BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47200.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494258 jgi|Araly1|494258|fgenesh2_kg.8__74__AT5G47200.1 1434 0.0
Ahg946473 jgi|Araly1|946473|scaffold_702702.1 797 0.0
Ahg478519 jgi|Araly1|478519|fgenesh2_kg.3__1220__AT3G11730.1 272 3e-72
> Ahg494258 jgi|Araly1|494258|fgenesh2_kg.8__74__AT5G47200.1
Length=887
Score = 1434 bits (776), Expect = 0.0
Identities = 852/888 (96%), Gaps = 7/888 (1%)
Strand=Plus/Plus
Query 30 aaaaGAACATTCACGTCTCTCTCG---tttttttGGCCGACGACGATCGCTGAATTGACT 86
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |
Sbjct 1 AAAAGAACATTCACGTCTCTCTCGTTTTTTTTTTGCCCGACGACGATCGCTGAATTTATT 60
Query 87 GCCGGAGATTCCTTTAATCGTCAGATTCTCGTTGAGGGATAATGAATCCTGAATATGACT 146
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 61 GCCGGAGATTCCTTTAATCGCCAGATTCTCGCCGAGGGATAATGAATCCTGAATATGACT 120
Query 147 ATCTGTTCAAGCTTCTGCTTATTGGTGATTCTGGTGTTGGAAAATCATGCTTGCTTCTAA 206
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 121 ATCTGTTCAAGCTTCTGCTTATCGGTGATTCTGGTGTTGGAAAATCATGCCTGCTTCTAA 180
Query 207 GATTTGCTGATGATTCTTACCTGGATAGCTACATAAGCACCATTGGTGTTGACTTTAAAA 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATTTGCTGATGATTCTTACCTGGATAGCTACATAAGCACCATTGGTGTTGACTTTAAAA 240
Query 267 TTCGCACAGTTGAGCAGGACGGAAAGACCATCAAACTCCAGATCTGGGACACAGCAGGCC 326
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCGCACAGTCGAACAGGACGGAAAGACCATCAAACTCCAGATCTGGGACACAGCAGGCC 300
Query 327 AAGAACGTTTCAGGACAATCACTAGCAGCTACTACAGAGGAGCTCATGGGATCATTGTCA 386
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 AAGAACGTTTCAGGACAATCACTAGCAGCTACTACAGAGGAGCTCATGGAATCATTGTCA 360
Query 387 CTTATGATGTCACAGACCTAGAGAGCTTCAACAACGTCAAACAATGGCTGAATGAAATTG 446
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 CTTATGATGTCACTGACCTAGAGAGCTTCAACAACGTCAAACAATGGCTGAATGAAATCG 420
Query 447 ACCGTTACGCTAGCGAAAATGTGAACAAGCTACTGGTTGGGAACAAGAACGATCTCACTT 506
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 ACCGTTACGCTAGCGAAAATGTGAACAAGCTACTGGTTGGAAACAAGAACGATCTCACTT 480
Query 507 CACAGAAAGTTGTATCCACTGAGACAGCTAAGGCTTTTGCAGATGAACTTGGGATCCCAT 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CACAGAAAGTTGTATCCACTGAGACAGCTAAGGCTTTTGCAGATGAACTTGGGATCCCAT 540
Query 567 TCTTGGAAACAAGTGCTAAAAATGCAACCAATGTGGAAGAAGCTTTCATGGCTATGACTG 626
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTTGGAAACAAGTGCCAAAAATGCAACCAATGTGGAAGAAGCTTTCATGGCTATGACTG 600
Query 627 CTGCAATTAAGACAAGAATGGCTAGCCAACCAGCTGGAGGTGCCAAGCCACCAACGGTCC 686
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 CTGCAATTAAGACAAGAATGGCTAGCCAGCCAGCTGGAGGTGCCAAGCCACCAACGGTCC 660
Query 687 AGATCCGTGGACAGCCAGTGAACCAGCAATCAGGCTGTTGTTCTTCTTGATTCAATTAGT 746
|||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 661 AGATTCGTGGACAGCCAGTGAACCAGCAATCAGGCTGTTGCTCTTCTTGATTCGATTAGT 720
Query 747 CACCACTCCTCTTTCGATCATCACACCATTATGATCATTTGTTTGCATTGCATGTTAGAC 806
||||| | ||||||||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct 721 CACCAATTCTCTTTCGATCGTCACACCATTATAATCATTTGTTTGCATTGCATGTAAGAC 780
Query 807 TTCTCCAAATTAACAACtctttggat-ccttttgcttgtttttcatttgctt-tcttttg 864
|||||||||||||||||||||||||| || ||||||||||||||||||| || |||||||
Sbjct 781 TTCTCCAAATTAACAACTCTTTGGATACCCTTTGCTTGTTTTTCATTTG-TTGTCTTTTG 839
Query 865 atccgattcttttctGATGTACGTT-GAAGTTTGAAACCCATAACTTC 911
|||| ||||||||||||||||| || |||||||||||| |||||||||
Sbjct 840 ATCCAATTCTTTTCTGATGTACTTTTGAAGTTTGAAACGCATAACTTC 887
> Ahg946473 jgi|Araly1|946473|scaffold_702702.1
Length=650
Score = 797 bits (431), Expect = 0.0
Identities = 552/612 (90%), Gaps = 2/612 (0%)
Strand=Plus/Plus
Query 128 ATGAATCCTGAATATGACTATCTGTTCAAGCTTCTGCTTATTGGTGATTCTGGTGTTGGA 187
||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||
Sbjct 22 ATGAATCCTGAATATGACTATTTGTTCAAGCTTTTGCTCATTGGTGATTCTGGTGTTGGA 81
Query 188 AAATCATGCTTGCTTCTAAGATTTGCTGATGATTCTTACCTGGATAGCTACATAAGCACC 247
|| ||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct 82 AAGTCATGCTTGCTTCTAAGGTTTGCTGATGATTCCTACCTGGATAGCTATATCAGCACC 141
Query 248 ATTGGTGTTGACTTTAAAATTCGCACAGTTGAGCAGGACGGAAAGACCATCAAACTCCAG 307
|||||||||||||||||||| |||||||| || || || |||||||||||||||||||||
Sbjct 142 ATTGGTGTTGACTTTAAAATCCGCACAGTCGAACAAGATGGAAAGACCATCAAACTCCAG 201
Query 308 ATCTGGGACACAGCAGGCCAAGAACGTTTCAGGACAATCACTAGCAGCTACTACAGAGGA 367
|| ||||| || ||||||||||| |||||||| || || |||||||| ||||||||||||
Sbjct 202 ATTTGGGATACCGCAGGCCAAGAGCGTTTCAGAACGATTACTAGCAGTTACTACAGAGGA 261
Query 368 GCTCATGGGATCATTGTCACTTATGATGTCACAGACCTAGAGAGCTTCAACAACGTCAAA 427
|||||||| || ||||| ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 262 GCTCATGGAATAATTGTGACTTATGATGTAACAGATCTAGAAAGCTTCAACAACGTCAAG 321
Query 428 CAATGGCTGAATGAAATTGACCGTTACGCTAGCGAAAATGTGAACAAGCTACTGGTTGGG 487
|||||||| |||||||| ||||||||||| || || ||||| ||||||||||||||||||
Sbjct 322 CAATGGCTAAATGAAATCGACCGTTACGCCAGTGAGAATGTTAACAAGCTACTGGTTGGG 381
Query 488 AACAAGAACGATCTCACTTCACAGAAAGTTGTATCCACTGAGACAGCTAAGGCTTTTGCA 547
|||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 382 AACAAGTGTGATCTCACATCACAGAAAGTTGTATCCACTGAGACAGCCAAGGCTTTCGCA 441
Query 548 GATGAACTTGGGATCCCATTCTTGGAAACAAGTGCTAAAAATGCAACCAATGTGGAAGAA 607
||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 442 GATGAACTTGGAATCCCATTCTTGGAAACAAGTGCTAAGAATGCTACCAATGTCGAAGAA 501
Query 608 GCTTTCATGGCTATGACTGCTGCAATTAAGACAAGAATGGCTAGCCAACCAGCTGGAGG- 666
||||||||||| |||||||||||||| |||||||||||||| |||||||| || |||||
Sbjct 502 GCTTTCATGGCCATGACTGCTGCAATCAAGACAAGAATGGCGAGCCAACCTGCAGGAGGA 561
Query 667 TGCCAAGCCACCAACGGTCCAGATCCGTGGACAGCCAGTGAACCAGCAATCAGGCTGTTG 726
| | ||||||||||||||||||||||| ||||| || || |||||||||||||| || ||
Sbjct 562 T-CTAAGCCACCAACGGTCCAGATCCGAGGACAACCTGTTAACCAGCAATCAGGTTGCTG 620
Query 727 TTCTTCTTGATT 738
|| ||||||||
Sbjct 621 CTCCTCTTGATT 632
> Ahg478519 jgi|Araly1|478519|fgenesh2_kg.3__1220__AT3G11730.1
Length=813
Score = 272 bits (147), Expect = 3e-72
Identities = 370/477 (78%), Gaps = 18/477 (4%)
Strand=Plus/Plus
Query 146 TATCTGTTCAAGCTTCTGCTT-ATTGGTGA-TTCTGGTGTTGGAAAATCATG-CTTGCTT 202
||||||||||||||| || || || ||||| | || ||||||||||||||| ||| |||
Sbjct 56 TATCTGTTCAAGCTTTTG-TTGATCGGTGACTCCT-CTGTTGGAAAATCATGCCTT-CTT 112
Query 203 CTAAGATTTGCTGATGATTCTTACCTGGATAGCTACATAAGCACCATTGGTGTTGACTTT 262
|| |||| ||||||||| ||||| | || |||||||||||||||||||||||||||||
Sbjct 113 CTTCGATTCGCTGATGATGCTTACATTGACAGCTACATAAGCACCATTGGTGTTGACTTC 172
Query 263 AAAATTCGCACAG-TTGAGCAGGACGGAAAGACCATCAAACTCCAGATCTGGGACACAGC 321
|||||| | || | |||||||||| || ||||| || || || || || ||||| || ||
Sbjct 173 AAAATTAGAAC-GATTGAGCAGGATGGGAAGACGATTAAGCTGCAAATTTGGGATACTGC 231
Query 322 AGGCCAAGAACGTTTCAGGACAATCACTAGCAGCTACTACAGAGGAGCTCATGGGATCAT 381
|| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 232 TGGACAGGAGCGTTTCAGGACCATCACTAGCAGCTACTACAGAGGAGCTCATGGGATCAT 291
Query 382 TGTCACT-TATGAT-GTCACAGACCTAGAGAGCTTCAACAACGTCAAACAATGGCTGAAT 439
| | | |||||| || || || | || ||||||||||| || || || ||| ||| |
Sbjct 292 TATTG-TGTATGATTGT-ACTGAGATGGAAAGCTTCAACAATGTGAAGCAGTGGTTGAGT 349
Query 440 GAAATTGACCGTTACGCTAGCGAAAATGTGAA-CAAGCTACTGGTTGGGAACAAGAACGA 498
|| || || | || |||| || | ||| | |||||| || | || |||||||| ||
Sbjct 350 GAGATCGATAGATATGCTAATGAGAGTGT-ATGCAAGCTTCTAATCGGTAACAAGAATGA 408
Query 499 TCTCACTTCACAG-AAAGTTGTATCCACTGAGACAGCTAAGGCTTTTGCAGATGAACTTG 557
| | || | | |||||||| |||||||| || | ||||| || |||||||| || |
Sbjct 409 TATGG-TTGAAAATAAAGTTGTTTCCACTGAAACTGGAAAGGCCTTAGCAGATGAGCTAG 467
Query 558 GGAT-CCCATTCTTGGAAACAAGTGCTAAAAATGCAACCAATGTGGAAGAAGCTTTC 613
| || ||| |||||| | || ||||| || || | | ||| || ||| |||| |||
Sbjct 468 GAATTCCCTTTCTTG-AGACCAGTGCCAAGGATTCTATCAACGTCGAACAAGCATTC 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5