BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47250.1
Length=2952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948180 jgi|Araly1|948180|scaffold_800067.1 2401 0.0
> Ahg948180 jgi|Araly1|948180|scaffold_800067.1
Length=1498
Score = 2401 bits (1300), Expect = 0.0
Identities = 1429/1492 (96%), Gaps = 6/1492 (0%)
Strand=Plus/Plus
Query 1224 TTGAAGTTATAAGAAAGACTATGGCATCTAAATCTACTGTGATTCAATGGCGTCGTGCAC 1283
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGAAGTAATCAGAAAGACTATGGCATCTAAATCTACTGTGATTCAATGGCGTCGTGCAC 60
Query 1284 TCGATACTTTGGAGTCTTATCGGAGTGAGATGAAAGGTACAGAGAAGGGAATATTTCAAG 1343
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TCGATACTTTGGAGTCTTATCCGAGTGAGATGAAAGGTACAGAGAAGGGCATATTTCAAG 120
Query 1344 TTTTGAAGTTGAGCTATGATTATTTGA-AAACAAAAAATGCCAAGTGTTTTCTGTATTGT 1402
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 121 TTTTGAAGTTGAGCTATGATTATTT-AGAAACAAAAAATGCCAAGTGTTTTCTGTATTGT 179
Query 1403 GCTTTATTTCCCAAGGCATATTATATCAAACAAGATGAGCTGGTAGAGTATTGGATAGGT 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCTTTATTTCCCAAGGCATATTATATCAAACAAGATGAGCTGGTAGAGTATTGGATAGGT 239
Query 1463 GAGGGTTTCATAGATGAAAAAGACGGAAGAGAGAGAGCAAAAGATCGAGGCTATGAGATC 1522
||||||||||| ||||||||||||||||||| ||||||||| |||||| |||||||||||
Sbjct 240 GAGGGTTTCATCGATGAAAAAGACGGAAGAGGGAGAGCAAAGGATCGATGCTATGAGATC 299
Query 1523 ATCGATAATCTTGTTGGGGCAGGTTTGTTATTAGAGTCTAATAAGAAAGTGTATATGCAT 1582
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 ATCGATCATCTTGTTGGGGCAGGTTTGTTATTGGAGTCTAATAAGAAAGTGTATATGCAT 359
Query 1583 GATATGATCCGTGATATGGCATTGTGGATAGTATCTGAATTTAGGGATGGAGAAAGATAT 1642
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 360 GATATGATCCGTGAGATGGCATTGTGGATAGTATCTGAATTTCGGGATGGAGAAAGATTT 419
Query 1643 GTTGTGAAAACAGATGCTGGTTTAAGCCAACTGCCTGATGTCACCGATTGGACAACTGTG 1702
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 420 GTTGTGAAAACAGATGCTGGTTTAAGCCAACTGCCTGATGTCACGGATTGGACAACCGTG 479
Query 1703 ACAAAGATGTCTCTGTTCAACAATGAGATTAAGAACATACCAGACGATCCTGAATTTCCT 1762
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACAAAGATGTCTCTCATCAACAATGAGATTAAGAACATACCAGACGATCCTGAATTTCCT 539
Query 1763 GACCAGACAAATCTTGTAACCTTGTTCCTTCAAAATAACAGGTTGGTAGATATTGTTGGT 1822
||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 540 GACCAGACAAATCTTGTGACCTTGTTCCTTCAAAATAACAAGCTGGTAGATATTGTTGGT 599
Query 1823 AAATTCTTTCTGGTCATGTCGACTCTGGTGGTTTTGGATCTATCTTGGAACTTCCAAATC 1882
| |||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 AGATTCTTTCAGGTCCTGTCGACTCTGGTGGTTTTGGATCTATCTTGGAACCTCCAAATC 659
Query 1883 ACCGAGTTGCCAAAAGGAATCTCGGCGTTGGTTTCTTTGCGGCTTCTCAACTTATCAGGG 1942
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 660 ACCGAGTTGCCAAAAGGAATTTCGGAGTTGGTTTCTTTGCGGCTTCTCAACTTATCAGGG 719
Query 1943 ACGAGTATAAAGCATCTGCCGGAAGGTTTAGGAGTCTTGAGTAAATTGATTCACTTGAAT 2002
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 ACGAGTATAAAGAATCTGCCGGAAGGTTTAAGAGTCTTGAGTAAATTGATTCACTTGAAT 779
Query 2003 TTGGAGTCCACTTCCAATCTTCGAAGCGTCGGTCTGATTTCAGAATTACAAAAGTTGCAG 2062
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 TTGGAGTCCACTTCCAATCTTCGAAACGTCGGTCTGATTTCAGAATTACAAAAGTTGCAG 839
Query 2063 GTTCTCAGATTTTATGGTTCTGCTGCTGCATTAGATTGCTGCTTGCTCAAGATCTTGGAG 2122
||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 840 GTTCTAAGATTTTATGGTTCTGCTGCTGCATTAGATTCCTGCTTGCTGAAGATCTTGGAG 899
Query 2123 CAGTTGAAGGGTTTACAACTTTTGACCGTTACTGTGAATAACGATTCTGTTTTGGAAGAG 2182
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 CAGTTGAAGGGTCTACAACTTTTGACCGTTACTGTGAACAACGATTCTGTTTTGGAAGAG 959
Query 2183 TTTCTAGGAAGCACAAGATTGGCAGGGATGACGCAGGGTATATATCTAGAAGGACTTAAA 2242
||| |||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 960 TTTTTAGGAAGCACAAGATTGGCAGGGATGACTCAGGGTCTATATCTCGAAGGACTTAAA 1019
Query 2243 GTATCATTTGCAGCCATTGGT-ACGTTGAGTAGTCTCCACAAACTTGAAATGGTAAACTG 2301
||| ||||||||||| ||||| | |||||||||||| |||||||||||| | ||||||||
Sbjct 1020 GTACCATTTGCAGCCGTTGGTGA-GTTGAGTAGTCTTCACAAACTTGAACTAGTAAACTG 1078
Query 2302 CGATATCACAGAGTCGGGAACAGAATGGGAAGGTAAGAGAAGAGACCAGTATTCTCCATC 2361
||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||
Sbjct 1079 CGATATCACAGAGTCAGGAACAGAATGGGAAGGCAAAAGGAGAGACCAGTATTCTCCATC 1138
Query 2362 CACATCATCCAGTGAAATCACTCCAAGCAATCCATGGTTCAAGGATCTCTCAGCTGTGGT 2421
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CACATCATCCAGTCAAATCACTCCAAGCAATCCATGGTTCAAGGATCTCTCAGCTGTGGT 1198
Query 2422 AATAAACTCATGCATACATCTAAAGGATTTGACATGGCTGATGTATGCTGCAAATCTCGA 2481
|||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 1199 AATAAACTCATGTATACATCTAAAGGATCTGACATGGCTGATTTATGCTGCAAATCTTGA 1258
Query 2482 GTCTCTAAGCGTGGAATCCTCGCCTAAGATGACAGAATTAATAAACAAAGAGAAAGCT-C 2540
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1259 GTCTCTAAGCGTAGAATCCTCGCCTAAGATGACAGAATTAATAAACAAAGAGAAAGCTGC 1318
Query 2541 AAGGTGTTGGGGTTGATCCTTTTCAAGAGCTACAAGTCCTTCGTCTACATTATTTGAAGG 2600
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ATG-TGTTGGGATTGATCCTTTTCAAGAGCTACAAGTCCTTCGTCTACATTATTTGAAGG 1377
Query 2601 AACTAGGAAGCATCTATGGGAGTCAAGTCTCTTTTCCAAAACTGAAGCTGAACAAAGTCG 2660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AACTAGGAAGTATCTATGGGAGTCAAGTCTCTTTTCCAAAACTGAAGCTGAACAAAGTCG 1437
Query 2661 ATATAGAAAACTGCCCGAATCTTCATCAACGTCCATTATAAGAAAATCGATG 2712
||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1438 ATATAGAAAACTGCCCGAATCTTCATCAACGTCCATTGTAAGAAAATCGATG 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111452056870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5