BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47170.1
Length=453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494262 jgi|Araly1|494262|fgenesh2_kg.8__78__AT1G01130.1 464 2e-130
Ahg311321 jgi|Araly1|311321|fgenesh1_pm.C_scaffold_1000101 291 4e-78
> Ahg494262 jgi|Araly1|494262|fgenesh2_kg.8__78__AT1G01130.1
Length=401
Score = 464 bits (251), Expect = 2e-130
Identities = 356/403 (88%), Gaps = 22/403 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAAACGTTCAGATACAGAGAGTTCAGAGATTTTAGAAGATTGGCATTTATCTCCT 60
|||||||||||||||||||||||||||||||||||||| | |||||| |||| ||||||
Sbjct 1 ATGGAGAAACGTTCAGATACAGAGAGTTCAGAGATTTTGGGCGATTGGGATTTGTCTCCT 60
Query 61 -C-CC-GTGAATCCGGAAGAAGGAATCGTAATGGTTTCTGTTCCCACTTCACCAGAGTCT 117
| || ||||||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 61 CCTCCGGTGAATCCGGAAGAACGAATCGTATTGGTTTCTGTTCCCACTTCACCAGAATCT 120
Query 118 GACGATGCGAGATTGAATCCACCAAAAGAGATTGAAACTAGGGTTTCGGAC-AAGAAATT 176
|| |||||||||| ||||| ||| ||||||||||||||||||||||| ||| |||||| |
Sbjct 121 GAAGATGCGAGATCGAATCAACCGAAAGAGATTGAAACTAGGGTTTCAGACAAAGAAA-T 179
Query 177 AGGTTCCACATCAACAGTCGCCGGTGAAGCA---GCAGCGAGGAGAGTGTTGCCGCCGTG 233
|| ||| |||||||| ||||| || ||||| || ||||||||||| |||||||||||
Sbjct 180 AGCTTCGACATCAACTGTCGCTGGAAAAGCAGCGGCGGCGAGGAGAGTATTGCCGCCGTG 239
Query 234 GATGGAGCCGTCGTACGAATGGGGTGGTGGGAAATGgaaagaagatggaagaaagaagaa 293
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GATGGAGCCGTCATATGAATGGGGTGGTGGGAAATGGAAAGAAGATGGAAGAAAGAAGAA 299
Query 294 gaaagagaaagagaaaga-a--gaga---------TTATACCTTTTAAAGAAATCATTGA 341
|||||||||||||||||| | |||| |||| ||||||||||||||||||||
Sbjct 300 GAAAGAGAAAGAGAAAGAGAAAGAGAAAGAAGAGATTATTCCTTTTAAAGAAATCATTGA 359
Query 342 AGCTCTGCTTCGAAACTCCGGTGACAAGGTT-AAGGAAGACAA 383
|||||||||||| |||||||||||||||||| ||| |||||||
Sbjct 360 AGCTCTGCTTCGGAACTCCGGTGACAAGGTTGAAG-AAGACAA 401
> Ahg311321 jgi|Araly1|311321|fgenesh1_pm.C_scaffold_1000101
Length=663
Score = 291 bits (157), Expect = 4e-78
Identities = 333/410 (81%), Gaps = 44/410 (11%)
Strand=Plus/Plus
Query 1 ATGGAGAAACGTTCAGATACAGAGAGTTC---AGAGATTTTAGAAGATTGGCATTTATCT 57
||||||||||||||||||||||||||||| ||||||||| | |||||| ||||| ||
Sbjct 1 ATGGAGAAACGTTCAGATACAGAGAGTTCAGAAGAGATTTTGGGTGATTGGGATTTAACT 60
Query 58 CCTCCCGTGAATCCGGAAGAAGGAATCGTAATGGTTTCTGTTCCCACTTCACCAGAGTCT 117
||||| ||| ||||||||||| || ||||||||||||||||||| || || | | |||
Sbjct 61 CCTCCGGTGGATCCGGAAGAAAGAGTCGTAATGGTTTCTGTTCC-AC--CAG-A-A-TCT 114
Query 118 GACGATGCGAGATTGAATCCACCAAAAGAGATTGAAACTAGGGTTTCGGACAAGAAATTA 177
|| | ||||||| | ||| ||| |||||||| |||||||||||||| |||||| || |
Sbjct 115 GATTACGCGAGATCGGATCAACCGAAAGAGATCGAAACTAGGGTTTCAGACAAGGAA--A 172
Query 178 GGTTCCACATCAACAGTCGCCGGTGAAGCAGCAGCGAGGAGAGTGTTGCCGCCGTGGATG 237
| | | | | |||||||| ||| || | || ||||||||||||||||||||||||
Sbjct 173 G-----A-A--A-C-GTCGCCGGAGAATCATCGGCAAGGAGAGTGTTGCCGCCGTGGATG 222
Query 238 GAGCCGTCGTACGAATGGGGTGGTGGGAAATGgaaagaagatggaagaaagaagaagaa- 296
|||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 223 GAGCCGTCATATGAATGGGGTGGTGGAAAATGGAAAGAAGACGGAAGAAAGAAGAAGAAG 282
Query 297 a--ga----ga-aa-gagaaaga-a----ga--ga-----TTATACCTTTTAAAGAAATC 336
| || || || |||||||| | || || |||| ||||| ||||||||
Sbjct 283 AAAGATAAAGAGAAAGAGAAAGAGAAAAAGAAAGAAGAGATTATTCCTTTCAAAGAAATT 342
Query 337 ATTGAAGCTCTGCTTCGAAACTCCGGTGACAAGGTT-AAGGAAGACAAGG 385
||||||||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct 343 ATTGAAGCTCTGCTTCGAAACTCCGGTGATAAGGTTCAAG-AAGACAAGG 391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16368747681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5