BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G47077.1

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg915355 jgi|Araly1|915355|Al_scaffold_0008_106                     274    2e-73


> Ahg915355 jgi|Araly1|915355|Al_scaffold_0008_106
Length=222

 Score =  274 bits (148),  Expect = 2e-73
 Identities = 193/214 (90%), Gaps = 5/214 (2%)
 Strand=Plus/Plus

Query  16   TTTCTTTTTGTCTACATCATCCTTATTCTAGGATCGATGGTGAATGAGATTCAAGGACAA  75
            ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  13   TTTTTTTTTGTTTACATCATTCTTATTCTAGGATCGATGGTGAATGAGATTCAAGGACAA  72

Query  76   CATGCAATGTGTCATGAGATTTTACCGGAAACTGATTGTGGTGCTGGTTCGTGTACCGCT  135
             |  || ||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||
Sbjct  73   -AC-CA-TGTGTCATGAGATTTTACCAGAAACAGATTGTGGTGTTGGCTCGTGTACCGCT  129

Query  136  TTATGCTTACAGTTATGGAGAGGAACCGGCAAATGTGTTAGAACAAATGATCAGAAA-TT  194
            || |||||||| |||||||||||||||||||| ||||||||||||||||||| ||   ||
Sbjct  130  TTGTGCTTACAATTATGGAGAGGAACCGGCAAGTGTGTTAGAACAAATGATC-GACGCTT  188

Query  195  AATATGTCTCTGCAATTTTGAGTGCATTGTTTGA  228
            |||||| |||||||||||||| ||||| ||||||
Sbjct  189  AATATGCCTCTGCAATTTTGAATGCATAGTTTGA  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7828593505


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5