BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47160.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494263 jgi|Araly1|494263|fgenesh2_kg.8__79__AT5G47160.1 957 0.0
> Ahg494263 jgi|Araly1|494263|fgenesh2_kg.8__79__AT5G47160.1
Length=998
Score = 957 bits (518), Expect = 0.0
Identities = 635/692 (92%), Gaps = 5/692 (1%)
Strand=Plus/Plus
Query 560 CTGGAGTCCTCTCGGTTATACAACGAAACCGGCTTTCGAAAGATCTTACCCCACGCCAGA 619
||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||| |||
Sbjct 308 CTGGAGTTCTCTCGGATATACAACGAAACCGGCTTTCTAAAGATCTTAGCCCACGAGAGA 367
Query 620 AGGTTCAAGAAGTGTTGCGTATTTTCACACTTGTGTTTGATGAGCTAGATCGTAACAAGG 679
| |||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 368 AAGTTCAAGAGGTGTTGCGTGTTTTCAAACTTGTGTTTGATGAGCTAGATCGTAACAAGG 427
Query 680 CAGCAAGAAGAGGTGGATCAGAGACTGCCAAGAGCAGGATAGATTACCAAACTTGGACTA 739
||||| | |||||| |||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 428 CAGCACGGCGAGGTGAATCAGAGACTGCCAAGAGTAGGATAGATTACCAAACTCGGAATA 487
Query 740 TTCTGAGGGAAATGGGGATGCAAGTTAACTCTCAAAAGAGGATTGGATCAGTCCCCGGGA 799
||||||||||||||||||||||||| |||| ||| |||||||||||| |||||||||| |
Sbjct 488 TTCTGAGGGAAATGGGGATGCAAGTGAACTGTCATAAGAGGATTGGACCAGTCCCCGGAA 547
Query 800 TCAAGGTTGGAGATAAAATTCAGTTCAAAGCAGCACTCAGTGTAATCGGTCTTCATTTTG 859
|| ||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 548 TCGAGGTTGGAGATGAAATTCAGTTCAAAGCAGCACTCAATGTAATCGGTCTTCACTTTG 607
Query 860 GCATCATGAGTGGGATTGACTACATGTATAAAGGAAACAAGGAAGTAGCTACAAGCATTG 919
||||||| ||||||| || |||||| | ||||||||||||||||||||||| |||||||
Sbjct 608 ACATCATGGGTGGGATAGATTACATGAAGAAAGGAAACAAGGAAGTAGCTACGAGCATTG 667
Query 920 TTTCATCAGAAGGTAATGATTACGGGGATAGATTCATCAACGATGTGATGATCTATTGTG 979
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 668 TTTCATCTGAAGGTAATGATTACGGCGATAGATTCATCAACGATGTGATGATCTATTGTG 727
Query 980 GTCAAGGAGGTAATATGAGGAGCAAGGATCATAAAGCAATCAAAGATCAGAAGCTTGTTG 1039
|||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 728 GTCAAGGAGGTAATGTGAAGAGCAAGGATCAAAAAGCAATCAAAGATCAGAAGCTTGTTG 787
Query 1040 GTGGAAATTTGGCTTTAGCTAATAGCATTAAGGAAAAGACTCCGGTGCGAGTGATCCGTG 1099
| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 788 GAGGCAATTTGGCTTTAGCTAATAGCATTAAGGAAAAGACTCCGGTACGAGTGATCCGCG 847
Query 1100 GCGAAAG-ACGATTGGACAACAGAGGAAAGGATTATGTGTATGATGGTTTATACAGGGTG 1158
||||||| | |||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 848 GCGAAAGGA-GATTGGACCATAGAGGAAAGGATTATGTGTATGATGGTTTATACATGGTG 906
Query 1159 GAGAAGTATTGGGAAGAGAGGGGACCTCAAGGTAACATTTTGTTCAAGTTTAAGCTTAGA 1218
||||||||| || ||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct 907 GAGAAGTATAGGAAAGAGAGAGGCCCTCAAGGTAACATTTTGTTCAAGTTTGAGCTTAGA 966
Query 1219 AGAA---CTTGTCAACCTTATGTGGACTTTTG 1247
|||| || ||||||||||||| ||||||||
Sbjct 967 AGAAAAGCTGGTCAACCTTATGTTGACTTTTG 998
Score = 399 bits (216), Expect = 2e-110
Identities = 281/311 (90%), Gaps = 9/311 (3%)
Strand=Plus/Plus
Query 199 GAATCGTTTGATTCGATAATGAAGAAAGCTGGCTTTAATGTAGC---TAATGGTAATCTT 255
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||
Sbjct 1 GAATCGTTTGATTCGATTATGAAGAAAGCTGGCTTTAATGTAGCAGGTAATGGTAATGTT 60
Query 256 GGGAATGGAAAGTTTCCTCCATCTAAGAGGAATGTTCCTTTACCTTGTGAAGGTAAAGTG 315
||||||| ||| ||||||||||||| |||||| |||||||||| ||||||| ||||||||
Sbjct 61 GGGAATGAAAAATTTCCTCCATCTAGGAGGAAAGTTCCTTTACTTTGTGAAAGTAAAGTG 120
Query 316 CAACCTCTTAGCGTGGAGGAAGGTATTAAACTAATGGCTTATGAAAGCCAAAGAAGACGT 375
||||||| || ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 121 AAACCTCTAAGTGTGGAGGAAGGTATTAAACTAATGGGTTCTGAAAGCCAAAGAAGACGT 180
Query 376 TGTTTTGGTAAGCCTTTGGTATCAACCAAAGTTGTGCAGAAACATAGATACTCACCTGCG 435
||||||||||||||||||||| |||||| ||||||||||| ||||| |||||| |||
Sbjct 181 CGTTTTGGTAAGCCTTTGGTAT---CCAAAGCTGTGCAGAAACGTAGATGCTCACCGGCG 237
Query 436 AAGAAGAAGTTGAGTAATGCAACTGCGTTAAGAGTAAGACACTCACCG---ATGAAGAAG 492
||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 238 AAGAAGAAGTTGAGTAATGCAACTGCGTTAAGAGTAAGATACTCACCGGGGAAGAAGAAG 297
Query 493 TTGAGTAATGC 503
|||||| ||||
Sbjct 298 TTGAGTTATGC 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5