BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47080.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494272 jgi|Araly1|494272|fgenesh2_kg.8__88__AT5G47080.1 1659 0.0
Ahg493113 jgi|Araly1|493113|fgenesh2_kg.7__2546__AT4G17640.1 730 0.0
Ahg483599 jgi|Araly1|483599|fgenesh2_kg.4__2659__AT2G44680.1 412 3e-114
> Ahg494272 jgi|Araly1|494272|fgenesh2_kg.8__88__AT5G47080.1
Length=1220
Score = 1659 bits (898), Expect = 0.0
Identities = 1140/1248 (91%), Gaps = 51/1248 (4%)
Strand=Plus/Plus
Query 41 aagcaaaaCCCTAGAGCTCAAGGTAATCGCCGTCGATTTCTCAATCTCTCACCGGCGATT 100
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 19 AAGCAAAACCCTAGAGCTCAAGCTAATCGCCGTCGATTTCTCAATCTCTCACCGGCGATT 78
Query 101 ACATGCCGATGAAAGTTGTACAATAGCTGCTGTAAGAGAGAGATTTATCAGGTATTTTTA 160
| |||| |||||||||||||||| ||||||||||||| ||| || ||||| |||||
Sbjct 79 TTAAGCCGGTGAAAGTTGTACAATA---GCTGTAAGAGAGATATTCATTAGGTA-TTTTA 134
Query 161 GAATCATGTATAGAGACAGAGGAACGGTGAATTCGAGACCTGAAGTTGTGGATCGTAAAC 220
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 GAACCATGTATAGAGACAGAGGAACGGTGAATTCGAGACCTGAAGTTGTGGATCGTAAAC 194
Query 221 GGATCAACGACGCTCTTGAACGTCCTTCTCCTTCAACCTCTCGTCAAGTTAACGGCAAAG 280
|||||||||||||||| ||||| |||||||| ||||| |||||||||||||| || ||||
Sbjct 195 GGATCAACGACGCTCTCGAACGACCTTCTCCGTCAACGTCTCGTCAAGTTAATGGTAAAG 254
Query 281 GCAAAGGAACCGTTACGGCGGCGACGACG-ACGGCGAACTTGATTGGGAAGCAGCAGTCG 339
||||||| | |||||||||||| || || || ||||||||||||||||||||
Sbjct 255 GCAAAGG-A-----ACGGCGGCGACGGCGAACTCCG-TTTTGATTGGGAAGCAGCAGTC- 306
Query 340 AATAACATCAACCATAGAGATTCTCGTTCTGCTTCTCTCTCGAAGAACAATACGGTTTCT 399
| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 307 --T--CAT-GACCATAGAGATTCTCGTTCTGCTTCTCTCTCGAAGAACAATAATGTTTCT 361
Query 400 GATGATGAATCAGACACAGATAGTGAAGAATCAGATGTGAGTGGTTCTGATGGAGAGGAC 459
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 362 GATGATGAATCAGACACGGATAGTGAAGAATCGGATGTTAGTGGTTCTGATGGAGAGGAT 421
Query 460 ACTTCATGGATATCTTGGTTTTGTAATCTAAGAGGAAACGAGTTCTTTTGTGAAGTTGAT 519
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 422 ACTTCATGGATATCTTGGTTTTGTAATCTACGAGGAAACGAGTTCTTTTGTGAAGTTGAT 481
Query 520 GATGATTACATTCAAGATGACTTCAACTTGTGTGGACTCAGCAGTCTAGTTCCCTACTAC 579
|||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 482 GATGATTATATTCAAGATGACTTTAACCTGTGTGGACTCAGCAGTCTTGTTCCCTACTAC 541
Query 580 GAGTACGCTCTTGATTTGATTTTGGATGTTGAATCTTCTCAAGGAGAGATGTTTACAGAG 639
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 542 GAGTACGCTCTTGATTTGATTTTGGATGTTGAATCTTCTCATGGAGAGATGTTTACAGAG 601
Query 640 GAACAGAATGAATTGATCGAGTCAGCAGCTGAGATG-TTGTATGGACTGATTCATGCTCG 698
|||||||||||||||||||||||||||||||||||| || || ||| ||||||| |||||
Sbjct 602 GAACAGAATGAATTGATCGAGTCAGCAGCTGAGATGCTT-TACGGATTGATTCACGCTCG 660
Query 699 TTACATATTGACTAGCAAAGGATTGGCAGCAATGTTAGACAAATACAAAAACTATGACTT 758
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 661 TTACATATTGACTAGCAAAGGATTGGCTGCGATGTTAGACAAATACAAAAACTATGACTT 720
Query 759 TGGAAGATGTCCAAGAGTTTATTGCTGTGGCCAACCTTGTCTTCCGGTTGGTCAATCAGA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 TGGAAGATGTCCAAGAGTTTATTGCTGTGGCCAACCTTGTCTTCCGGTTGGTCAATCGGA 780
Query 819 CTTACCGCGATCTAGCACTGTGAAGATATATTGCCCGAAATGCGAAGACATTTATTACCC 878
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTTACCTCGATCTAGCACTGTGAAGATATATTGCCCGAAATGCGAAGACATTTATTACCC 840
Query 879 ACGATCAAAGTATCAAGGCAACATTGATGGAGCTTACTTTGGGACAACGTTTCCACATCT 938
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 841 ACGGTCGAAGTATCAAGGCAACATTGATGGAGCTTACTTTGGGACAACATTTCCACATCT 900
Query 939 GTTCCTGATGACTTATGGGCATCTCAAGCCAGCGAAGGCAACACAAAACTATGTTCAAAG 998
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 901 GTTCCTGATGACTTATGGGCATCTCAAGCCATCAAAGGCAACGCAAAACTATGTTCAAAG 960
Query 999 AGTGTTTGGGTTCAAATTACACAAACCGTGAAGGAAGTTTGACGACAAAACCCAAGGATC 1058
||| ||||||||||||||||| || ||||||||||||||| | ||||| |||||| |||
Sbjct 961 AGTTTTTGGGTTCAAATTACATAAGCCGTGAAGGAAGTTTAAAGACAA--CCCAAGAATC 1018
Query 1059 AAGATCATGGCGTTGGAATGGAACTGAGAAAAGAAGAGACGTGTGTGAACAGAAACGGAA 1118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 AAGATCATGGCGTTGGAATGGAACTGAGAAAAGAAGAGACGTGTGTGAACAGAAACGGGA 1078
Query 1119 AATAAAACGCACTGTAATCACACGAATGGTGAAGAGAGCATTCATGTCTCTATTTGTCTT 1178
|||||| ||| |||||||||||||||||||||||||||||||||| | |
Sbjct 1079 AATAAA-CGCGCTGTAATCACACGAATGGTGAAGAGAGCATTCAT------A-----C-- 1124
Query 1179 CAGGTACATACACATTAGAAGAAAGCAAAAGCATGGTTAG-AAAGaaaaaaaaCACGAAA 1237
| ||| | |||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 1125 -A----CAT-----T-AGAAGAAAGCAAAAGCATGGTTAGGAAAAAAAAAAAAG-CGAAA 1172
Query 1238 ATCTTTTAATGAGTTTGTTAAA--CTTGAACATGTATTTTTCTACCTT 1283
||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1173 ATCTTTTGATGAGTTTGTTAAAAACTTGAACATGTATTTTTCTACCTT 1220
> Ahg493113 jgi|Araly1|493113|fgenesh2_kg.7__2546__AT4G17640.1
Length=1289
Score = 730 bits (395), Expect = 0.0
Identities = 595/691 (86%), Gaps = 15/691 (2%)
Strand=Plus/Plus
Query 353 ATAGAGATTCTCGTTCTGCTTCTCTCTCGAAG---AACAATACGGTTTCTGAT-GATGA- 407
|||| ||||| ||||||| |||| |||| ||| |||| | | | ||| | ||| |
Sbjct 389 ATAGGGATTCACGTTCTGGTTCTATCTCCAAGACTAACATTTCCGACGCTG-TAGAT-AT 446
Query 408 ATCAGACACAGATAGTGAAGAATCAGATGTGAGTGGTTCTGATGGAGAGGACACTTCATG 467
|||||||||||| |||||||||||||| || |||||||||||||||||||| || |||||
Sbjct 447 ATCAGACACAGACAGTGAAGAATCAGAGGTTAGTGGTTCTGATGGAGAGGATACCTCATG 506
Query 468 GATATCTTGGTTTTGTAATCTAAGAGGAAACGAGTTCTTTTGTGAAGTTGATGATGATTA 527
|||||| ||||| || || ||| | || ||||||||||| ||||||||||||||||||||
Sbjct 507 GATATCGTGGTTCTGCAACCTACGTGGGAACGAGTTCTTCTGTGAAGTTGATGATGATTA 566
Query 528 CATTCAAGATGACTTCAACTTGTGTGGACTCAG-CAGTCTAGTTCCCTACTACGAGTACG 586
||| || |||||||| ||||||||||||||||| || || |||||| |||||||| || |
Sbjct 567 CATCCAGGATGACTTTAACTTGTGTGGACTCAGCCA-TCAAGTTCCTTACTACGACTATG 625
Query 587 CTCTTGATTTGATTTTGGATGTTGAATCTTCTCAAGGAGAGATGTTTACAGAGGAACAGA 646
| |||||||||||||||||||| || ||||| || || |||||||||||||| || ||||
Sbjct 626 CCCTTGATTTGATTTTGGATGTGGAGTCTTCGCATGGTGAGATGTTTACAGAAGAGCAGA 685
Query 647 ATGAATTGATCGAGTCAGCAGCTGAGATGTTGTATGGACTGATTCATGCTCGTTACATAT 706
|||||||||||||||||||||| |||||| | |||||| |||||||||||||||||||||
Sbjct 686 ATGAATTGATCGAGTCAGCAGCAGAGATGCTATATGGAATGATTCATGCTCGTTACATAT 745
Query 707 TGACTAGCAAAGGATTGGCAGCAATGTTAGACAAATACAAAAACTATGACTTTGGAAGAT 766
|||| |||||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 746 TGACAAGCAAAGGGCTGGCTTCTATGTTAGACAAATACAAAAACTATGACTTTGGAAGAT 805
Query 767 GTCCAAGAGTTTATTGCTGTGGCCAACCTTGTCTT-CCGGTTGGTCAATCAGACT-TACC 824
| |||||||||||||| ||||||||||||||| || || ||||||||||| || | | ||
Sbjct 806 GCCCAAGAGTTTATTGTTGTGGCCAACCTTGT-TTACCAGTTGGTCAATCCGA-TATCCC 863
Query 825 GCGATCTAGCACTGTGAAGATATATTGCCCGAAATGCGAAGACATTTATTACCCACGATC 884
||| | ||||| || |||||||||||||| ||||| |||||| | ||||||||||||||
Sbjct 864 TCGAGCAAGCACCGTAAAGATATATTGCCCCAAATGTGAAGACGTCTATTACCCACGATC 923
Query 885 AAAGTATCAAGGCAACATTGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCCT 944
||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 924 AAAATACCAAGGAAACATAGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCTT 983
Query 945 GATGACTTATGGGCATCTCAAGCCAGCGAA-GGCAACACAAAACTATGTTCAAAGAGTGT 1003
|||||| || || ||||| |||||| | || |||| |||||| ||| || ||||||||
Sbjct 984 GATGACGTACGGACATCTGAAGCCA-CAAAAGGCATCACAAAGCTACACTCCAAGAGTGT 1042
Query 1004 TTGGGTTCAAATTACACAAACCGTGAAGGAA 1034
|||||||||| |||||||| |||||||||||
Sbjct 1043 TTGGGTTCAAGTTACACAAGCCGTGAAGGAA 1073
> Ahg483599 jgi|Araly1|483599|fgenesh2_kg.4__2659__AT2G44680.1
Length=1355
Score = 412 bits (223), Expect = 3e-114
Identities = 506/640 (79%), Gaps = 30/640 (5%)
Strand=Plus/Plus
Query 398 CTGATGAT-GAATCAGACACAGATAGTGAAGAATCAGATGTGAGTGGTTCTGATGGAGAG 456
|||||| | ||||| || || |||||||||| |||||||||||||||||| || || ||
Sbjct 412 CTGATG-TAGAATCTGAAACGGATAGTGAAGGATCAGATGTGAGTGGTTCAGAAGGTGAT 470
Query 457 GACACTTCATGGATATCTTGGTTTTGTAATCTAAGAGGAAACGAGTTCTTT-TGTGAAGT 515
|| || || ||||| || |||||||||||| | ||||| || ||||| ||| ||||||||
Sbjct 471 GATACATCGTGGATCTCATGGTTTTGTAATTTGAGAGGGAATGAGTT-TTTCTGTGAAGT 529
Query 516 TGATGATGATTACATTCAAGATGACTTCAACT-TGTGTGGACTCAGCAGTCTAGTTCCCT 574
||||| ||||| || |||||||| || || | | |||||| | || ||| |||||| |
Sbjct 530 AGATGAAGATTATATACAAGATGATTTTAA-TCTCTGTGGATTGAGTGGTCAAGTTCCTT 588
Query 575 ACTACGAGTACGCTCTTGATTTGATTTTGGATGTTGAATCTTCTCAA-GGAGAGATGTTT 633
|||| || || || |||||| | ||||| ||||||||||| || || || || ||||||
Sbjct 589 ACTATGATTATGCACTTGATCTCATTTTAGATGTTGAATCATC-AAATGGTGATATGTTT 647
Query 634 ACAGAGGAACAGAATGA-ATTGATCGAGTCAGCAGCTGAGATGTTGTATGGACTGATTCA 692
|| || ||||||||||| | || | || ||||| ||||||||||| ||||| || |||||
Sbjct 648 ACTGAAGAACAGAATGAGA-TGGTGGAATCAGCTGCTGAGATGTTATATGGTCTTATTCA 706
Query 693 TGCTCGTTACATAT-TGACTAGC-AAAGGATTGGCAGCAATGTTAGACAAATACAAAAAC 750
|| |||||| || | | |||| | |||||| |||| || ||| | || || || || ||
Sbjct 707 TGTTCGTTATAT-TCTCACTA-CTAAAGGAATGGCTGCTATGATGGAGAAGTATAAGAAT 764
Query 751 TATGACTTT-GGAAGATGTCCAAGAGTTTAT-TGCTGTGGCCAACCTTGTCTTCCGGTTG 808
|| || ||| || |||||||| ||||||| | || ||||| ||| |||||||||||||||
Sbjct 765 TACGA-TTTCGGGAGATGTCCCAGAGTTT-TCTGTTGTGGGCAATCTTGTCTTCCGGTTG 822
Query 809 GTCAATCAGACT-TACCGCGATCTAGCACTGTGAAGATATATTGCCCGAAATGCGAAGAC 867
| ||||| || | | ||| | || ||||||||||||||||| ||||| |||||||| ||
Sbjct 823 GGCAATCTGA-TATCCCGAGGTCGAGCACTGTGAAGATATACTGCCCAAAATGCGAGGAT 881
Query 868 ATTTATTACCCACGATC-AAAGTATCAAGGCAACATTGATGGAGCTTACTTTGGGACAAC 926
||||| ||||| ||||| ||| || ||||||||||||||||||||||||||||| || ||
Sbjct 882 ATTTACTACCCGCGATCTAAA-TACCAAGGCAACATTGATGGAGCTTACTTTGGAACTAC 940
Query 927 GTTTCCA-CATCTGTTCCTGATGACTTATGGGCATC-TCAAGCCAGC-GAAGGCAACACA 983
||||| ||| |||| || ||| | |||||| | | | || ||| | |||| | ||
Sbjct 941 -TTTCCCTCATTTGTTTCTCATGGCCTATGGGAA-CATGAAACCA-CAGAAGCCGGTTCA 997
Query 984 AAACTATGTTCA-AAGAGTGTTTGGGTTCAAATTACACAA 1022
||||||||||| |||| | ||||| || || |||||||
Sbjct 998 AAACTATGTTCCTAAGA-TCTTTGGCTTTAAGGTACACAA 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5