BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47070.1
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494273 jgi|Araly1|494273|fgenesh2_kg.8__89__AT5G47070.1 1964 0.0
Ahg890447 jgi|Araly1|890447|Al_scaffold_0007_2433 459 4e-128
> Ahg494273 jgi|Araly1|494273|fgenesh2_kg.8__89__AT5G47070.1
Length=1552
Score = 1964 bits (1063), Expect = 0.0
Identities = 1287/1386 (93%), Gaps = 51/1386 (4%)
Strand=Plus/Plus
Query 361 ttttttATCTC-TCTTTAAGACATGAACTGTCTGTTCTTGTTcaaatcaaagaaa--c-- 415
|||| |||||| || |||||||||||| ||||||||||||||||||||||||||| |
Sbjct 193 TTTTCTATCTCTTC-TTAAGACATGAATTGTCTGTTCTTGTTCAAATCAAAGAAACCCAA 251
Query 416 --ccagaaagcaacagaaag---------acaacaac---aagaacaaaagaaaaggtaa 461
||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 252 ATCCAGAAATCAACAGAAAGACAACAACAACAACAACAAAAAGAACAAAAGAAAAGGTAA 311
Query 462 agaGTTGTTACAAAACTCAGCTCCAGAACTGACGAATCGGAGTGAAACGTCTTCGTTTAA 521
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 312 AGAATTGTTACAAAACTCAGCTCCAGAACTGACTAATCGGAGTGAAACGTCGTCGTTTAA 371
Query 522 TCTCCAGACACCAAGATCGTTGCCTTCTCCAAGAAGTATCAAAGATTTGTATACAGAGAG 581
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TCTCCAGACGCCAAGATCGTTGCCTTCTCCAAGAAGTATCAAAGATTTGTATACAGAGAG 431
Query 582 AGAACAAAATCTTAGGGTTTTTTCTTACGAAGAACTCAGTAAAGCCACTTATGTGTTTAG 641
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||
Sbjct 432 AGAACAAAATCTTAGGGTTTTCACTTACGAAGAACTCAGTAAAGCCACTTATGGGTTCAG 491
Query 642 CAGAAAGCTTGTGATCGGTGAAGGTGGATTTGGTATTGTTTATAAAGGAAAGATTCTCAG 701
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CAGAAAGCTTGCGATCGGTGAAGGTGGATTTGGTATTGTTTATAAAGGAAAGATTCTCAA 551
Query 702 CAATGGAGATTCTTCTGATCCTCCACTTGTCGTTGCCATCAAGAAACTCAATCGACAAGG 761
||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 552 CAATGGAGA---TTCTGATCCTCCACTAGTCGTCGCCATTAAGAAACTCAATCGACAAGG 608
Query 762 TTTACAGGGTCACAAGCAATGGCTAGCAGAGGTTCAGTTTCTTGGAGTAGTGAATCATCC 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TTTACAGGGTCACAAGCAATGGCTAGCAGAGGTTCAGTTTCTTGGAGTAGTGAATCATCC 668
Query 822 GAACGTTGTGAAGCTCATAGGTTATTGCTCGGAAGACGGCGAGACCGGGATCGAGAGGCT 881
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 669 GAACGTTGTGAAGCTCATAGGTTATTGCTCGGAAGACGGCGAGACTGGGATCGAGAGGCT 728
Query 882 TTTGGTTTATGAGTACATGTCGAATCGAAGTTTAGAAGACCATCTCTTCCCTCGTCGATC 941
||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 729 TTTGGTTTATGAGTATATGTCGAATCGAAGTTTAGAGGACCATCTCTTTCCACGTCGATC 788
Query 942 ACACACATTACCGTGGaaaaaaaGACTCGAGATCATGCTTGGTGCTGCTGAAGGATTGAC 1001
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 789 ACACACATTACCGTGGAAAAAAAGACTCGAGATCATGCTTGGTGCAGCTGAAGGATTGGC 848
Query 1002 TTATTTACATGATCTTAAGGTGATATATAGAGATTTCAAATCCTCTAATGTGCTTTTAGA 1061
|||||||||||| |||||||| |||||| ||||||||||||| ||||||||||| |||||
Sbjct 849 TTATTTACATGAACTTAAGGTTATATATCGAGATTTCAAATCGTCTAATGTGCTCTTAGA 908
Query 1062 CGATCAATTCTGTCCAAAATTATCGGACTTTGGGCTTGCCAGAGAAGGACCTGATGGCGA 1121
| || |||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 909 CCATGAATTCTGTCCGAAATTATCAGACTTTGGGCTTGCCAGAGAAGGGCCTGAGGGCGA 968
Query 1122 CAATACTCATGTCACTACCGCAAGAGTTGGAACACACGGCTATGCGGCTCCGGAATACGT 1181
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 969 CAATACTCATGTCACTACCGCAAGAGTTGGTACACACGGCTATGCAGCTCCTGAATACGT 1028
Query 1182 GCAAACAGGTCATCTTCGGTTAAAGAGCGACGTCTATAGCTTCGGTGTTGTGCTCTACGA 1241
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1029 GCAAACAGGTCATCTTCGGTTAAAGAGCGATGTCTATAGCTTCGGTGTTGTGCTCTACGA 1088
Query 1242 GATCATAACCGGACGCAGAACCATTGAGAGGAACAAGCCAGTGGCTGAACGAAGGCTATT 1301
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GATCATAACCGGACGCCGAACCATTGAGAGGAACAAGCCAGTGGCTGAACGAAGGCTATT 1148
Query 1302 GGATTGGGTCAAAGAGTATCCTGCTGATAGTCAACGTTTCAGCATGATCGTTGACCCTCG 1361
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1149 GGATTGGGTGAAAGAGTATCCTGCTGATAGTCAACGGTTCAGCATGATCGTTGACCCTCG 1208
Query 1362 GTTACGCAACAATTATCCAGCTGCTGGAGCTAGGAGTTTGGCTAAATTGGCTGATCTTTG 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 GTTACGCAACAATTATCCAGCTGCTGGAGCTAGGAGTTTGGCTAAATTGGCTGATCTTTG 1268
Query 1422 CCTGAAAAAGAACGATAAAGAGCGACCTACGATGGAAATTGTAGTGGAAAGATTGAAAAA 1481
|||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 1269 TCTGAAAAAGAACGATAAAGAGCGACCCACAATGGAAATTGTAGTAGAAAGATTGAAAAA 1328
Query 1482 GATTATCGAAGAATCGGATAGTGAAGATTATCCGATGGCTACGACTACGACCAAGGAAAG 1541
||||||||||||||| |||| ||||||||||||||||||||| | | | ||||||||
Sbjct 1329 GATTATCGAAGAATCCGATAATGAAGATTATCCGATGGCTAC-A----G-CTAAGGAAAG 1382
Query 1542 TAGTCAGGTAAGGAGGAGACAAGTTGCAAAACCTGAGAAACAAAGTTTGAGAG--GGG-T 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1383 TAGTCAGGTAAGGAGGAGACAAGTTGCAAAACCTGAGAAACAAAGTTTGAGAGAAGGGGT 1442
Query 1599 TAGTGTCAGAGGATGATTTTGAGTTTAGAAGtttttttGCAAGTTTATATATTATAAATA 1658
||||||||||||||||||||||||||||||||||||| | | | | || | |
Sbjct 1443 TAGTGTCAGAGGATGATTTTGAGTTTAGAAGTTTTTT---A--T--A-A-AT-A-A---- 1487
Query 1659 AGTTTATGCAATTTGTTGGTTTATTGTGAGAT--T-AGTAGAGAAAATGTATCTTATTGT 1715
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1488 -GTTTATGCAATTTGTTGGTTTATTGTGAGATGATTAGTAGAGAAAATGTATCTTATTGT 1546
Query 1716 GTGTTT 1721
||||||
Sbjct 1547 GTGTTT 1552
Score = 137 bits (74), Expect = 2e-31
Identities = 95/105 (90%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 232 ATTTGTTCCATTTTCTCAATTTTAGAACTTAAGAAACCC-AAAAAGCAAATTTTTAGTAC 290
|||||||||||||||| ||||| ||||||| |||||||| |||||| ||| | |||||||
Sbjct 97 ATTTGTTCCATTTTCTTAATTTCAGAACTTGAGAAACCCAAAAAAGGAAACTATTAGTAC 156
Query 291 ATTTTCT-GGTTTAACTAAAGTAATTAATTTTTGTGTTTTCCATC 334
||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 157 ATTTTGTGGGTTTAACTAAAGTAATTAATTTTTGTGTTTTCTATC 201
Score = 84.2 bits (45), Expect = 3e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 157 ATAGATCTGTGTTCATACTCTTCTTCCACAATCTAACCCaaaaaaaaa 204
|||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 50 ATAGATCTGTGTTCATACTCTTCTTCCACAATCTAACCCAAAGAAAAA 97
> Ahg890447 jgi|Araly1|890447|Al_scaffold_0007_2433
Length=1176
Score = 459 bits (248), Expect = 4e-128
Identities = 853/1130 (75%), Gaps = 101/1130 (9%)
Strand=Plus/Plus
Query 382 ATGAACTGTCTGTTCTTGTTcaaatcaaagaaacccagaaa-gca-acagaaagac--aa 437
||||| ||| ||||| ||||||| || |||||| ||| ||| || | ||||| | ||
Sbjct 1 ATGAATTGTATGTTCGTGTTCAAGTCCAAGAAA-CCA-AAATCCAGA-AGAAA-TCTGAA 56
Query 438 caaca-agaac-aaaaga-aa-aggtaa-agaGTTGTTACAAAACTCAGCTCCAGAACTG 492
|| | | ||| |||| | || ||| || |||||| |||||||| || ||||||||| |
Sbjct 57 GAA-AGATAACAAAAACATAAGAGG-AAGAGAGTTTTTACAAAAGTCTGCTCCAGAATTA 114
Query 493 ACGAATCGGAGTGA-AACGTC--T-TCGTTTAATCT-CCAGACACCAAGATCGT-TGCCT 546
||| | | || | ||| || | ||||| ||||| ||| ||||||||||| | ||||
Sbjct 115 ACG-A-C-AAG-AAGAACATCTTTGTCGTTCAATCTCCCA-ACACCAAGATC-TCTGCCA 168
Query 547 TCTCCAA-GAAGTATCAAAGATTTGTATAC--AGAGAGAG---AA-CAAAAT------CT 593
||||||| | ||||||||||| ||||| || |||||||| || |||||| ||
Sbjct 169 TCTCCAACG-AGTATCAAAGACTTGTACACTGAGAGAGAGCAAAATCAAAATCAAAACCT 227
Query 594 TAGGGTTTTTTCTTACGAA-GAACTCAGTAAAGCCACTTATGTGTTTAGCAGAAAGCTTG 652
| |||||| |||||| || ||||| ||| | ||||| | || |||||||||||||| ||
Sbjct 228 AATGGTTTTCTCTTAC-AAGGAACTGAGTGACGCCACGTGTGAGTTTAGCAGAAAGC-TG 285
Query 653 -TGATCGGTGAAGGTGGATTTGGTATTGTTTATAAAG-GA--A---AGATTCTCAGC-AA 704
|||||| |||||||| ||||||| ||| ||||||| | | | | || || | |
Sbjct 286 AAGATCGGAGAAGGTGGTTTTGGTAGTGTCTATAAAGCCACCATTGACAATCCCACCGGA 345
Query 705 TGGAGATTCTTC-TGATCCTCCACTTGTCGTTGCCATCAAGAAACTCAATCGACAAGGTT 763
|||||||| || | | |||||||| ||| ||||| |||||||| ||||||||| ||
Sbjct 346 -GGAGATTC-TCATTCTTCTCCACTTACCGTCGCCATTAAGAAACTTAATCGACAAAGTC 403
Query 764 TACAGGGTCACAAGCAATGGCTAGCAGAGGTTCAGTTTCTTGGA-GTAGTGAATCATCCG 822
|||||||||||||||||||||||||||||||||| ||| |||| || |||||||| ||
Sbjct 404 TACAGGGTCACAAGCAATGGCTAGCAGAGGTTCA-TTTGTTGGGCGTGGTGAATCACCCT 462
Query 823 AACGTTGTGAAGCTCATAGGTTATTGCTCGGAAGACGGCGAGACCGGGATCGAGAGGCTT 882
||||| |||| |||| |||| ||||| || || ||| ||| | | |||| |||
Sbjct 463 AACGTAGTGAGGCTCTTAGGGTATTGTTCAGAGGAC----AGA--G--A--GAGA--CTT 510
Query 883 TTGGTTTATGAGTACATGTCGAATCGAAGTTTAGAAGACCATCTCTTCCCTCGTCGATCA 942
|||||||| |||| ||||| ||||| ||||| || || ||||||||| |||| | |
Sbjct 511 TTGGTTTACGAGTTGATGTCTAATCGTAGTTTGGAGGATCATCTCTTCACTCGAAAAAC- 569
Query 943 CACA-CATTACCGTGGaaaaaaaGACTCGAGATCATGCTTGGTGCTGCTGAAGGATTGAC 1001
| | | || | |||||| |||| || ||||||||||||||||| ||| |||||||| |
Sbjct 570 CTTAACGTTGTCATGGAAACAAAGGCTTGAGATCATGCTTGGTGCAGCTCAAGGATTGGC 629
Query 1002 TTATTTACATGATCTTAAGGTGATATATAGAGA-TTTCAAATCCTCTAATGTGCTTTTAG 1060
|||||| || || | |||| ||||| ||||| ||| ||||| || |||||||||||||
Sbjct 630 TTATTTGCACGAAATCCAGGTAATATACAGAGACTTT-AAATCATCAAATGTGCTTTTAG 688
Query 1061 ACGATCAATT-CTGTCCAAAATTATCGGACTTTGGGCTTGCCAGAGAAGGACCTGATGGC 1119
|||| |||| | ||| ||||||||||| ||||| || || |||||||| || || ||
Sbjct 689 ACGAAGAATTTCA-TCCGAAATTATCGGATTTTGGTCTCGCTAGAGAAGGTCCGGAAGGA 747
Query 1120 GACAATACTCATGTCACTACCGCAAGAGTTGGAACACACGGCTATGCGGCTCCGGAATAC 1179
||||||||||| || || ||||||||| ||||||| |||||||||| || || || ||
Sbjct 748 GACAATACTCACGTTACAACCGCAAGAATTGGAACGGACGGCTATGCAGCACCAGAGTAT 807
Query 1180 GTGCA-AACAGGTCATCTTCGGTTAA-AGA--GCGACGTCTATAGCTTCGGTGTTGTGCT 1235
|| | ||| || ||||| | || | | |||| ||||||||||| || ||||| |
Sbjct 808 GTA-ATAACCGGCCATCT-CAA--AACACATTGCGATGTCTATAGCTTTGGAGTTGTTTT 863
Query 1236 CTACGAGATCATAACCGGACG-CAGAACCATTGAGAG-GAAC-AAGCCAGTGGCTGAACG 1292
||||||||||| || || || | | || |||| || ||| || || |||||||||
Sbjct 864 GTACGAGATCATCACTGGTCGTC-GCAC-ATTG-GAACGAATGAAACCTTTGGCTGAACA 920
Query 1293 AAGGCTAT-TGGATTGGGTCAAAGAGTATCCTG-CTGATAGTCAAC-GTTTCAGCATGAT 1349
|| ||| | | || |||||| |||| ||||||| | ||||| ||| | |||| | |||
Sbjct 921 AAAGCT-TCTAGAATGGGTCCAAGAATATCCTGTC-GATAG-CAAAAGATTCAAAAAGAT 977
Query 1350 CGTTGACCCTCGGTTACGCAACAATTATCCAGCTGC-T--GGAGCTAGGAGTTTGGCTAA 1406
| ||||||| | || |||| || |||| | || | | || | ||||| |||||||
Sbjct 978 CATTGACCCGAAGCTATGCAATAAATATC-ATCTTCCTATGGT-C-AGGAGAGTGGCTAA 1034
Query 1407 ATTGGCTGATCTTTGCCTGAAAAAGAACGATAAAGAGCGACCTACGATGG 1456
||||||||||| ||| |||| |||| ||||||| || |||| || ||||
Sbjct 1035 ATTGGCTGATCATTGTGTGAACAAGATCGATAAAAAGAGACCCACCATGG 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65819943360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5