BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47150.1 Length=1088 Score E Sequences producing significant alignments: (Bits) Value Ahg330713 jgi|Araly1|330713|fgenesh1_pm.C_scaffold_8000056 1275 0.0 > Ahg330713 jgi|Araly1|330713|fgenesh1_pm.C_scaffold_8000056 Length=1008 Score = 1275 bits (690), Expect = 0.0 Identities = 900/999 (90%), Gaps = 23/999 (2%) Strand=Plus/Plus Query 109 AGAAGCGATCTTTAGTCTTCGCCATTCGAGACTTTCCACCAGGCTGTGGAACTCACATCG 168 |||||||||||||||||||||||||||||||||| ||||| || ||||||||||| || | Sbjct 14 AGAAGCGATCTTTAGTCTTCGCCATTCGAGACTTCCCACCGGGTTGTGGAACTCATATTG 73 Query 169 ATGTTTCGTCGA-GTTTGAATCATCCAGCTGAGAAGGCCTTCAAGCATCCAAGAACTGGT 227 |||||||| ||| |||| |||| ||||||||| ||| |||||||| ||| |||||||||| Sbjct 74 ATGTTTCGCCGAGGTTT-AATCTTCCAGCTGACAAGTCCTTCAAGAATCAAAGAACTGGT 132 Query 228 GATGTCTCTGGC--G-AGAATCTGAGTTTTGCTGAGGCTAAACCTGAAGGAACTTGTCTC 284 ||||| |||||| | |||||||||||||||| | ||||||| ||||||||||||||| Sbjct 133 GATGTTTCTGGCGAGAAGAATCTGAGTTTTGCAGCTCCTAAACCGGAAGGAACTTGTCTC 192 Query 285 AAACGAGAATCAGCTGATCA--A-G-----ATC-AT-AT-CT-TTGCAGCTCCTGAACAT 332 |||||||||||||||||||| | | ||| || || | ||||||||||||||| | Sbjct 193 AAACGAGAATCAGCTGATCATGAGGACCATATCGATCATATTGTTGCAGCTCCTGAACCT 252 Query 333 AATGCCAAGCGAGAACCAGCTGGTCAGGATCATGTTGTTGCAGCTACTACAGTAGCTTAT 392 || ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 253 AACGCCAAGCGAGAACTAGCTGATCAGGATCATGTTGTTGCAGCTACTACAGTACCTTAT 312 Query 393 GCAACTTCATCTCACAGACAAAAAGTGGAGATCGGAAACTCTGATTGTGATCCTACTCCT 452 ||||||||||||||||||||| || | |||||| |||||||||||||||||||||||||| Sbjct 313 GCAACTTCATCTCACAGACAAGAACTAGAGATCAGAAACTCTGATTGTGATCCTACTCCT 372 Query 453 CGTGAGAAAGTGCTCGAGGTATTGAGTCTTTTCAAACAAGTTTACAACCAGTTGGATCGA 512 ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 373 CGTGAGAAAGTGCTCGAGGTATTGAGTCTTTTCAAACAAGTATACAGCCAGTTGGATCGA 432 Query 513 GATAAAAAAGCAAGACG-TGGTGGAGATTTTTTGGATGCAACAAGCAGAATCGACCTCAA 571 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 433 GATAAAAAAGCAAGACGCTG-TGGAGATTTTTTGGATGCAACAAGCAGAATCGACCTCAA 491 Query 572 AACACTAACTGTGTTGGAGAAGATGGGAAAACAAGTGAACACGGAGAAGAGAATCGGATC 631 |||||||||||| || ||||| ||||| |||||||||||||| ||||||||||||||||| Sbjct 492 AACACTAACTGTCTTAGAGAATATGGGTAAACAAGTGAACACAGAGAAGAGAATCGGATC 551 Query 632 GGTTCCTGGAATC-AACATCGGAGATGTGTTTCAGTACAAAACCGAACTTCGGGTCGTCG 690 ||||| ||| | || | || |||||||||||||||||||| ||||| || |||||| Sbjct 552 AGTTCCCGGAGTAGAAGTTGGG-GATGTGTTTCAGTACAAAACTGAACTCCGTCTCGTCG 610 Query 691 GGCTTCACTCCAAGCCGATGTGCGGTATCGACTACATTAAACTCGGAGATGATAGAATCA 750 |||| || |||||| |||||||||||||||| ||| | ||| |||||||||||||| || Sbjct 611 GGCTCCATTCCAAGACGATGTGCGGTATCGATTACCTGAAAATCGGAGATGATAGACTCG 670 Query 751 CGACAAGCATCGTGGCATCAGAAGGGTATGGATACAATGATACATACAACTCTGGTGTGA 810 |||||||||| || ||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 671 CGACAAGCATAGTAGCATCAGAAGGGTATGGATACAATGATACATTCAAGTCTGGTGTGA 730 Query 811 TGGTTTATACGGGTGAAGGAGGTAACGTGATCAACAAGCAAAAGAAAACTGAAGATCAGA 870 || ||||||| |||||||||||||||||||||| |||| | ||||| ||||||||||||| Sbjct 731 TGATTTATACAGGTGAAGGAGGTAACGTGATCAGCAAGGATAAGAAGACTGAAGATCAGA 790 Query 871 AATTGGTAAAAGGGAATTTGGCATTGGCTACTAGTATGAGGCAGAAGA-GTCAAGTGAGA 929 ||||||| ||||||||||| |||||||||||||||||||||||||||| | ||||||||| Sbjct 791 AATTGGTCAAAGGGAATTTAGCATTGGCTACTAGTATGAGGCAGAAGAAG-CAAGTGAGA 849 Query 930 GTGATTCGTGGAGAAGAGAGATTGGATCGTAAAGGGAAACGATATGTCTACGATGGTTTG 989 |||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| Sbjct 850 GTGATTCGTGGAGAAGAGAGATGGGATCATAAAGGGAAACGATATGTGTACGATGGTTTG 909 Query 990 TATATGGTTGAAGAATATTGGGTTGAGAGAGATGTTAGAGGTAAGAGTGTGTATAAGTTC 1049 ||||||||||||||||||||| ||||||||| |||||||| || | ||||||||||||| Sbjct 910 TATATGGTTGAAGAATATTGGCCTGAGAGAGAGGTTAGAGGAAAAACTGTGTATAAGTTC 969 Query 1050 AAGCTTTGTAGAATTCCTGGTCAACTTCCATTGACTTGA 1088 ||||||||||||||||||||||||| ||||||||||||| Sbjct 970 AAGCTTTGTAGAATTCCTGGTCAACCTCCATTGACTTGA 1008 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40524660771 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5