BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47210.1
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494257 jgi|Araly1|494257|fgenesh2_kg.8__73__AT5G47210.1 2052 0.0
> Ahg494257 jgi|Araly1|494257|fgenesh2_kg.8__73__AT5G47210.1
Length=1546
Score = 2052 bits (1111), Expect = 0.0
Identities = 1418/1559 (91%), Gaps = 50/1559 (3%)
Strand=Plus/Plus
Query 1 AACTCAGGAAGGGTTTATAGATTAGGTTTTTAAGTCGCACCTCTCTCTCTCACTGCCGCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 AACTCAGGAAGGGTTTATAGATTAGGTTTTTAAGTCGCACCTCTCTCTCT--CTGCCGCA 58
Query 61 TCTTTTCTTAGGG-TTCTTGTTTCGCTATCTCTTAAACACAAAC--AGCTCTGTCCGAAT 117
| |||||||||| |||||||||| |||||||||| |||||||| ||| ||||||||||
Sbjct 59 GCATTTCTTAGGGTTTCTTGTTTCACTATCTCTTAGACACAAACAAAGCACTGTCCGAAT 118
Query 118 AATCTCTCTTCAAGTACCTCTTTTTTCTGATTCTGTATATCGCCATGAATTACTGATTTC 177
||||||||||| | ||| || ||| | ||||||||||||||| |||| |||||||| |||
Sbjct 119 AATCTCTCTTCGATTACTTC-TTTCT-TGATTCTGTATATCGTCATGGATTACTGA-TTC 175
Query 178 -CCTCTCTAT-AAACCCATCAAAGTAAACCAATTTCTCCTGTGAC-TTGTACCTAACTCG 234
||||||||| ||||||||||||| ||| |||||||||| ||||| ||||||||||||||
Sbjct 176 ACCTCTCTATAAAACCCATCAAAGCAAAGCAATTTCTCCGGTGACTTTGTACCTAACTCG 235
Query 235 ATC-TTACCAGACTGGTGATGGCGTCTTTGAACCCTTTCGATCTTCTAGGAGATGATGCT 293
||| ||| |||| |||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 236 ATCTTTATCAGAGTGGTAATGGCGTCTTTGAACCCTTTCGATCTTTTAGGAGATGACGCT 295
Query 294 GAGGATCCAAGCCAGCTCGCTGTGGCTTTGTCTCAGAAAGTCGAGAAAGCTGCTGCTGCT 353
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 296 GAGGATCCAAGCCAGCTCGCTGTGGCTTTATCTCAGAAAGTCGAGAAAGCTGCTGCTACT 355
Query 354 GTTCAGCCTCCTAAGGCCGCTAAGTTCCCAACCAAGCCGGCTCCTCCTTCTCAAGCAGTG 413
||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GTTCAGCCTGCTAAGGCTGGTAAGTTCCCAACCAAGCCGGCTCCTCCTTCTCAAGCAGTG 415
Query 414 AGGGAGTCGAGGAATGCTCC-TCA--AGGAGGTCGTGGTGGGACTGGTGGACGTGGTGGA 470
|||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||
Sbjct 416 AGGGAGTCGAGGAATGCTCCTTCAGGAGGAGGTCGTGGTGGTACTGGTGGACGTGGTGGA 475
Query 471 TTTTCCCGTGGCAGGGGTAATGGTGGATACAACCGGGACAACAGGAACAATGATGCTCCT 530
||||||||||| |||||||||||||| | |||||||| || |||||||||||||||||
Sbjct 476 TTTTCCCGTGGAAGGGGTAATGGTGG--A-AACCGGGAGTACCGGAACAATGATGCTCCT 532
Query 531 GGAAATGAGAATGGATTTTCTGGAGGATACAGGAGACCTTCTGAAGATGCTGATGGAGCA 590
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 533 GGAAATGAGAATGGATTTTCTGGAGGATTC---AGACCTTCTGAAGATGCTGATGGAGCA 589
Query 591 AGCCGTGGTGGGTCTGTTGGTGGATACCGTGTTGGCGGTGGTCGTGAAGGACCTCGCCGT 650
|| ||||||||||||| ||||||||||||| |||||||| |||||| |||||||||||||
Sbjct 590 AGGCGTGGTGGGTCTGATGGTGGATACCGTCTTGGCGGTAGTCGTGGAGGACCTCGCCGT 649
Query 651 GGTGGAGTTGCCAACGGGGAATCTGGTGATGTTGAACGCCCACCGAGGAATTATGACCGC 710
|||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct 650 GGTGGATTTGCCAATGGGGAATCAGGTGATGTTGAACGCCCACGGAGGAATTATGAGCGC 709
Query 711 CATAGCAGGACAGGTCATGGTACTGGCATGAAACGTAATGGTGGAGGTCGTGGAAACTGG 770
|||||| |||| |||| ||||| |||| | |||||| ||||||| |||||||||||||||
Sbjct 710 CATAGCGGGACTGGTCGTGGTAATGGCCTAAAACGTGATGGTGGTGGTCGTGGAAACTGG 769
Query 771 GGCACTACTGAAGATGATATCCCTCCAACGTCTGAGGAACCTACCACAGAGGTTGAGAAG 830
||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||
Sbjct 770 GGCACTACTGAAGATGATATCCCTCCAGCGACTGAGGAACCCACCACGGAGGTTGAGAAG 829
Query 831 AGCCCTGTTGCTGAGAAGCAAGGAGGTGAGGATGAAACCCctgaagcaaagaaagaactc 890
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | |
Sbjct 830 AGCCCTGTTGCTGAGAAGCAAGGAGGTGAGGATGAAACCGCTGAAGCAAACAAAGAGCCC 889
Query 891 actgcggaagagaaagcacagaaagaagctgaagaagctgaagcCAGGGAGATGACTCTA 950
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 ACTGCCGAAGAGAAAGCACAGAAAGAAGCTGAAGAAGCTGAAGCCAGGGAGATGACTCTA 949
Query 951 GAAGAGTATGAGAAAATTCTGGAGGAGAAGAAGAAGGCTCTGCAAGCCACAAAGGTTGAG 1010
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GAAGAGTATGAGAAGATTCTGGAGGAGAAGAAGAAGGCTCTGCAAGCCACAAAGGTTGAG 1009
Query 1011 GAAAGGAAAGTTGACACCAAAGTGTTTGAGTCCATGCAACAGCTCTCTAACAAGAAGAAC 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GAAAGGAAAGTTGACACCAAAGTGTTTGAGTCCATGCAACAGCTCTCTAACAAGAAGAAC 1069
Query 1071 ACCGATGAAGAAATCTTCATCAAGCTGGGATCTGACAAGGAAAAACGCAAAGATGCTACT 1130
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 1070 ACCGATGAAGAAATCTTCATCAAGCTGGGATCTGAGAAGGACAAACGCAAAGATGCTGCT 1129
Query 1131 GAGAAGGCCAAAAAGTCGTTGAGCATTAATGAGTTCTTGAAGCCGGCTGATGGAAAGAGG 1190
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1130 GAGAAGACCAAAAAGTCGTTGAGCATTAATGAGTTCTTGAAGCCGGCTGATGGAGAGAGG 1189
Query 1191 TACAACGGGAGAGGTGGAGGC--TCCC-GCGGAAGA-G-G-AGGTCGCGGTGGTCGTG-- 1242
|||||||||||||||||| | | | ||| | | | |||||||||||||||||
Sbjct 1190 TACAACGGGAGAGGTGGAAACCGTGGAAGAGGAGGTTGTGGAGGTCGCGGTGGTCGTGAA 1249
Query 1243 --GTGA----A-GGAGGAAACCAAAGGTATGCAAAAGAAGCTGC---AGCTCCGGCGATT 1292
| || | ||||||||||||||| ||| |||| ||||| |||||||||||||
Sbjct 1250 CAGAGAGGTGACGGAGGAAACCAAAGGAATGTAAAACCTGCTGCTCCAGCTCCGGCGATT 1309
Query 1293 GGAGACACAGCTCAGTTCCCTTCGTTGGGCTAGTAAAGA-CCC--C-TGGTCCTTCAGCC 1348
| |||||||||||||||||||||| ||||| |||||||| ||| | |||||||||||||
Sbjct 1310 GAAGACACAGCTCAGTTCCCTTCGCTGGGCAAGTAAAGAACCCTTCCTGGTCCTTCAGCC 1369
Query 1349 TCGCTATCTCTGTCTTTCGTTTCTCTTTGGTTGAATTTTGTTAGTTTTATAATTTTTTGT 1408
|| ||||| ||| || |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1370 TCTCTATCGCTGCCTCTCGTTTCTCTTTGGTTGAATTTTGTTAGCTTTATTATTTTTTGT 1429
Query 1409 TACACTTTCTGAAGGTC-TTTTCTGCGAAACTATTACGT----TTTTTAAGTTATGaaaa 1463
||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||
Sbjct 1430 TACACTTTCTGAAGGTCCTTTTCTGCGAAACCATTACGTGGGCTTTTTAAGTTATGAAAA 1489
Query 1464 aaaTTATTAAGATATTTTTCTCTCTAATTTTGGTATTACACATTCGATCTTTCTTTTCG 1522
||||||||| |||| || ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1490 AAATTATTATGATACTT--CTCTCTAATTTTGGTATTACACACTCGATCTTTCTCTTCG 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57097277255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5