BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47100.1
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948205 jgi|Araly1|948205|scaffold_800092.1 1107 0.0
Ahg946460 jgi|Araly1|946460|scaffold_702689.1 699 0.0
> Ahg948205 jgi|Araly1|948205|scaffold_800092.1
Length=682
Score = 1107 bits (599), Expect = 0.0
Identities = 657/685 (96%), Gaps = 3/685 (0%)
Strand=Plus/Plus
Query 304 GTTTTACTCTTGTCATCCGTAAATGGGTTGTTTCCATTCCACGGCTGCCAGAGAATTTCC 363
|||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 GTTTTA--CTTGTCATCTGTAAATGGGTTGTTTCCATTCCACGGCTGCGAGAGAATTTCC 58
Query 364 CGATCACGAAAACCCTGTGAAGCTTGCTTCTGAGACTGCTTTTAGTGTTAGTGAAGTTGA 423
| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 59 TGGTCACGAGAACCCTGTGAAGCTAGCTTCTGAGACTGCTTTTAGTGTTAGTGAAGTTGA 118
Query 424 AGCATTGTATGAATTGTTCAAGAGCATAAGCAGCTCGGTTGTTGACGATGGCTTGATAAA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGCATTGTATGAATTGTTCAAGAGCATAAGCAGCTCGGTTGTTGACGATGGCTTGATAAA 178
Query 484 CAAGGAAGAGTTTCAACTTGCTTTGTTCAAGAACAGAAAGAAAGAAAATTTGTTTGCCAA 543
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 179 CAAGGAAGAGTTTCAACTTGCTTTGTTCAAGAACAGAAAGAAGGAAAATTTGTTTGCCAA 238
Query 544 TAGGATATTTGATTTATTTGATGTTAAACGAAAAGGCGTAATTGATTTTGGAGACTTTGT 603
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 239 TAGGATATTTGATTTGTTTGATGTTAAACGAAAAGGCGTCATTGATTTTGGAGACTTTGT 298
Query 604 GAGATCACTCAATGTTTTCCATCCTAATGCTTCCCTAGAGGAGAAAACAGACTTTACCTT 663
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 299 GAGATCACTCAATGTTTTCCATCCTAATGCTTCTCTAGAGGAGAAAACAGACTTCACCTT 358
Query 664 TAGGCTTTACGACATGGACTGCACAGGCTTCATTGAGCGCCAAGAGGTGAAGCAGATGTT 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 359 TAGGCTTTACGACATGGACTGCACAGGCTTCATTGAGCGCCAAGAGGTGAAGCAAATGCT 418
Query 724 GATTGCACTTCTCTGCGAATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GATTGCACTTCTCTGCGAATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACT 478
Query 784 TGATCAGACATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAATG 843
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 GGATCAGACATTTGAGGACGCAGACGTGGATCGGGATGGAAAGATTGATAAGACAGAATG 538
Query 844 GAGCAATTTCGTTATCAAAAACCCATCTTTGCTTAAAATCATGACTCTTCCGTATCTCAG 903
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAGCAACTTCGTCATCAAAAACCCATCTTTGCTTAAAATCATGACTCTTCCGTATCTCAG 598
Query 904 GGATATAACGACGACATTTCCGAGTTTCGTATTTAACTCGGAGGTGGACGAGATTGCGAC 963
||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 599 GGATATAACCACGACGTTTCCGAGTTTTGTTTTTAACTCGGAGGTGGACGAAATTGCTAC 658
Query 964 GTGAAAGAGACAAGACAAGCTGGTT 988
||||| || ||||||||| ||||||
Sbjct 659 GTGAA-GAAACAAGACAAACTGGTT 682
> Ahg946460 jgi|Araly1|946460|scaffold_702689.1
Length=683
Score = 699 bits (378), Expect = 0.0
Identities = 572/666 (86%), Gaps = 11/666 (2%)
Strand=Plus/Plus
Query 316 TCATCCGTAAATGGGTTGTTTCCATTCCACGGCTGCCAGAGAATTTC-CCGATCACGAAA 374
||||| ||||||||| || ||||| || | ||| || |||||||||| || ||||||
Sbjct 11 TCATCTGTAAATGGGCTGCTTCCACTCAAAGGCAGCAAGAGAATTTCGAGGA-CACGAAG 69
Query 375 ACCCTGTGAAGCTTGCTTCTGAGACTGCTTTTAGTGTTAGTGAAGTTGAAGCATTGTATG 434
||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||| ||
Sbjct 70 ACCCTGTTAAGCTTGCCTCTGAGACAGCTTTTAGTGTGAGTGAGGTTGAAGCATTGTTTG 129
Query 435 AATTGTTCAAGAGCATAAGCAGCTCGGTTGTTGACGATGGCT-TGATAAACAAGGAAGAG 493
| ||||||||||||||||||| ||||||||||| ||||| | ||||||||||||| |||
Sbjct 130 AGCTGTTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGG-TCTGATAAACAAGGAGGAG 188
Query 494 TTTCAACTTGCTTTGTTCAAGAA-CAGAAAGAAAGAAAATTTGTTTGCCAATAGGATATT 552
||||||||||| |||||||| || | | |||| || ||| | ||||| |||||||||||
Sbjct 189 TTTCAACTTGCATTGTTCAA-AAGCCGGAAGAGGGAGAATATATTTGCTAATAGGATATT 247
Query 553 TGATTTATTTGATGTTAAACGAAAAGGCGTAATTGATTTTGGAGACTTTGTGAGATCACT 612
|||| | |||||||||||||||||||| || || |||||||| |||||||| ||||||||
Sbjct 248 TGATATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTTGGGGACTTTGTAAGATCACT 307
Query 613 CAATGTTTTCCATCCTAATGCTTCCCTAGAGGAGAAAACAGACTTTACCTTTAGGCTTTA 672
|||||||||||| || |||||||| ||||| || |||| ||| ||||| |||||||| ||
Sbjct 308 CAATGTTTTCCACCCAAATGCTTCTCTAGAAGACAAAATAGATTTTACATTTAGGCTCTA 367
Query 673 CGACATGGACTGCACAGGCTT-CATTGAGCGCCAAGAGGTGAAGCAGATGTTGATTGCAC 731
||||||||||||||| || || |||||| ||||||||||| |||||||||||||| || |
Sbjct 368 CGACATGGACTGCAC-GGGTTACATTGAACGCCAAGAGGTCAAGCAGATGTTGATCGCCC 426
Query 732 TTCTCTGCGAATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACTTGATCAGA 791
|||||||||||||||||||||||||||||||||| || |||||||| ||||||||| |||
Sbjct 427 TTCTCTGCGAATCTGAAATGAAACTGGCTGATGAAACCATAGAGATTATACTTGATAAGA 486
Query 792 CATTTGAGGACGCAGATGTGGATCGGGATGGAAAGATTGATAAGACAGAATGGAGCAATT 851
||||||| || ||||| ||| ||| |||||||||||||||||| ||| ||||| |||
Sbjct 487 CATTTGAAGATGCAGACGTGAATCAAGATGGAAAGATTGATAAGTTAGAGTGGAGTGATT 546
Query 852 TCGTTATCAAAAACCCATCTTTGCTTAAA-ATCATGACTCTTCCGTATCTCAGGGATATA 910
|||| | |||||| ||||| ||||| ||| |||||||||||||| |||||||||||||||
Sbjct 547 TCGTAAACAAAAATCCATCATTGCT-AAAGATCATGACTCTTCCATATCTCAGGGATATA 605
Query 911 ACGACGACATTTCCGAGTTTCGTATTTAACTCGGAGGTGGACGAGATTGCGACGTGAAAG 970
||||| || ||||||||||| || || || |||||||| || |||||||| || |||| |
Sbjct 606 ACGACAACGTTTCCGAGTTTTGTCTTCAATTCGGAGGTCGATGAGATTGCCACATGAA-G 664
Query 971 AGACAA 976
| ||||
Sbjct 665 AAACAA 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45671254566
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5