BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47190.1
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494259 jgi|Araly1|494259|fgenesh2_kg.8__75__AT5G47190.1 1304 0.0
Ahg946470 jgi|Araly1|946470|scaffold_702699.1 577 6e-164
> Ahg494259 jgi|Araly1|494259|fgenesh2_kg.8__75__AT5G47190.1
Length=893
Score = 1304 bits (706), Expect = 0.0
Identities = 851/916 (93%), Gaps = 29/916 (3%)
Strand=Plus/Plus
Query 9 TCTTTACTCTGGTTTCGAGT-T-TGGGTTGTGCAAACATGGCGACGAGCTCTCATCTTCT 66
|||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct 1 TCTTTACTCTGGTTTCGAGTGTAGGGGTAGTGCAAACATGGCGACGAGCTCTCATCTTCT 60
Query 67 TCCTCAGGCATTGCATATGATACCGAGAACCCCTTCTTTCTCGTCGAAGAATTTAGGGGT 126
||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||
Sbjct 61 TCCTCAGACATTGCATATGATGCCGAGAATCCCTACTTTCTCGTCGAAGAATTTAGGGGT 120
Query 127 TTCTTCAATTCTACCACGAGCATCATCAGTGAACTCAAGACTATCAGTTTCTAGGGTTTT 186
|||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 121 TTCTTCAATTCTACCACGAGCATCATCAATCAACTCAAGATTATCAGTTTCTA------- 173
Query 187 TCTCAATCATTCGAGCTCCAATTTTGGTTTCGCCATCGATTCCAAGAAGAGAAAAGAGTT 246
| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 174 --TGAATCATTCTAGCTCCAATTTTGGTTTCGCCATCGATTCCAAGAAGAGAAGAGAGTT 231
Query 247 TATCGCTAAAGCTGAAGAGAGTACTGAAGGTGAAACTGAGGCTGTTGTGGAGAATGCTGT 306
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 232 GATCGCTAAAGCTGAAGAGAGTACTGAAGGTGAAACTGAGGCAGTTGTGGAGAATGTTGT 291
Query 307 TGAAACTGAAGCGGAAGGAGAAGGAGAAGCCACTGTTGCGGCGGAGGAAGCTAAACCTCC 366
||||||| | | || || ||||| |||| |||| ||||||||||||| ||||
Sbjct 292 TGAAACT------G-A--AG--GG-GAAGCTGCTGTGGCGGAGGAGGAAGCTAAAACTCC 339
Query 367 GTGGAAGACGAGAGTCAAGCTCGGAGATATCATGGGGCTACTGAACAAGAAAGCTATTGA 426
| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 340 GAGGAAGGCGAGAGTCAAGCTCGGAGATATCATGGGAATATTGAACAAGAAAGCTATTGA 399
Query 427 GGTTGCAGAGACTGTAAGACCGGTTCCTGGACTTAGGACTGGGGATATTGTAGAAATCAA 486
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 400 GGTTGCAGAGAAAGTAAGACCGGTTCCTGGACTTAGGACAGGGGATATTGTAGAAATCAA 459
Query 487 ACTGGAAGTTCCTGAGAACAAACGTAGGCTATCTATCTACAAAGGTATTGTGATGTCTAG 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 GCTGGAAGTTCCTGAGAACAAACGTAGGCTATCTATCTACAAAGGTATTGTGATGTCTAG 519
Query 547 ACAAAATGCAGGCATCCACACTACTATCCGTATCCGGAGGATTATTGCAGGCATTGGTGT 606
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 520 ACAAAATGCAGGCATCCACACTACTATTCGTATCCGGAGGATTATTGCAGGCATTGGTGT 579
Query 607 TGAAATCGTCTTTCCCATATACTCTCCCAACATAAAGGAGATAAAAGTGGTAAGTCACAG 666
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TGAAATCGTCTTTCCTATATACTCTCCCAACATAAAGGAGATAAAAGTGGTAAGTCACAG 639
Query 667 GAAAGTGAGAAGAGCAAGACTTTACTATCTGAGGGACAAACTTCCTCGTCTCTCAACTTT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GAAAGTGAGAAGAGCAAGACTTTACTATCTGAGGGACAAACTTCCTCGTCTCTCAACTTT 699
Query 727 TAAATGATCACCAAA-CCCAACACCAGTCTTGTCTTGTGTTGT--C-TTCAATCTCCAAA 782
||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||
Sbjct 700 TAAATGATCACCAAAACCCAACACCAGTCTTGTCTTGTGTTGTTACCTTCAATCTCCAAA 759
Query 783 GGTAGCTAGCTACTCTCttttctcttgtaataattgtttgtttgtttcgtcttttggatt 842
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 760 GGTAG-TAGCTACTCTCTTT-CTCTTGTAATAATTGTTTGTTTGTTTTGTCTTTTGGATT 817
Query 843 tcatttcttttcatgtaatttACAGTAACAGTAATTTAAGAAAAGTAAATCAATGTTGAT 902
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 818 TCATTTCTTTTCATGTAATTTACAGTAACAGTGCTCTAAGAAAAGTAAATCAATGTTGAT 877
Query 903 TGTTTTGATCTTGAGT 918
| ||||||||||||||
Sbjct 878 TATTTTGATCTTGAGT 893
> Ahg946470 jgi|Araly1|946470|scaffold_702699.1
Length=718
Score = 577 bits (312), Expect = 6e-164
Identities = 580/704 (82%), Gaps = 40/704 (6%)
Strand=Plus/Plus
Query 44 ATGGCGACGAGCTCTCATCTTCTTCCTCAGGCATTGCATATGATACCGAGAACCCCTTCT 103
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 21 ATGGCGACGAGCTTTCATCGTCTTCCTCAGGCATTGCATATGATACCGAGAAACCCTTCT 80
Query 104 TTCTCGTCGAAGAATTTAGGGGTTTCTTCAATTCTACCACGAGCATCATCAGTGAACTCA 163
|| ||||||||||||||| ||||||| ||||| || | ||| |||| ||||| ||
Sbjct 81 CAATCATCGAAGAATTTAGGGTTTTCTTCGTTTCTATCATGCGCACCATCGGTGAATTCT 140
Query 164 AGACTATCAGTTTCTAGGGTTTTTCTCAATCATT-CGAGCTCCAATTTTGGTTTCGCCA- 221
| |||||||||||||| | | ||| ||||||| || |||| || ||||| ||| ||
Sbjct 141 CGTGTATCAGTTTCTAGGCTCTCTCTGAATCATTCCG-GCTCGAAATTTGGGTTC-TCAC 198
Query 222 TCGATTCCAAGAAGAGAAAAGAGTTTATCGCTAAAGCTGAAG-A-G-AGTACTGAAGGTG 278
||||| | | | |||||| |||||| ||| || ||| |||| | | | ||||||| ||
Sbjct 199 TCGATACTAGGGTGAGAAATGAGTTTGTCGTTAGAGCAGAAGAAGGTAACACTGAAGCTG 258
Query 279 AAACT---GAGGCTGTTG-TGGAGAATGCTGTTGAAACTGAAGCGGAAGGAGAA-GGAGA 333
|| || |||||||||| | || ||| | | || | | | ||||||| || | |||
Sbjct 259 AATCTGAAGAGGCTGTTGCT-GA-AAT-C-GCTG--A-T--A-CGGAAGG-CAATGTAGA 307
Query 334 AGCCACTGTTGCGGCGGAGGAAGCTAAACCTCCGTGGAAGA-CGA-GAGTCAAGCTCGGA 391
|| | ||| || ||||||||||||| | ||| | ||| || |||||||||||
Sbjct 308 AG--A-AGTT-----GG-TGAAGCTAAACCTCAG-AGAAAACCGAGGA-TCAAGCTCGGA 356
Query 392 GATATCATGGGGCTACTGAA-CAAGAAAGCTATTGAGGTTGCAGAGACTGTAAGACCGGT 450
||| |||||||| ||||||| | ||| ||| ||||||||| |||||| |||||||| ||
Sbjct 357 GATGTCATGGGGATACTGAATC-AGAGAGCAATTGAGGTTTCAGAGAAAGTAAGACCTGT 415
Query 451 TCCTGGACTTAGGACTGGGGATATTGTAGAAATCAAACTGGAAGTTCCTGAGAACAAACG 510
||| | | | ||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 TCCAGAAATCAGGACAGGAGATATTGTAGAAATCAAATTGGAAGTTCCTGAGAACAAACG 475
Query 511 TAGGCTATCTATCTACAAAGGTATTGTGATGTCTAGACAAAATGCAGGCATCCACACTAC 570
||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||
Sbjct 476 TAGGCTATCTATCTACAAAGGCATAGTGATGTCGAGACAAAATGCAGGCATACACACTAC 535
Query 571 TATCCGTATCCGGAGGATTATTGCAGGCATTGGTGTTGAAATCGTCTTTCCCATATACTC 630
|| ||||| ||||| |||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 536 CATTCGTATTCGGAGAATTATTGCGGGTATTGGTGTTGAAATCGTGTTTCCCATATACTC 595
Query 631 TCCCAACAT-AAAGGAGATAAAAGTGGTAAGTCACAGGAAAGTGAGAAGAGCAAGACTTT 689
||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 596 TCCCAACATCAAAG-AGATAAAAGTGGTGAGTCACAGAAAAGTGAGAAGAGCAAGGCTTT 654
Query 690 ACTATCTGAGGGACAAACTTCCTCGTCTCTCAACTTTTAAATGA 733
|||||||||| ||||| |||||||||||||| ||||| || |||
Sbjct 655 ACTATCTGAGAGACAAGCTTCCTCGTCTCTCCACTTTCAAGTGA 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5