BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47240.1
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915315 jgi|Araly1|915315|Al_scaffold_0008_66 1720 0.0
> Ahg915315 jgi|Araly1|915315|Al_scaffold_0008_66
Length=1095
Score = 1720 bits (931), Expect = 0.0
Identities = 1053/1109 (95%), Gaps = 19/1109 (2%)
Strand=Plus/Plus
Query 206 ATGGATTCTGTTTCTCTTTCTGAGGTTACTGTC-ATTAAAGGAACAACACATTTGGGTTT 264
||||||||||||||||||||||||||||||| | ||| | ||| |||||||||||||||
Sbjct 1 ATGGATTCTGTTTCTCTTTCTGAGGTTACTG-CTATT--A-GAAGAACACATTTGGGTTT 56
Query 265 TATGCACAGTTTCAGACAGCCATTTTGTGGTG-TCAAAATATCTCCAAAGTTCTATTTAT 323
|||||||||||||||||| ||||||| ||||| || |||| |||||||||||| || |
Sbjct 57 TATGCACAGTTTCAGACAACCATTTTCTGGTGTTC-CAATACCTCCAAAGTTCTGTTCCT 115
Query 324 CCAAAGTTGATGGACCAAAGGCAATATCT-TCGAGCAGCAACACAAAGAGTCAATTTGTT 382
|||||||||||||||||||||||| || | || | ||||| |||||||| |||| ||||
Sbjct 116 CCAAAGTTGATGGACCAAAGGCAACAT-TGTC-A--AGCAATACAAAGAGCCAATCTGTT 171
Query 383 TATGGAGGAGGAAGCATAGCTGCAACTTCAGATTCAGGTTATAAGATGAATGGAGTAAAC 442
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 172 TAT---GGAGGAAGCATAGCTGCAACTTCAGATTCAGGTTACAAGATGAATGGAGTAAAC 228
Query 443 CTAAAAAGCAGAACATTGATGAGTTCTGCAGTTAAAGAAAGATCATTACTTGATGCTTAT 502
|||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 229 CTAAAAAGCAGAACATTGATCAGTTCT---GTTAAAGAAAGATTATTACTTGATGCTTAT 285
Query 503 GATGATGAGTATGGTGGAGTAATAGTAGATCATGGAAAATTACCATCAAACCCTTATGCT 562
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 286 GATGATGAGTATGGTGGAGTAATAGTTGATCATGGAAAATTACCATCAAACCCTTACGCT 345
Query 563 TTCGCTTCTATGCTTCGAGCTTCTCTATCCGATTGGAGAAGAAAGGGAAAGAAAGGAGTT 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TTCGCTTCTATGCTTCGAGCTTCTCTATCCGATTGGAGAAGAAAGGGAAAGAAAGGAGTT 405
Query 623 TGGTTAAAGTTACCTGTGGAACAATCAGAATTAGTCCCAATAGCTATAAAGGAAGGTTTT 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TGGTTAAAGTTACCTGTGGAACAATCAGAATTAGTCCCAATAGCTATAAAGGAAGGTTTT 465
Query 683 GAGTATCATCATGCAGAGAAAGGATATGTAATGTTAACATATTGGATACCAGAGGAGGAA 742
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 466 GAGTATCATCATGCAGAGAAACGATATGTGATGTTAACATATTGGATACCAGAGGAGGAA 525
Query 743 CCTAGTATGCTTCCTGCAAATGCTTCACATCAAGTTGGTGTTGGAGGTTTTGTATTAAAT 802
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 526 CCTAGTATGCTTCCTGCAAATGCTTCACATCAAGTTGGTGTTGGAGGTTTTGTACTAAAT 585
Query 803 CAACATAAAGAGGTGCTTGTGGTACAAGAAAAGTATTGTGCTCCTTCGATTACTGGTCTA 862
|||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 586 GAACAGAAAGAGGTGCTTGTGGTACAAGAAAAGTATTGTGCTCCATCGATTACAGGTCTA 645
Query 863 TGGAAGTTACCAACAGGGTTTATTAATGAATCTGAAGAGATTTTCTCTGGTGCTGTAAGA 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 TGGAAGTTACCAACAGGGTTTATTAATGAATCTGAAGAGATTTTCTCTGGTGCTGTAAGA 705
Query 923 GAAGTCAAGGAAGAAACTGGGGTAGATACAGAGTTCTCAGAGGTTATAGCTTTCAGACAT 982
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GAAGTCAAGGAGGAAACTGGGGTAGATACAGAGTTCTCAGAGGTTATAGCTTTCAGACAT 765
Query 983 GCTCACAACGTTGCATTTGAGAAATCTGATCTGTTCTTCATCTGTATGTTGAGACCACTC 1042
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GCTCACAACGTTGCATTTGAGAAATCTGATCTGTTCTTCATCTGTATGTTGAGACCACTT 825
Query 1043 TCTGATAAGATAATCATCGATGCTCTTGAGATCAAAGCCGCAAAGTGGATGCCATTGGCT 1102
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 826 TCTGATAAGATAATCATCGATGGTCTTGAGATCAAAGCCGCAAAGTGGATGCCTTTGGCG 885
Query 1103 GAATTTGTGGAGCAACCGATGATAAGAGGAGACAAAATGTTTAAAAGAGTGATTGAAATA 1162
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 886 GAATTTGTGGAGCAACCGATGATAAGAGAAGACAAAATGTTTAAGAGAGTGATTGAAATC 945
Query 1163 TGCGAGGCGAGATTAAGCCATCGGTACTGCGGTCTTTCTCCTCATCGACTTGTCTCTACT 1222
|||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 946 TGCGAGGCGAGACTAAGGCATCGGTACTGCGGTCTTTCTCCTCATAGACTTGTCTCTACT 1005
Query 1223 TTTGATGGCAAACCTTCTTCTCTCTATTACAACGTTGTTGATGATGATCATGATCCTTCC 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 TTTGATGGCAAACCTTCTTCTCTCTATTACAACGTTGTTGATGATGATCATGATCCTTCC 1065
Query 1283 CACTCCAATTGTAGCACTGAGT-TTTATA 1310
||||||||||||| |||||| | ||||||
Sbjct 1066 CACTCCAATTGTAACACTGATTATTTATA 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55840299170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5