BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47110.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948204 jgi|Araly1|948204|scaffold_800091.1 1033 0.0
Ahg493118 jgi|Araly1|493118|fgenesh2_kg.7__2551__AT4G17600.1 560 7e-159
> Ahg948204 jgi|Araly1|948204|scaffold_800091.1
Length=838
Score = 1033 bits (559), Expect = 0.0
Identities = 764/854 (89%), Gaps = 50/854 (6%)
Strand=Plus/Plus
Query 59 gagagagaTCT-TAACaa-aaaaaTGTCTATATCCATGGCGTTATTCTCTCCGCCGATCT 116
||||||||||| | ||| ||||||||| ||||||||||||||||||||||| ||||
Sbjct 1 GAGAGAGATCTCT-TCAAGAAAAATGTCAATATCCATGGCGTTATTCTCTCCACCGA--- 56
Query 117 CTTCCTCACTTCAGAACCCTAATCTCATCCCCAAGATCTCAACCTCTCTTCTCTCCACCA 176
| |||||| ||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 57 -----T-ACTTCAAAACCCTAATCTCATCCCCAAGATCTCATCTTCTCTCCTCTCCACCA 110
Query 177 AGCGTTTCTCTCTAATCTCCGTCCCTAGAGCTTCCTCCGACAATGGTACGACTTC-CC-- 233
||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| ||
Sbjct 111 AGCGTTTCTCTCTCATCTACGTCCCTCGAGCTTCCTCCGACAATGGTACGACTTCACCAA 170
Query 234 C--C-G-T-C-GT---GG-A------G------A--TTCCGAAGCCTGCTT-CTGTGGCT 268
| | | | | || || | | | |||||||||||| | ||||||||
Sbjct 171 CGTCTGCTTCAGTCTCGGCAACCACCGTCGTGGAGATTCCGAAGCCTG-TGGCTGTGGCT 229
Query 269 GTAGAGGAAGTTCCAGTTAAATCTCCAGCCGAAAGCTCCTCCGCTTCTGAAAACGGCGCC 328
|||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 230 GTAGAGGAAGTTCCGGTTAAATCTCC-G--GAAAGCTCCTCCGCTTCTGGAAACGGCGCC 286
Query 329 GTTGGAGGTGAAGCGACTGATTCGAGTACTG---AGACGGTAATCAAATATCA-GAATGC 384
||||||||||||| |||||||| | |||||| ||||||||||||||| | | || |||
Sbjct 287 GTTGGAGGTGAAGAGACTGATTTGGGTACTGCTGAGACGGTAATCAAATTTGAAGA-TGC 345
Query 385 GAAGTGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGCAAAACTGATTG 444
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 346 GAAGTGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGGAAAACAGATTG 405
Query 445 GGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTTGAAGATAACCCGGAAAC 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTTGAAGATAACCCGGAAAC 465
Query 505 AACGAGTAACGACGAGCTTGTTGTCTTCGATACTTCGATTATTCCATGGTGGGCATGGAT 564
|| ||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 466 GACTAGTAACGACGAGCCTGTACTCTTCGATACCTCGATTATTCCATGGTGGGCATGGAT 525
Query 565 GAAGAGATACCATCTACCTGAAGCTGAACTTCTCAATGGTCGTGCTGCGATGATAGGGTT 624
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 526 GAAGAGATACCATCTACCCGAAGCCGAACTTCTCAATGGTCGTGCTGCGATGATAGGGTT 585
Query 625 CTTCATGGCTTACTTTGTTGATAGTCTTACCGGAGTAGGACTTGTTGATCAAATGGGAAA 684
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 586 CTTCATGGCTTACTTTGTTGATAGCCTTACCGGAGTAGGACTTGTTGATCAAATGGGGAA 645
Query 685 TTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCTGGAGTTCTCTTCATCCGTAAGAA 744
|||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||
Sbjct 646 TTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCCGGAGTTCTTTTTATCCGCAAGAA 705
Query 745 TGAAGATTTAGACAAACTTAAGGATCTGTTCGATGAGACTACGTTATATGACAAACAATG 804
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 706 CGAAGATTTAGACAAACTTAAGGATCTGTTTGATGAGACAACGTTATATGACAAACAATG 765
Query 805 GCAAGCTGCATGGAAAGAGCCAGATTCATCAACAGTTTCTTCAAAGAAGTGAACAAGTTC 864
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GCAAGCAGCGTGGAAAGAGCCAGATTCATCAACAGTTTCTTCAAAGAAGTGAACAAGTTT 825
Query 865 TTACAATCTTTCAT 878
||||| ||||||||
Sbjct 826 TTACA-TCTTTCAT 838
> Ahg493118 jgi|Araly1|493118|fgenesh2_kg.7__2551__AT4G17600.1
Length=948
Score = 560 bits (303), Expect = 7e-159
Identities = 445/511 (87%), Gaps = 19/511 (4%)
Strand=Plus/Plus
Query 318 AAAACGGCGCCGTTGGAGGTGAAGCGACTG-ATTCGAGTACTGAGACGGTAATCAAATAT 376
|||| | |||||||| |||||||| || || | | | || |||||||| ||||||| |
Sbjct 268 AAAATGTCGCCGTTGAAGGTGAAGAGA-TGAAAAC--G-ACGGAGACGGTTATCAAAT-T 322
Query 377 -CAGAATGCGAAG-TGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGCA 434
||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 323 CCAGGATGCG-AGATGGATTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGAA 381
Query 435 AAACTGATTGGGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTTGAAGATA 494
|||| |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||| |
Sbjct 382 AAACCGATTGGGATTCTGTAATCGTTGCTGAGGCAAAGAGAAGAAAATGGCTAGAAGAGA 441
Query 495 ACCCGGAAACAACGAGTAACGACGAGCTTGTTG-TCTTCGATACTTCGATTATTCCATGG 553
| || |||||||||||||||||||| | || | | |||||||| |||||||||||||||
Sbjct 442 ATCCAGAAACAACGAGTAACGACGAACCAGT-GCTTTTCGATACATCGATTATTCCATGG 500
Query 554 TGGGCATGGATGAAGAGATACCATCT-ACCTGAAGCTGAACTTCTCAA-TGGTCGTGCTG 611
||||| ||||| ||||||||||| || ||||||||||||||| || || |||||||||||
Sbjct 501 TGGGCTTGGATTAAGAGATACCA-CTTACCTGAAGCTGAACT-CTTAAATGGTCGTGCTG 558
Query 612 CGATGATAGGGTTCTTCATGGCTTACTTTGTTGATAGTCTTACCGGAGTAGGACTTGTTG 671
|||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 559 CGATGATAGGATTCTTTATGGCTTACTTTGTCGATAGTCTTACCGGAGTAGGACTTGTCG 618
Query 672 ATCAAATGGGAAATTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCTGGAGTTCTCT 731
|||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| | |
Sbjct 619 ATCAAATGGGGAATTTCTTCTGCAAGACACTCTTGTTTGTGGCTGTGGCTGGAGTTTTGT 678
Query 732 TCATCCGTAAGAATGAAGAT-TTAGACAAACTTAAGGATCT-GTTCGATGAGACTACGTT 789
| |||||||||||||| ||| || || ||||| ||| | || ||| ||||||||||| ||
Sbjct 679 TTATCCGTAAGAATGAGGATGTT-GATAAACTCAAGAA-CTTGTTTGATGAGACTACATT 736
Query 790 ATATGACAAACAATGGCAAGCTGCATGGAAA 820
|||||| || ||||||||||| || ||||||
Sbjct 737 ATATGATAAGCAATGGCAAGCAGCTTGGAAA 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5