATTTACATGATCTTAAGGTGATATATAGAGA-TTTCAAATCCTCTAATGTGCTTTTAG 1060 |||||| || || | |||| ||||| ||||| ||| ||||| || ||||||||||||| Sbjct 630 TTATTTGCACGAAATCCAGGTAATATACAGAGACTTT-AAATCATCAAATGTGCTTTTAG 688 Query 1061 ACGATCAATT-CTGTCCAAAATTATCGGACTTTGGGCTTGCCAGAGAAGGACCTGATGGC 1119 |||| |||| | ||| ||||||||||| ||||| || || |||||||| || || || Sbjct 689 ACGAAGAATTTCA-TCCGAAATTATCGGATTTTGGTCTCGCTAGAGAAGGTCCGGAAGGA 747 Query 1120 GACAATACTCATGTCACTACCGCAAGAGTTGGAACACACGGCTATGCGGCTCCGGAATAC 1179 ||||||||||| || || ||||||||| ||||||| |||||||||| || || || || Sbjct 748 GACAATACTCACGTTACAACCGCAAGAATTGGAACGGACGGCTATGCAGCACCAGAGTAT 807 Query 1180 GTGCA-AACAGGTCATCTTCGGTTAA-AGA--GCGACGTCTATAGCTTCGGTGTTGTGCT 1235 || | ||| || ||||| | || | | |||| ||||||||||| || ||||| | Sbjct 808 GTA-ATAACCGGCCATCT-CAA--AACACATTGCGATGTCTATAGCTTTGGAGTTGTTTT 863 Query 1236 CTACGAGATCATAACCGGACG-CAGAACCATTGAGAG-GAAC-AAGCCAGTGGCTGAACG 1292 ||||||||||| || || || | | || |||| || ||| || || ||||||||| Sbjct 864 GTACGAGATCATCACTGGTCGTC-GCAC-ATTG-GAACGAATGAAACCTTTGGCTGAACA 920 Query 1293 AAGGCTAT-TGGATTGGGTCAAAGAGTATCCTG-CTGATAGTCAAC-GTTTCAGCATGAT 1349 || ||| | | || |||||| |||| ||||||| | ||||| ||| | |||| | ||| Sbjct 921 AAAGCT-TCTAGAATGGGTCCAAGAATATCCTGTC-GATAG-CAAAAGATTCAAAAAGAT 977 Query 1350 CGTTGACCCTCGGTTACGCAACAATTATCCAGCTGC-T--GGAGCTAGGAGTTTGGCTAA 1406 | ||||||| | || |||| || |||| | || | | || | ||||| ||||||| Sbjct 978 CATTGACCCGAAGCTATGCAATAAATATC-ATCTTCCTATGGT-C-AGGAGAGTGGCTAA 1034 Query 1407 ATTGGCTGATCTTTGCCTGAAAAAGAACGATAAAGAGCGACCTACGATGG 1456 ||||||||||| ||| |||| |||| ||||||| || |||| || |||| Sbjct 1035 ATTGGCTGATCATTGTGTGAACAAGATCGATAAAAAGAGACCCACCATGG 1084 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65819943360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5