BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47150.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330713 jgi|Araly1|330713|fgenesh1_pm.C_scaffold_8000056 1275 0.0
> Ahg330713 jgi|Araly1|330713|fgenesh1_pm.C_scaffold_8000056
Length=1008
Score = 1275 bits (690), Expect = 0.0
Identities = 900/999 (90%), Gaps = 23/999 (2%)
Strand=Plus/Plus
Query 109 AGAAGCGATCTTTAGTCTTCGCCATTCGAGACTTTCCACCAGGCTGTGGAACTCACATCG 168
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||| || |
Sbjct 14 AGAAGCGATCTTTAGTCTTCGCCATTCGAGACTTCCCACCGGGTTGTGGAACTCATATTG 73
Query 169 ATGTTTCGTCGA-GTTTGAATCATCCAGCTGAGAAGGCCTTCAAGCATCCAAGAACTGGT 227
|||||||| ||| |||| |||| ||||||||| ||| |||||||| ||| ||||||||||
Sbjct 74 ATGTTTCGCCGAGGTTT-AATCTTCCAGCTGACAAGTCCTTCAAGAATCAAAGAACTGGT 132
Query 228 GATGTCTCTGGC--G-AGAATCTGAGTTTTGCTGAGGCTAAACCTGAAGGAACTTGTCTC 284
||||| |||||| | |||||||||||||||| | ||||||| |||||||||||||||
Sbjct 133 GATGTTTCTGGCGAGAAGAATCTGAGTTTTGCAGCTCCTAAACCGGAAGGAACTTGTCTC 192
Query 285 AAACGAGAATCAGCTGATCA--A-G-----ATC-AT-AT-CT-TTGCAGCTCCTGAACAT 332
|||||||||||||||||||| | | ||| || || | ||||||||||||||| |
Sbjct 193 AAACGAGAATCAGCTGATCATGAGGACCATATCGATCATATTGTTGCAGCTCCTGAACCT 252
Query 333 AATGCCAAGCGAGAACCAGCTGGTCAGGATCATGTTGTTGCAGCTACTACAGTAGCTTAT 392
|| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 253 AACGCCAAGCGAGAACTAGCTGATCAGGATCATGTTGTTGCAGCTACTACAGTACCTTAT 312
Query 393 GCAACTTCATCTCACAGACAAAAAGTGGAGATCGGAAACTCTGATTGTGATCCTACTCCT 452
||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||
Sbjct 313 GCAACTTCATCTCACAGACAAGAACTAGAGATCAGAAACTCTGATTGTGATCCTACTCCT 372
Query 453 CGTGAGAAAGTGCTCGAGGTATTGAGTCTTTTCAAACAAGTTTACAACCAGTTGGATCGA 512
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 373 CGTGAGAAAGTGCTCGAGGTATTGAGTCTTTTCAAACAAGTATACAGCCAGTTGGATCGA 432
Query 513 GATAAAAAAGCAAGACG-TGGTGGAGATTTTTTGGATGCAACAAGCAGAATCGACCTCAA 571
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 433 GATAAAAAAGCAAGACGCTG-TGGAGATTTTTTGGATGCAACAAGCAGAATCGACCTCAA 491
Query 572 AACACTAACTGTGTTGGAGAAGATGGGAAAACAAGTGAACACGGAGAAGAGAATCGGATC 631
|||||||||||| || ||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 492 AACACTAACTGTCTTAGAGAATATGGGTAAACAAGTGAACACAGAGAAGAGAATCGGATC 551
Query 632 GGTTCCTGGAATC-AACATCGGAGATGTGTTTCAGTACAAAACCGAACTTCGGGTCGTCG 690
||||| ||| | || | || |||||||||||||||||||| ||||| || ||||||
Sbjct 552 AGTTCCCGGAGTAGAAGTTGGG-GATGTGTTTCAGTACAAAACTGAACTCCGTCTCGTCG 610
Query 691 GGCTTCACTCCAAGCCGATGTGCGGTATCGACTACATTAAACTCGGAGATGATAGAATCA 750
|||| || |||||| |||||||||||||||| ||| | ||| |||||||||||||| ||
Sbjct 611 GGCTCCATTCCAAGACGATGTGCGGTATCGATTACCTGAAAATCGGAGATGATAGACTCG 670
Query 751 CGACAAGCATCGTGGCATCAGAAGGGTATGGATACAATGATACATACAACTCTGGTGTGA 810
|||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 671 CGACAAGCATAGTAGCATCAGAAGGGTATGGATACAATGATACATTCAAGTCTGGTGTGA 730
Query 811 TGGTTTATACGGGTGAAGGAGGTAACGTGATCAACAAGCAAAAGAAAACTGAAGATCAGA 870
|| ||||||| |||||||||||||||||||||| |||| | ||||| |||||||||||||
Sbjct 731 TGATTTATACAGGTGAAGGAGGTAACGTGATCAGCAAGGATAAGAAGACTGAAGATCAGA 790
Query 871 AATTGGTAAAAGGGAATTTGGCATTGGCTACTAGTATGAGGCAGAAGA-GTCAAGTGAGA 929
||||||| ||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 791 AATTGGTCAAAGGGAATTTAGCATTGGCTACTAGTATGAGGCAGAAGAAG-CAAGTGAGA 849
Query 930 GTGATTCGTGGAGAAGAGAGATTGGATCGTAAAGGGAAACGATATGTCTACGATGGTTTG 989
|||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 850 GTGATTCGTGGAGAAGAGAGATGGGATCATAAAGGGAAACGATATGTGTACGATGGTTTG 909
Query 990 TATATGGTTGAAGAATATTGGGTTGAGAGAGATGTTAGAGGTAAGAGTGTGTATAAGTTC 1049
||||||||||||||||||||| ||||||||| |||||||| || | |||||||||||||
Sbjct 910 TATATGGTTGAAGAATATTGGCCTGAGAGAGAGGTTAGAGGAAAAACTGTGTATAAGTTC 969
Query 1050 AAGCTTTGTAGAATTCCTGGTCAACTTCCATTGACTTGA 1088
||||||||||||||||||||||||| |||||||||||||
Sbjct 970 AAGCTTTGTAGAATTCCTGGTCAACCTCCATTGACTTGA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5