BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47100.1 Length=1223 Score E Sequences producing significant alignments: (Bits) Value Ahg948205 jgi|Araly1|948205|scaffold_800092.1 1107 0.0 Ahg946460 jgi|Araly1|946460|scaffold_702689.1 699 0.0 > Ahg948205 jgi|Araly1|948205|scaffold_800092.1 Length=682 Score = 1107 bits (599), Expect = 0.0 Identities = 657/685 (96%), Gaps = 3/685 (0%) Strand=Plus/Plus Query 304 GTTTTACTCTTGTCATCCGTAAATGGGTTGTTTCCATTCCACGGCTGCCAGAGAATTTCC 363 |||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 GTTTTA--CTTGTCATCTGTAAATGGGTTGTTTCCATTCCACGGCTGCGAGAGAATTTCC 58 Query 364 CGATCACGAAAACCCTGTGAAGCTTGCTTCTGAGACTGCTTTTAGTGTTAGTGAAGTTGA 423 | |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 59 TGGTCACGAGAACCCTGTGAAGCTAGCTTCTGAGACTGCTTTTAGTGTTAGTGAAGTTGA 118 Query 424 AGCATTGTATGAATTGTTCAAGAGCATAAGCAGCTCGGTTGTTGACGATGGCTTGATAAA 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 AGCATTGTATGAATTGTTCAAGAGCATAAGCAGCTCGGTTGTTGACGATGGCTTGATAAA 178 Query 484 CAAGGAAGAGTTTCAACTTGCTTTGTTCAAGAACAGAAAGAAAGAAAATTTGTTTGCCAA 543 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 179 CAAGGAAGAGTTTCAACTTGCTTTGTTCAAGAACAGAAAGAAGGAAAATTTGTTTGCCAA 238 Query 544 TAGGATATTTGATTTATTTGATGTTAAACGAAAAGGCGTAATTGATTTTGGAGACTTTGT 603 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 239 TAGGATATTTGATTTGTTTGATGTTAAACGAAAAGGCGTCATTGATTTTGGAGACTTTGT 298 Query 604 GAGATCACTCAATGTTTTCCATCCTAATGCTTCCCTAGAGGAGAAAACAGACTTTACCTT 663 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 299 GAGATCACTCAATGTTTTCCATCCTAATGCTTCTCTAGAGGAGAAAACAGACTTCACCTT 358 Query 664 TAGGCTTTACGACATGGACTGCACAGGCTTCATTGAGCGCCAAGAGGTGAAGCAGATGTT 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 359 TAGGCTTTACGACATGGACTGCACAGGCTTCATTGAGCGCCAAGAGGTGAAGCAAATGCT 418 Query 724 GATTGCACTTCTCTGCGAATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACT 783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GATTGCACTTCTCTGCGAATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACT 478 Query 784 TGATCAGACATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAATG 843 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 479 GGATCAGACATTTGAGGACGCAGACGTGGATCGGGATGGAAAGATTGATAAGACAGAATG 538 Query 844 GAGCAATTTCGTTATCAAAAACCCATCTTTGCTTAAAATCATGACTCTTCCGTATCTCAG 903 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 GAGCAACTTCGTCATCAAAAACCCATCTTTGCTTAAAATCATGACTCTTCCGTATCTCAG 598 Query 904 GGATATAACGACGACATTTCCGAGTTTCGTATTTAACTCGGAGGTGGACGAGATTGCGAC 963 ||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||| || Sbjct 599 GGATATAACCACGACGTTTCCGAGTTTTGTTTTTAACTCGGAGGTGGACGAAATTGCTAC 658 Query 964 GTGAAAGAGACAAGACAAGCTGGTT 988 ||||| || ||||||||| |||||| Sbjct 659 GTGAA-GAAACAAGACAAACTGGTT 682 > Ahg946460 jgi|Araly1|946460|scaffold_702689.1 Length=683 Score = 699 bits (378), Expect = 0.0 Identities = 572/666 (86%), Gaps = 11/666 (2%) Strand=Plus/Plus Query 316 TCATCCGTAAATGGGTTGTTTCCATTCCACGGCTGCCAGAGAATTTC-CCGATCACGAAA 374 ||||| ||||||||| || ||||| || | ||| || |||||||||| || |||||| Sbjct 11 TCATCTGTAAATGGGCTGCTTCCACTCAAAGGCAGCAAGAGAATTTCGAGGA-CACGAAG 69 Query 375 ACCCTGTGAAGCTTGCTTCTGAGACTGCTTTTAGTGTTAGTGAAGTTGAAGCATTGTATG 434 ||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||| || Sbjct 70 ACCCTGTTAAGCTTGCCTCTGAGACAGCTTTTAGTGTGAGTGAGGTTGAAGCATTGTTTG 129 Query 435 AATTGTTCAAGAGCATAAGCAGCTCGGTTGTTGACGATGGCT-TGATAAACAAGGAAGAG 493 | ||||||||||||||||||| ||||||||||| ||||| | ||||||||||||| ||| Sbjct 130 AGCTGTTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGG-TCTGATAAACAAGGAGGAG 188 Query 494 TTTCAACTTGCTTTGTTCAAGAA-CAGAAAGAAAGAAAATTTGTTTGCCAATAGGATATT 552 ||||||||||| |||||||| || | | |||| || ||| | ||||| ||||||||||| Sbjct 189 TTTCAACTTGCATTGTTCAA-AAGCCGGAAGAGGGAGAATATATTTGCTAATAGGATATT 247 Query 553 TGATTTATTTGATGTTAAACGAAAAGGCGTAATTGATTTTGGAGACTTTGTGAGATCACT 612 |||| | |||||||||||||||||||| || || |||||||| |||||||| |||||||| Sbjct 248 TGATATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTTGGGGACTTTGTAAGATCACT 307 Query 613 CAATGTTTTCCATCCTAATGCTTCCCTAGAGGAGAAAACAGACTTTACCTTTAGGCTTTA 672 |||||||||||| || |||||||| ||||| || |||| ||| ||||| |||||||| || Sbjct 308 CAATGTTTTCCACCCAAATGCTTCTCTAGAAGACAAAATAGATTTTACATTTAGGCTCTA 367 Query 673 CGACATGGACTGCACAGGCTT-CATTGAGCGCCAAGAGGTGAAGCAGATGTTGATTGCAC 731 ||||||||||||||| || || |||||| ||||||||||| |||||||||||||| || | Sbjct 368 CGACATGGACTGCAC-GGGTTACATTGAACGCCAAGAGGTCAAGCAGATGTTGATCGCCC 426 Query 732 TTCTCTGCGAATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACTTGATCAGA 791 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||| Sbjct 427 TTCTCTGCGAATCTGAAATGAAACTGGCTGATGAAACCATAGAGATTATACTTGATAAGA 486 Query 792 CATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAATGGAGCAATT 851 ||||||| || ||||| ||| ||| |||||||||||||||||| ||| ||||| ||| Sbjct 487 CATTTGAAGATGCAGACGTGAATCAAGATGGAAAGATTGATAAGTTAGAGTGGAGTGATT 546 Query 852 TCGTTATCAAAAACCCATCTTTGCTTAAA-ATCATGACTCTTCCGTATCTCAGGGATATA 910 |||| | |||||| ||||| ||||| ||| |||||||||||||| ||||||||||||||| Sbjct 547 TCGTAAACAAAAATCCATCATTGCT-AAAGATCATGACTCTTCCATATCTCAGGGATATA 605 Query 911 ACGACGACATTTCCGAGTTTCGTATTTAACTCGGAGGTGGACGAGATTGCGACGTGAAAG 970 ||||| || ||||||||||| || || || |||||||| || |||||||| || |||| | Sbjct 606 ACGACAACGTTTCCGAGTTTTGTCTTCAATTCGGAGGTCGATGAGATTGCCACATGAA-G 664 Query 971 AGACAA 976 | |||| Sbjct 665 AAACAA 670 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45671254566 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5