BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47090.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948218 jgi|Araly1|948218|scaffold_800105.1 1282 0.0
Ahg915337 jgi|Araly1|915337|Al_scaffold_0008_88 592 3e-168
Ahg356289 jgi|Araly1|356289|fgenesh1_pg.C_scaffold_8000076 261 9e-69
> Ahg948218 jgi|Araly1|948218|scaffold_800105.1
Length=996
Score = 1282 bits (694), Expect = 0.0
Identities = 894/983 (91%), Gaps = 43/983 (4%)
Strand=Plus/Plus
Query 3 AGA-GAGGAGAACAATGGAAGAGAAGAAGAAGACGATGGAGATGGAAGCAACAACAATGA 61
||| |||||||||||||| | || |||||||||||||||| | |||| | || ||||||
Sbjct 8 AGAGGAGGAGAACAATGG-A-AG-AGAAGAAGACGATGGA-A-GGAA-C-AC--CAATGA 58
Query 62 AAGGCACGGCGGCGGAAGATATAACGGAGAGACTCTCTTCTCTCGACAATCTCTATTTTC 121
||| ||||||||| ||||| ||||||| |||| | |||||||||||||| ||||||||||
Sbjct 59 AAGACACGGCGGCCGAAGAAATAACGGCGAGATTGTCTTCTCTCGACAACCTCTATTTTC 118
Query 122 CACGCGCCGTCCAATTAACCGCTGCATCTTCCGACCAACGCAAATCCATCCTCCTCGACC 181
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 119 CACGCGCCGTCCAATTAACCGCCGCATCTTCCGACCAACGCAAATCCATCCTCCTCGACC 178
Query 182 TCCTCCGTCGTGATCCCGCCGTTTTTCTAGAGAGATATGGATCGGAGCTACTAGTAGATG 241
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 179 TCCTCCGTCGTGATCCCGCCGTTTTTCTCGAGAGATATGGATCGGAGCTGCTAGTAGATG 238
Query 242 AATTGCTTGAGTTTGATGCTATGAAACATGACTACGAGGTTGATTGGCATTTGAAAAACC 301
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 AATTGCTTGAGTTTGATGCTATGAAACATGACTACGAGGTTGATTGGCACTTGAAAAACC 298
Query 302 TGCGGAAGAAGATAAGTCCGACTTCAGAAGAGATTAAATCGAGGTCTGTAGCTGTGAGGA 361
||||||||||||||||||||||||| |||||| ||||||| |||| ||||||||| ||||
Sbjct 299 TGCGGAAGAAGATAAGTCCGACTTCGGAAGAGCTTAAATCTAGGTGTGTAGCTGTCAGGA 358
Query 362 ATAGGAGATTGGCTTATTTGAATAAGCTTGTATCCGAGGGACAGTATTTCTCAGAGGATG 421
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 ATAGAAGATTGGCTTACTTGAATAAGCTTGTATCCGAGGGACAGTATTTCTCTGAGGATG 418
Query 422 CTATGAGAGATAGAGAGCCGTATCTACATCATGAGTATGTTGGGAAGTTTCAGGATGTGA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTATGAGAGATAGAGAGCCGTATCTACATCATGAGTATGTTGGGAAGTTTCAGGATGTGA 478
Query 482 TGGGAAGGAACATGGCTAGGCCTGGAGAACGTTGGTCTGAGACTTTGATGAGACGGGCTG 541
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 479 TGGGTAGGAATATGGCTAGGCCTGGAGAACGTTGGTCTGAGACGTTGATGAGAAGGGCAG 538
Query 542 AGGAAGCGGTGTTGGTTACTCGTATTAGAGAGGAGCAGCAGAGGTTAGGTGTTTCAGAGA 601
|||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 539 AGGAAGCGGTTTTGGTTACTCGGATTAGAGAGGAGCAGCAGAGGTTAGGTGTTGCAGAGA 598
Query 602 GTGATTGGGTTGGTAATgagaagatggaggaatcagaagaagaggaagaggaggaatc-- 659
|||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 599 GTGATTGGATTGGTAATGAGAAGATGGAGGAATCAGAAGAAGAAGAAGAAGAGGAAGAGG 658
Query 660 ag-aagaggaggaagaagaagaagatgaagaagcgaagaatcctacagaagCTAGCTC-- 716
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGAAGAAGAGGAATCGGAAGAAGATGAAGAAGCGAAGAATCCTACAGAAGCTAGCTCAA 718
Query 717 ---TT---CA----A-G--T--C--TG-AA--TGG--T-A-A-AGAACAGAA-AGAGAAG 750
|| || | | | | || || | | | | | |||||| || | | |||
Sbjct 719 GCCTTGAACAGGTTACGGATATCAATGGAACATTGCATGATAGAGAACATAACA-ACAAG 777
Query 751 GCAACAACAGTCTTACCGCCAGAGGAGATGCAAGATATGATGGATCAGTTCACATCAATC 810
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 778 GCAACAACCGTCTTACCGCCGGAGGAGATGCAAGATATGATGGAGCAGTTCACATCAATC 837
Query 811 ATGGAACAGAAGTTCTTATCGGGAGAAGATCATCAACATTTGGATTACGCAAAGATAGAC 870
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 838 ATGCAACAGAAGTTCTTATCGGGAGAAGATCATCAACATTTGGATTACACAAAGATAGAC 897
Query 871 AATGACGAGACTCTTGATGATCATTGGCTTCGAGAGATTGGCCGTGACGCTGAAGATAAG 930
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 898 AATGACGAGACTCTTGATGATCATTGGCTTCGAGAGATTGGCCTTGACGCTGAAGATAAG 957
Query 931 TACTTTGATGAAGACTAATTGGA 953
||||||| ||||||||||| |||
Sbjct 958 TACTTTGGTGAAGACTAAT-GGA 979
> Ahg915337 jgi|Araly1|915337|Al_scaffold_0008_88
Length=516
Score = 592 bits (320), Expect = 3e-168
Identities = 457/517 (88%), Gaps = 33/517 (6%)
Strand=Plus/Plus
Query 433 AGAGAGCCGTATCTACATCATGAGTATGTTGGGAAGTTTCAGGATGTGATGGGAAGGAAC 492
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 AGAGAGCCTTATCTACATCATGAGTATGTTGGGAAGTTTCAGGATGTGATGGGTAGGAAT 60
Query 493 ATGGCTAGGCCTGGAGAACGTTGGTCTGAGACTTTGATGAGACGGGCTGAGGAAGCGGTG 552
|||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 61 ATGGCTAGGCCTGGAGAACGTTGGTCTGAGACGTTGATGAGAAGGGCAGAGGAAGCGGTT 120
Query 553 TTGGTTACTCGTATTAGAGAGGAGCAGCAGAGGTTAGGTGTTTCAGAGAGTGATTGGGTT 612
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 121 TTGGTTACTCGGATTAGAGAGGAGCAGCAGAGGTTAGGTGTTGCAGAGAGTGATTGGATT 180
Query 613 GGTAATgagaagatggaggaatcagaagaagaggaagaggaggaatc--ag-aagaggag 669
|||||||||||||||||||||||||||||||| ||||| |||||| || |||| |||
Sbjct 181 GGTAATGAGAAGATGGAGGAATCAGAAGAAGAAGAAGAAGAGGAAGAGGAGGAAGAAGAG 240
Query 670 gaagaagaagaagatgaagaagcgaagaatcctacagaagCTAGCTC-----TT---CA- 720
||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 241 GAATCGGAAGAAGATGAAGAAGCGAAGAATCCTACAGAAGCTAGCTCAAGCCTTGAACAG 300
Query 721 ---A-G--T--C--TG-AA--TGG--T-A-A-AGAACAGAA-AGAGAAGGCAACAACAGT 761
| | | | || || | | | | | |||||| || | | ||||||||||| ||
Sbjct 301 GTTACGGATATCAATGGAACATTGCATGATAGAGAACATAACA-ACAAGGCAACAACCGT 359
Query 762 CTTACCGCCAGAGGAGATGCAAGATATGATGGATCAGTTCACATCAATCATGGAACAGAA 821
||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 360 CTTACCGCCGGAGGAGATGCAAGATATGATGGAGCAGTTCACATCAATCATGCAACAGAA 419
Query 822 GTTCTTATCGGGAGAAGATCATCAACATTTGGATTACGCAAAGATAGACAATGACGAGAC 881
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 GTTCTTATCGGGAGAAGATCATCAACATTTGGATTACACAAAGATAGACAATGACGAGAC 479
Query 882 TCTTGATGATCATTGGCTTCGA-GAGATTGGCCGTGA 917
|||||||||||||||||||||| |||||||||| |||
Sbjct 480 TCTTGATGATCATTGGCTTCGAAGAGATTGGCCTTGA 516
> Ahg356289 jgi|Araly1|356289|fgenesh1_pg.C_scaffold_8000076
Length=1443
Score = 261 bits (141), Expect = 9e-69
Identities = 195/219 (89%), Gaps = 12/219 (5%)
Strand=Plus/Plus
Query 735 AGAACAGAA-AGAGAAGGCAACAACAGTCTTACCGCCAGAGGAGATGCAAGATATGATGG 793
||||||||| | | ||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 1221 AGAACAGAACA-ACAAGGC-A-AACAGTCATACCGCCAGAGGAGATGCAAGATATGATGG 1277
Query 794 ATCAG--------TTCACATCAATCATGGAACAGAAGTTCTTATCGGGAGAAGATCATCA 845
||||| ||||||||||||||| |||| |||||||||| |||||||||||||||
Sbjct 1278 ATCAGTTCACAACTTCACATCAATCATGCAACAAAAGTTCTTATTGGGAGAAGATCATCA 1337
Query 846 ACATTTGGATTACGCAAAGATAGACAATGACGAGACTCTTGATGATCATTGGCTTCGAGA 905
||||||||||||| || || || |||||||||||||||||||||||||||||||||||||
Sbjct 1338 ACATTTGGATTACACAGAGTTAAACAATGACGAGACTCTTGATGATCATTGGCTTCGAGA 1397
Query 906 GATTGGCCGTGACGCTGAAGATAAGTACTTTGATGAAGA 944
|||||||| |||||||||||| |||||||||| ||||||
Sbjct 1398 GATTGGCCTTGACGCTGAAGAAAAGTACTTTGGTGAAGA 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5