BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47140.1
Length=2072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356279 jgi|Araly1|356279|fgenesh1_pg.C_scaffold_8000066 2213 0.0
Ahg493120 jgi|Araly1|493120|fgenesh2_kg.7__2553__AT4G17570.1 278 1e-73
> Ahg356279 jgi|Araly1|356279|fgenesh1_pg.C_scaffold_8000066
Length=1434
Score = 2213 bits (1198), Expect = 0.0
Identities = 1360/1435 (95%), Gaps = 23/1435 (2%)
Strand=Plus/Plus
Query 474 ATGGGGAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGTACACCTCTATGGAGAAAC 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGGGAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGTACACCTCTATGGCGAAAC 60
Query 534 GGGCCACCAGAGAAGCCGGTGTTGTGCAATGCGTGTGGTTCGAGGTGGAGAACTAAAGGA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGGCCACCAGAGAAGCCGGTGTTGTGCAATGCGTGTGGTTCGAGGTGGAGAACTAAAGGA 120
Query 594 TCATTAGTAAACTACACACCTCTTCATGCTCGTGCTGAAGGTGATGAGACTGAGATTGAG 653
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 121 TCATTAGTAAACTACACACCTCTTCATGCGCGTGCTGAAGGTGATGAGATTGAGATTGAG 180
Query 654 GATCATAGAACTCAAACG-GTGATGATTAAGGGAATGTCTTTGAACAAAAAGATTCCCAA 712
||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATCATAGAGCTCAAA-GAGTGATGATTAAGGGAATGTCTTTGAACAAAAAGATTCCCAA 239
Query 713 GAGGAAACCATATCAAGAAAACTTCACAGTGAAAAGAGCTAACTTGGAATTCCATACCGG 772
||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||
Sbjct 240 GAGGAAACCATATCAAGAAAATTTTACAGTTAAAAGAGCTAACTTGGAATTCCATGCCGG 299
Query 773 TTTCAAGAGGAAGGCTCTGGATGAAGAAGCTAGCAATAGATCGAGTTCAGGATCGGTTGT 832
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTCAAGAGGAAGGTTCTGGATGAAGAAGCTAGCAATAGATCGAGTTCAGGATCGGTTGT 359
Query 833 ATCAAACTCCGAGAGCTGTGCACAATCTAATGCGTGGGACTCGACTTTTCCTTGTAAGAG 892
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 360 ATCAAACTCCGAGAGCTGTGCACAATCTAATGCATGGGACGCGACTTTTCCTTGTAAGAG 419
Query 893 AAGGACATGTGTGGGACGTCCAAAGGCAGCTTCTTCTGTTGAAAAGCTCACAAAGGATCT 952
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGGACATGTGTGGGCCGTCCAAAGGCAGCTTCTTCTGTTGAAAAGCTCACAAAGGATCT 479
Query 953 TTATACTATTCTACAAGAACAGCAATCTTCTTGTCTCTCTGGTACTTCAGAGGAAGATTT 1012
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTATACTATTCTACAAGAACAACAATCTTCTTGTCTCTCTGGTACTTCAGAGGAAGATTT 539
Query 1013 GCTTTTTGAGAATGAAACACCAATGCTGTTAGGACATGGTAGTGTTCTTATGAGAGATCC 1072
||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 540 GCTTTTTGAGAGTGAAACACCAATGTTGTTAGGACATGGGAGTGTTCTTATGAGAGATCC 599
Query 1073 TCACTCAGGTGCTCGAGAAGAGGAATCTGAAGCTAGCTCACTCTTAGTTGAGAGCAGCAA 1132
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCACCCGGGTGCTCGAGAAGAGGAATCTGAAGCTAGCTCACTCTTAGTTGAGAGCAGCAA 659
Query 1133 GTCTTCATCAGTTCATTCTGTTAAATTTGGTGGAAAAGCAATGAAGCAGGAGCAAGTGAA 1192
||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||
Sbjct 660 GTCCTCATCAGTTCATTCTGTGAAATTTGGTGGAAAGGCAATAAAGCAGGAGCAACTGAA 719
Query 1193 GAGGAGCAAATCTCAAGTCTTAGGAAGACATAGTTCACTACTCTGTAGCATAGATTTGAA 1252
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 720 GAGGAGCAAATCTCAAGTCTTAGGACGACATAGTTCACTACTCTGTAGCATAGATTTGAA 779
Query 1253 GGATGTTTTCAACTTTGATGAGTTCATAGAAAATTTCACAGAGGAAGAACAGCAAAAACT 1312
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 780 GGACGTTTTCAACTTTGATGAGTTCATAGAAAAATTCACAGAGGAAGAACAGGAAAAACT 839
Query 1313 GATGAAATTACTTCCTCAAGTTGACTCTGTTGATCGTCCTGATAGCCTCAGAAGCATGTT 1372
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GATGAAACTAGTTCCTCAAGTTGACTCTGTTGATCGTCCTGATAGCCTCAGAAGCATGTT 899
Query 1373 TGAGAGTTCTCAATTCAAAGAGAACTTATCCTTGTTTCAGCAACTTGTGGCAGATGGTGT 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGAGAGTTCTCAATTCAAAGAGAACTTATCCTTGTTTCAGCAACTTGTGGCAGATGGTGT 959
Query 1433 TTTTGAGACAAATTCGTCTTAT------GCA--AAA-CTTGAAGACATTAAGACACTTGC 1483
||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 960 TTTTGAGACAACTTCGTCTTATTCCTCTGCATCAAAACTTGAAGACATTAAGACACTTGC 1019
Query 1484 AAAGCTTGCTTTATCAGATCCTAACAAATCCCATTTGTTGGAAAGCTATTACATGCTCAA 1543
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1020 AAAGCTTGCTTTATCAGATCCTAACAAATCCCATTTGTTGGAAAACTATTACATGCTCAA 1079
Query 1544 G-A---GAAGAGA-G-ATTGAAGACTGTGTTACTACAACATCAAGGGTCTCAAGCTTGAG 1597
| | ||| | | | | |||||||| |||||||||| |||||| |||||||| | ||||
Sbjct 1080 GGAACAGAAAAAAAGGACTGAAGACTCTGTTACTACAGCATCAACGGTCTCAAACCTGAG 1139
Query 1598 TCCATCGAATAATAATAGTCTTGTAACCATTGAAAGACCTTGTGAAAGCTTAAACCAAAA 1657
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 TCCATCAAAGAATAATAGTCTTGTAACTATTGAAAGACCTTGTGAAAGCTTAAACCAAAA 1199
Query 1658 CTTCTCAGAGACAAGAGGTGTGATGAGAAGCCCGAAAGAAGTGATGAAGATTAGATCAAA 1717
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1200 CTTCTCAGAGACAAGAGGTGTGATGAGAAGCCCCAAAGAAGTGATGAAGATTAGATCAAA 1259
Query 1718 GCACACCGAAG--A--GA-ATTT-AGAGAATAGTGTATCTTCCTTTAAACCTGTGAGCTG 1771
||||| |||| | || |||| |||||| ||||| ||||||||||||||| |||||||
Sbjct 1260 GCACATCGAAACCAAAGAGATTTTAGAGAACAGTGTCTCTTCCTTTAAACCTATGAGCTG 1319
Query 1772 TGGTGGACCTCTGGTGTTTAGCTATGAAGATAATGATATTTCTGATCAGGATCTTCTTCT 1831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGGTGGACCTCTGGTGTTTAGCTATGAAGATAATGATATTTCTGATCAGGATCTTCTTCT 1379
Query 1832 TGATGTGCCGTCGAACGGCTCATTCCCTCAAGCAGAGCTTCTAAACATGATATGA 1886
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1380 TGATGTGCCGTCGAACGGCTCATTCCCTCAAGCAGAGCTTCTTCACATGATATGA 1434
> Ahg493120 jgi|Araly1|493120|fgenesh2_kg.7__2553__AT4G17570.1
Length=2418
Score = 278 bits (150), Expect = 1e-73
Identities = 282/343 (82%), Gaps = 19/343 (6%)
Strand=Plus/Plus
Query 1221 CATAGTTCACTACTCTGTAGCATAGATTTGAAGGATGTTTTCAACTTTGATGAGTTCATA 1280
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1315 CATGGTTCACCACTCTGTAGCATAGATTTGAAGGATGTTTTCAACTTTAATGAGTTCATA 1374
Query 1281 GAA-AATTTCACAGAGGAAGAACAGCAA-AAACTGATGAAATTACTTCCTCA-AGTTGAC 1337
||| |||| |||||||||||||||| || |||||||||||||| |||||||| | |||||
Sbjct 1375 GAACAATT-CACAGAGGAAGAACAG-AAGAAACTGATGAAATTGCTTCCTCAGA-TTGAC 1431
Query 1338 TCTGTTGATCGTCCTGATAGCCTCAGAAGCATGTTTGAGAGTTCTCAATTCAAAGAGAAC 1397
|||| ||| | ||||||||||||||||| ||||| || ||| |||| ||||| || |||
Sbjct 1432 TCTGATGACCTTCCTGATAGCCTCAGAATTATGTTCGAAAGTGCTCAGTTCAAGGACAAC 1491
Query 1398 TTATCCTTGTTTCAGCAACTTGTGGCAGATGGTGTTTTTGA-GACAAATTCGTCTTATG- 1455
|| || ||||||||||| || | || |||||||| ||||| | | ||| || | ||
Sbjct 1492 TTCTCTTTGTTTCAGCAGCTCATTGCTGATGGTGTCTTTGATGTCTC-TTCTTCCTCTGG 1550
Query 1456 --CAAAACTTGAAGACATTAAGACACTTGCA-AAGCTTGCTTT-ATCAGATC-CTAACAA 1510
||||||| |||||||| | ||| || | ||||||||||| | ||||| | |||||
Sbjct 1551 GGCAAAACTCGAAGACATCAGGACTTTTA-AGAAGCTTGCTTTGA-CAGATTTC-AACAA 1607
Query 1511 ATCCCATTTGTTGGAAAGCTATTACATGCTCAAGAGAA-GAGA 1552
||| | |||| ||||||||||| || | |||||| ||| ||||
Sbjct 1608 ATCTCGTTTGGTGGAAAGCTATAACCTCCTCAAG-GAACGAGA 1649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77932641270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5