BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47180.1
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494260 jgi|Araly1|494260|fgenesh2_kg.8__76__AT5G47180.2 1500 0.0
Ahg915326 jgi|Araly1|915326|Al_scaffold_0008_77 65.8 6e-10
> Ahg494260 jgi|Araly1|494260|fgenesh2_kg.8__76__AT5G47180.2
Length=1200
Score = 1500 bits (812), Expect = 0.0
Identities = 885/919 (96%), Gaps = 9/919 (1%)
Strand=Plus/Plus
Query 146 TTTAAGCAAACaaaaaaaaaaGATGACCGGCGTTGGCGAGAATCAGCTTATCTCCATTCA 205
||| ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 287 TTTGAGC-AA-AAAAAAAAAAGATGACTGGCGTTGGCGAGAATCAGCTTATCTCCATTCA 344
Query 206 ACCTGATGAACTCAAATTTCTCTTTGAACTTGAGAAGCAAAGCTACTGTGATCTTAAAGT 265
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 345 ACCTGATGAACTCAAATTTCTCTTTGAACTCGAGAAACAAAGCTACTGTGATCTTAAAGT 404
Query 266 TGCCAATAAAACAGAGAACTATGTTGCTTTCAAGGTGAAAACAACATCTCCAAAGAAGTA 325
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TGCCAATAAAACAGAGCACTATGTTGCTTTCAAGGTGAAAACAACATCTCCAAAGAAGTA 464
Query 326 TTTTGTAAGACCTAACACTGGTGTCATTCAGCCATGGGACTCTTGCATCATTAGAGTTAC 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TTTTGTAAGACCTAACACTGGTGTCATTCAGCCATGGGACTCTTGCATCATTAGAGTTAC 524
Query 386 TCTACAAGCGCAACGAGAGTATCCTCCAGATATGCAGTGCAAAGACAAATTTCTCCTGCA 445
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 525 TCTTCAAGCGCAACGGGAGTATCCTCCAGATATGCAGTGCAAAGACAAATTTCTTCTGCA 584
Query 446 AAGTACCATTGTACCTCCACACACTGATGTGGATGAACTTCCTCAAGACACTTTCACCAA 505
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 585 AAGTACCATTGTACCTCCACACACTGATGTGGATGAACTTCCACAAGACACTTTCACCAA 644
Query 506 GGACAGTGGAAAGACATTAACAGAATGTAAGCTCAAAGTCTCTTATATTACCCCGTCTAC 565
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 645 GGACAGTGGAAAGACATTAACAGAATGTAAGCTCAAAGTCTCTTATATTTCCCCGTCTAC 704
Query 566 AACCCAAAGATCCTCTGAATCCGGAGCAACAAATGGTGATGGACAAAGCTCGGAAACCAT 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AACCCAAAGATCCTCTGAATCCGGAGCAACAAATGGTGATGGACAAAGCTCGGAAACCAT 764
Query 626 CTCTACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGCCGTTAAGCAAACACAACAGCT 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 CTCTACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGCCGTTAAGCAAACACAACAGCT 824
Query 686 GCAACATGAATTGGAAACGGTAAGGAGGCGGAGAAACCAGAGGAACAGCGGAAATGGGCT 745
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 825 GCAACATGAATTGGAAACGGTGAGGAGGCGGAGAAACCAGAGGAACAGCGGAAATGGGCT 884
Query 746 ATCCTTGAAGTTGGCAGCTATGGTTGGACTCATCGGACTCATCATCGGTTTCATCCTAAA 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ATCCTTGAAGTTGGCAGCTATGGTTGGACTCATCGGACTCATCATCGGTTTCATCCTAAA 944
Query 806 ACTTACCTTAGCTTCTCCCACATAACAACTCTTGAGCTTCAACACATCGCCTATCATCTC 865
||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct 945 ACTCACCTTAGCTTCTCCCACATAACAACTCTTGAGCTTCTCCGCATCGCCTACCATCTC 1004
Query 866 AATATATGTAACAGCCGAATCAAAACAGATTCACATAT-TTT-CGGGTATTTTAAATCTT 923
| |||||||||| || |||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 1005 AGTATATGTAACTGCGGAATCAAAACAGATTCACATATATTTTCGGGTATTTTAA-TCTT 1063
Query 924 CTAAATTTGGG-TTATTTATATCCCTCTCTTTCTTTCTCCT-AATGTTCCACACGTTTCT 981
||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1064 CTAAATTTGGGCTTATTTCTATCCCTCTCTTTCTTTCTCCTTAATGTTCTACACGTTTCT 1123
Query 982 TCCATCAAATTTTCTTCtttttttCAGTTATAAATTATGTACATTTTTGACCCAAGAGAC 1041
|||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||
Sbjct 1124 TCCATCAAATTTTCTTCTTTTT--CAGTTATATTTTATGTACATTTTTGACCCAACAGAC 1181
Query 1042 CCTTTCATCATTGGTTTTA 1060
|||||||||||||| ||||
Sbjct 1182 CCTTTCATCATTGGATTTA 1200
> Ahg915326 jgi|Araly1|915326|Al_scaffold_0008_77
Length=567
Score = 65.8 bits (35), Expect = 6e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 595 CAAATGGTGATGGACAAAGCTCGGAAACCATCTCT 629
|||||||||||||||||||||||||||||||||||
Sbjct 529 CAAATGGTGATGGACAAAGCTCGGAAACCATCTCT 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39914694099
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5