BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47230.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494253 jgi|Araly1|494253|fgenesh2_kg.8__69__AT5G47230.1 1088 0.0
Ahg493127 jgi|Araly1|493127|fgenesh2_kg.7__2560__AT4G17490.1 331 6e-90
> Ahg494253 jgi|Araly1|494253|fgenesh2_kg.8__69__AT5G47230.1
Length=1170
Score = 1088 bits (589), Expect = 0.0
Identities = 710/764 (93%), Gaps = 25/764 (3%)
Strand=Plus/Plus
Query 445 AAATCAAAATC-AGTTTGAACCGGAGCTTAAATCTCAAATTCGTAAACCGCCATTGAAGA 503
||||||||||| || ||||||||||| || |||||||||||||||||||||||||||| |
Sbjct 413 AAATCAAAATCAAG-TTGAACCGGAGATTCAATCTCAAATTCGTAAACCGCCATTGAAAA 471
Query 504 TTTCGCTTCCAGCTAAAACAGAGTGGATTCAATTCGCAGCTGAAAACACCAAACCGGAAG 563
| |||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||
Sbjct 472 TCTCGCTTCCAGCTAAAACAGAGTGGATCCAATTCGCACCTGAAATTACCAAACCGGAAG 531
Query 564 TTACTAAACCGGTTTCGGAAGAAGAGAAGAAGCATTACAGAGGAGTAAGACAAAGACCGT 623
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 532 TTACTAAACCGGTTTCAGAAGAAGAGAAGAAGCATTACAGAGGAGTGAGACAAAGACCGT 591
Query 624 GGGGGAAATTCGCGGCGGAGATTCGTGACCCGAATAAACGCGGATCTCGCGTTTGGCTTG 683
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 592 GGGGGAAATTCGCGGCGGAGATTCGTGACCCGAATAAACGCGGATCCCGCGTTTGGCTTG 651
Query 684 GGACGTTTGATACAGCGATTGAAGCGGCTAGAGCTTATGACGAAGCAGCGTTTAGACTAC 743
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |
Sbjct 652 GGACGTTTGATACAGCGATTGAAGCGGCAAGAGCTTATGATGAAGCAGCGTTTAGGCTTC 711
Query 744 GAGGATCGAAAGCGATTTTGAATTTCCCTCTTGAAGTTGGGAAGTGGAAACCACGCGCCG 803
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GAGGTTCGAAAGCGATTTTGAATTTCCCTCTTGAAGTTGGGAAGTGGAAACCACGCGCCG 771
Query 804 ATGAAGGTGAGAAGAAACGGAAGAGAG---ACGAT---GATGAGAAAGTGACTGTGGTTG 857
| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 772 ACGAAGGTGAGAAGAAACGGAAGAGAGACAACGATGAAGATGAGAAAGTGACAGTGGTTG 831
Query 858 AGAAAGTGTTGAAGACGGAACAGAGCGTTGACGTTAACGGTGGAGAGACGTTTCCGTTTG 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AGAAAGTGTTGAAGACGGAACAGAGCGTTGACGTTAACGGTGGAGAGACGTTTCCGTTTG 891
Query 918 TAACGTCGAATTTAACGGAATTATGTGACTGGGATTTAACGGGGTTTCTTAACTTTCCGC 977
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 892 TAACGTCGAATTTAACGGAGTTATGTGACTGGGACTTAACGGGGTTTCTTAACTTTCCGC 951
Query 978 TTCTGTCGCCGTTATCTCCTCATCCACCGTTTGGTTATTCCCAGTTGACCGTTGTTTGAT 1037
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 952 TTCTGTCGCCGTTATCTCCTCATCCATCGTTTGGTTATTCTCAGTTGACCGTTGTTTGAT 1011
Query 1038 TAGttttttttGAGTTTTTGAACGATGTGTATGCTGACGTGGAC----G-TACACGTAGG 1092
| ||||||||| ||||| | | |||||||||||||||||||| | ||||||||||
Sbjct 1012 TT-TTTTTTTTG-GTTTTGG--CTATGTGTATGCTGACGTGGACTTATGGTACACGTAGG 1067
Query 1093 TGCATGCGAT--GaaaaaaaCATCTAt-t-t--gttcatatttttgcgtt-tttctattt 1145
|||||||||| |||||||| || ||| | | |||||||||||||| || |||||||||
Sbjct 1068 TGCATGCGATTAGAAAAAAATATATATATATTTGTTCATATTTTTGC-TTATTTCTATTT 1126
Query 1146 gttcattctttttcacaattcacaatacattatttCAGTTAATG 1189
|||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1127 GTTCATTCTTTTTCACAAATCACAATACATTCTTTCAGTTAATG 1170
Score = 453 bits (245), Expect = 1e-126
Identities = 362/417 (87%), Gaps = 14/417 (3%)
Strand=Plus/Plus
Query 4 AAGTCCATTTCACGACAAAGTCACCAATGCTTCTTTTACATGTATATATACTTCTTTCCA 63
|||||| || ||||||||||||||||||||||| | | |||||||||||| ||||||||
Sbjct 1 AAGTCCCCTTGACGACAAAGTCACCAATGCTTCTCTCATATGTATATATACATCTTTCCA 60
Query 64 CTCCCTCTTCTCTACTCAAATCAAAT-CT------TCTTCCTTCTCTGTTTTCTTAAGCT 116
||| |||||||||||||||||||||| || |||||||||||| |||||||||| |
Sbjct 61 CTCTCTCTTCTCTACTCAAATCAAATCCTCAACCATCTTCCTTCTCTATTTTCTTAAGTT 120
Query 117 TTTTGAAAATTTTATCAATGGCGACTCCTAACGAAGTATCTGCACTTTGGTTCATCGAGA 176
|||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTGACAGTTTTATCAATGGCCACTCCTAACGAAGTATCTGCACTTTGGTTCATCGAGA 180
Query 177 AACATCTACTCGACGAGGCTTCTCCTGTGGCTACAGATCCATGGATGAAGCACGAATCAT 236
|||| |||||||||||| |||| || ||||||||||| |||||||||||| | |||||||
Sbjct 181 AACACCTACTCGACGAGACTTCACCGGTGGCTACAGACCCATGGATGAAGAAGGAATCAT 240
Query 237 CATCAGCAACAGAATCTAGCTCTGACTCTTCTTCTAT-CATCTTCGGATCATCGTCCTCT 295
|| ||||| ||||||||||| || ||||||||||| | ||||| |||||| || |||
Sbjct 241 CA---GCAACTGAATCTAGCTCCGATTCTTCTTCTATGC-TCTTCCAATCATCATCGTCT 296
Query 296 TCTTTCGCCCCAATTGATTTCTCTGAATCCGTATGCAAACCTGAAATCATCGATCTCGAT 355
|||||| | |||| |||||||||||||| | ||||||||| |||||||| |||||||||
Sbjct 297 TCTTTCTCTCCAAATGATTTCTCTGAATATGAATGCAAACCGGAAATCATTGATCTCGAT 356
Query 356 ACTCCCAGAT-CTATGGAATTTCTATCGATTCCATTTGAATTTGACTCAGAAGTTTC 411
|| || |||| | ||||| ||| ||||||||||||||||||||||||| ||| ||||
Sbjct 357 ACACCGAGATTC-ATGGATTTTATATCGATTCCATTTGAATTTGACTCCGAAATTTC 412
> Ahg493127 jgi|Araly1|493127|fgenesh2_kg.7__2560__AT4G17490.1
Length=940
Score = 331 bits (179), Expect = 6e-90
Identities = 463/594 (78%), Gaps = 44/594 (7%)
Strand=Plus/Plus
Query 471 TTAAATCTCAAATTCGTAAACCGCCATTGAAGATTTCGCTTCCAGCTAA---AAC-AGAG 526
||||||| | || ||| |||||||| ||||||| |||| ||| | || ||| | ||
Sbjct 302 TTAAATC-C-AA-TCGGAAACCGCCGTTGAAGA--TCGC-GCCACCGAACCGAACTA-AG 354
Query 527 TGGATTCAATTCGC-AGCTGAAAACACCAAACCGGAAGTTACTAAACCGGTT-T--CGGA 582
|||||||||||||| | | |||| | | ||||||||| || | ||||||| | | |
Sbjct 355 TGGATTCAATTCGCAACCGGAAATC-CTAAACCGGAACTTCCCGTACCGGTTGTAGCAGC 413
Query 583 AGAAGAGAAGAAGCATTACAGAGGAGTAAGACA-AAGACCGTGGGGGAAATTCGCGGCGG 641
||||||||||| ||||||||||||||| ||| | || ||||||||||||||||||||||
Sbjct 414 AGAAGAGAAGAGGCATTACAGAGGAGTGAGA-ATGAGGCCGTGGGGGAAATTCGCGGCGG 472
Query 642 AGATTCGTGACCCGAATAAACGCGGATCTCGCGTTTGGCTTGGGACGTTTGATACAGCGA 701
||||||| || ||||| || ||| || | |||||||| ||||||||||| || ||||
Sbjct 473 AGATTCGAGATCCGAACCGTCGTGGAACTAGAGTTTGGCTCGGGACGTTTGAGACGGCGA 532
Query 702 TTGAAGCGGCTAGAGCTTATGACGAAGCAGCGTTTAGACTACGAGGATCGAAAGCGATTT 761
| ||||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||
Sbjct 533 TCGAAGCGGCTAGAGCTTACGACAAAGCAGCGTTTAGACTCCGAGGATCAAAAGCGATTC 592
Query 762 TGAATTTCCCTCTTGAAGTTGGGAAGTGGAAACCACGCGCCGATGA-----A-GG--TGA 813
|||||||||| ||||||||||| |||||||| |||||||| || || | || |||
Sbjct 593 TGAATTTCCCGCTTGAAGTTGGCAAGTGGAATCCACGCGCTGAAGATGGTCATGGCCTGA 652
Query 814 G-AAGAAACGGAAGAGAGACGATGATGAG-A--AAGTGACTGTGGTTGA-GAAAGTGTTG 868
|| |||||||||||||||| || | | | ||||||| ||||| || ||| ||
Sbjct 653 ACAACAAACGGAAGAGAGACGGCGAGGGGGAGGAAGTGACGGTGGT-GAAGAAGGTACCA 711
Query 869 AAGACGGAACAGAGCGTT--GACGTTAACGGTGGAGAGAC-GTTTCCGTTTGTAACGTC- 924
|||||||| |||| || | ||||| ||| || |||| ||| || | |||||
Sbjct 712 AAGACGGAGGAGAG--TTACGCCGTTAGCGGCGGCGAGAATGTTGA-GTCGGCGACGTCA 768
Query 925 GAATTTAACGGAATTATG-TGACTGGGATTTAACGGGGTTTCTTAACTTTCCGCTTCTGT 983
| ||| |||| || || ||||||||| | |||| |||||| | | | |||||| | |
Sbjct 769 GG-TTTGACGGCGTT-TGATGACTGGGACATGACGGAGTTTCTGAGCATGCCGCTTTTAT 826
Query 984 CGCCGTTATCTCCTCATCCACCGTTTGGTTATTCC-CAGTTGACCGTTGTTTGA 1036
||||||||||||| || |||||||||||| || || || |||||||||||||||
Sbjct 827 CGCCGTTATCTCCACACCCACCGTTTGGTCAT-CCACAATTGACCGTTGTTTGA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5