BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47300.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915313 jgi|Araly1|915313|Al_scaffold_0008_64 1399 0.0
Ahg928760 jgi|Araly1|928760|scaffold_301217.1 595 2e-169
Ahg318651 jgi|Araly1|318651|fgenesh1_pm.C_scaffold_3001667 95.3 1e-18
Ahg342694 jgi|Araly1|342694|fgenesh1_pg.C_scaffold_3002457 62.1 1e-08
> Ahg915313 jgi|Araly1|915313|Al_scaffold_0008_64
Length=969
Score = 1399 bits (757), Expect = 0.0
Identities = 891/955 (93%), Gaps = 12/955 (1%)
Strand=Plus/Plus
Query 109 ATGAGAAACACATTGATGTTGTCGGACCTTCCAGGAGATTTGTTAGAGGAGATACTTTGT 168
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAAACACATTGGTGATGTCGGACCTTCCAGGAGATTTGTTAGAGGAGATACTTTGT 60
Query 169 CGCGTTCCTGCCACATCTCTGAAGCAGTTACGATCTACTTGCAAACAATGGAACAATTTA 228
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGCGTTCCGGCCACATCTCTGAAGCAGTTACGATCTACTTGCAAACAATGGAACAATTTA 120
Query 229 TTCAACAATGGGAGATTCACAAGAAAACACTTGGATAAAGCCCCAAAGGATTTTCAGAAT 288
||||| ||||||||||||| |||||||||||||||||||||||||||| | |||| ||||
Sbjct 121 TTCAAAAATGGGAGATTCATAAGAAAACACTTGGATAAAGCCCCAAAGCAGTTTCTGAAT 180
Query 289 CTCATGTTGAGCGACTCTAGGGTATT-TTCGATGAGTGTCAGTTTCCATGGAATTCCATC 347
|||||||||| ||| |||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 181 CTCATGTTGAACGAGTCTAGGGT-TTGTTCCATGAGTGTCAGTTTCCATGGAATTCCATC 239
Query 348 TGTAGAGGCCACATGTGAACTTA-GCCTAATCGACTCTTTTTCTAGTTTTGAAGATAAAT 406
||||||||||||| ||||||||| || |||||||||| |||||||||| |||||| |||
Sbjct 240 TGTAGAGGCCACAGGTGAACTTAAGC-TAATCGACTCCGTTTCTAGTTTAGAAGATCAAT 298
Query 407 TCGAGATTTCTCAAGTCTTTCACTGTGACGGCTTATTGTTATGCACCGACGCAGACAACA 466
|||||||||||||||||| ||| |||||||||||||||||||||||||||| | || |
Sbjct 299 TCGAGATTTCTCAAGTCTCTCATTGTGACGGCTTATTGTTATGCACCGACG-A--CA-C- 353
Query 467 CTAGAATCGTGGTTTGGAACCCGTGTACTGGTAAAACTAGGTGGATTGAACCCAATAATC 526
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 354 -TAGAATCGTGGTTTGGAACCCGTGTACTGGTCAAACTAGGTGGATCGAACCCAATAATC 412
Query 527 GTTGCTACTACTATGCTTTTGGATCCTACTTGGACAAATCCTACGGTAATAGCTACAAAA 586
||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||
Sbjct 413 GTTGCTACTACTATGCTTTGGGATCCTACCAAGACAAATCCTACAGTAATAGCTACAAAA 472
Query 587 TATTGAGCTATAGTGGTTATGGCTACGAGAACCAAGAACTCGCAATCTATGAGATTAACT 646
||||| |||||||||||||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 473 TATTGGGCTATAGTGGTTATGGCTTCAAGAACCAAGAACTCGCAATCTATGAAATTAACT 532
Query 647 CTCAATCATGGAGGTTTCTTGATGTCACTCGTGACTGCATCCTCGAAAGATATACTGATT 706
|||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 533 CTCATTCATGGAGGTTTCTTGATGTCACTTGTGACTGCATCCTCCAAAGATATACTGATT 592
Query 707 ACGGTGTGTCTTTGAAGGGACATACTTACTGGTTTGCGTCAGATGAGAAAGAGAAAAATC 766
|||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 593 ACGGCGTGTCTTTAAAGGGAAATACTTACTGGTTTGCGTCAGATGAGAAAGAGAAAAATC 652
Query 767 TCAGCGTATTTCTAGTCAGTTTTGATTATACAACTGAAAGATTTAGACGTCTACGTCTCC 826
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 653 ACAACGTATTTCTGGTCAGTTTTGATTATACAACTGAAAGATTTAGACGTCTACGTCTTC 712
Query 827 CGTATCAGTGCCCTGATTATAACACTGCGTCTTTATCCGTTGTTAGAGAAGAGAAACTTG 886
|||||||||||||||||||||| ||||||||| ||||||||||||||||||| || |||
Sbjct 713 CGTATCAGTGCCCTGATTATAAAACTGCGTCTCTATCCGTTGTTAGAGAAGATAAGCTTT 772
Query 887 CGGTGTTGTTACAACGCGAAAATACATCAAGGACAGAGATATGGGTGACAAGTAGGATTG 946
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 773 CGGTCTTGTTACAGCGCGATAATACATCAAGGACAGAGATATGGGTGACAAGTAAGATTG 832
Query 947 GTGAGACCAAAGTGGTGTCGTGGAGCATGGTCTTAGCAGTGGATTTCCCGTCCGAACTAT 1006
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GTGAGACCAAAGTGGTGTCTTGGAGCATGGTCTTAGCAGTGGATTTCCCGTCCGAACTAT 892
Query 1007 TCATTTTGT-CTGGCATAAGTTTCTTGGTCGATGCGGAGAAAAAATTCGTCGTAT 1060
| |||| || ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 893 TTATTT-GTTCTGGCATAAGTTTCTTGGTCGATGCCGAGAAAAAAGTCGTCGTAT 946
> Ahg928760 jgi|Araly1|928760|scaffold_301217.1
Length=1307
Score = 595 bits (322), Expect = 2e-169
Identities = 758/957 (79%), Gaps = 76/957 (8%)
Strand=Plus/Plus
Query 345 ATCTGTAGAGGCCACATGTG-AACTTAGCCTAATCGACTCTTTTTCTAGTTTTGAAGATA 403
|||||||||| |||| ||| || ||||||||||||||||| || |||||||||| ||
Sbjct 353 ATCTGTAGAGATCACAGGTGCAA-TTAGCCTAATCGACTCTCGTTATAGTTTTGAATATC 411
Query 404 AATTCGAGATTTCTCAAGTCTTTCACTGTGACGGCTTATTGTTATGCACCGACGCAGACA 463
||||||| ||| | |||||||||||||||| |||||||| |||||||| ||| | ||
Sbjct 412 AATTCGATATTGATAAAGTCTTTCACTGTGATGGCTTATTACTATGCACCAACGTATACC 471
Query 464 ACACTAGAATCGTGGTTTGGAACCCGTGTACTGGTAAAACTAGGTGGATTGAACCCAATA 523
|||||||||||||||||||||||||||| |||||| |||| || || ||| |||||| ||
Sbjct 472 ACACTAGAATCGTGGTTTGGAACCCGTGCACTGGTCAAACCAGATGTATTCAACCCA-TA 530
Query 524 -ATCG-TTGCTACTACTATGCTTTTGGATCCTACTTGGAC-A-AA-TCCTACGGTAATAG 578
|| | |||| |||||| |||| ||||||||||| ||| | || ||| ||||||||||
Sbjct 531 GAT-GATTGCGACTACTGTGCTCTTGGATCCTACCAAGACCACAAATCCCACGGTAATAG 589
Query 579 CTACAAAATATTGAGCTATAG---TGG-T-T--A--T---GGCTACGAGAACCAAGAACT 626
||||||||||||||||| || ||| | | | | ||||||| | ||||||| |
Sbjct 590 CTACAAAATATTGAGCTGTAACAATGGGTCTTTAACTAAAGGCTACGCCAGCCAAGAATT 649
Query 627 CGCAATCTATGAGATTAACTCT-----C---AAT-CATGGAGGTTTCTTGATGTCA-CTC 676
|||||| |||||||||||||| | ||| |||||||| || |||||| || |||
Sbjct 650 TGCAATCCATGAGATTAACTCTAATGACTCTAATTCATGGAGGATTATTGATG-CAACTC 708
Query 677 GTGACTGC-ATCCTCGAAAGATATACTGATTACGGTGTGTCTTTGAAGGGACATACTTAC 735
|| | ||| | | | ||| ||||||||||||| ||||||||||| ||| | |||||
Sbjct 709 GTAAGTGCCA-CGT--AAACC-ATACTGATTACGGCGTGTCTTTGAAAGGAAACACTTAT 764
Query 736 TGGTTTGCGTCAGATGA-GAA-AGAGAAAAATCTCAGCGTATTTCTAGTCAGTTTTGATT 793
|||||||| |||||||| ||| | |||| | || |||||||| || ||||||||||||
Sbjct 765 TGGTTTGCTTCAGATGAAGAACA-AGAACAG-CTTGGCGTATTTTTACTCAGTTTTGATT 822
Query 794 ATACAACTGAAAGATTTAGACGTCTACGTCTCCCGTATCAGTGCCCTGATTAT--AACAC 851
||||||| |||||||||||||||| | |||| ||||||||||| ||| ||| | || ||
Sbjct 823 ATACAACCGAAAGATTTAGACGTCAATGTCTTCCGTATCAGTGTCCT-ATTTTCGAA-AC 880
Query 852 TGCGTCTTTATCCGTTGTTAGAGAAGAGAAACTTGCGGTGTTGTTACAACGCGAAAATAC 911
|| |||| |||| ||| ||||||| ||||| ||| |||||||||| |||||||||| ||
Sbjct 881 TGTGTCTCTATCAGTTATTAGAGACGAGAAGCTTTCGGTGTTGTTGCAACGCGAAAGTAG 940
Query 912 ATCAAGGACAGAGATATGGGTGACAAGTAGGATTGGTGAGACCAAAGTGGTGTCGTGGAG 971
||||| | |||||||||| |||||| || ||||||||||||||||||||| ||||||||
Sbjct 941 ATCAAACATAGAGATATGGCTGACAAATAAGATTGGTGAGACCAAAGTGGTATCGTGGAG 1000
Query 972 CATGGTCTTAG-C---AG--TGGATTTCCCGTCCGAACTATTCATTT-TGTC-TGGCATA 1023
|||| ||||| | | | ||| |||| |||||| | || || | || ||| |||
Sbjct 1001 CATGCTCTTACTCTTTACACTAGATGTCCCCTCCGAATT-TT-ATATATGGAATGGAATA 1058
Query 1024 AGTTTCTTGGTCGATGCGGAGAAAAAATTCGTCGTATGTTGTGATAA-TTACTTCGG-AG 1081
|||||||||||||||| |||||| ||| || |||| |||||||| || || | | || |
Sbjct 1059 AGTTTCTTGGTCGATGAGGAGAAGAAAGTCATCGTGTGTTGTGACAAATT-CAT-GGTA- 1115
Query 1082 AGGATGAAT-ACGATACCAAAAACTTGGT-TCACATTGTTGGAGAGAACAACAAAGTGAG 1139
| ||||| | || |||||||||||| | ||||| |||||||| |||| ||||| |
Sbjct 1116 AC--TGAATTA-GACGGCAAAAACTTGGTCT-ACATTATTGGAGAGGACAATAAAGTCAC 1171
Query 1140 AGAAGTTAATTTCGGAGTA-TCCGAATCATCTTGGCCATTTTTGTTTAATTATGTTCCAA 1198
| ||||| |||| ||| || || |||| | | |||||||||||||||| ||||||||||
Sbjct 1172 ACAAGTTGATTTTGGATTAGTC-GAATG-T-T-GGCCATTTTTGTTTAACTATGTTCCAA 1227
Query 1199 GTTTGATTCAAATCTGGGAAGGTGTA---GGAGGCAAAAGAAAGAGAG-TCGAATAA 1251
|| ||| ||||||| ||||| || |||||||||||||| |||| | ||||||
Sbjct 1228 GTATGACTCAAATCCACCAAGGTCTACTAGGAGGCAAAAGAAAAAGAGAT-GAATAA 1283
> Ahg318651 jgi|Araly1|318651|fgenesh1_pm.C_scaffold_3001667
Length=2421
Score = 95.3 bits (51), Expect = 1e-18
Identities = 107/133 (80%), Gaps = 7/133 (5%)
Strand=Plus/Plus
Query 865 GTTGTTAGAGAAGAGAAACTTGCGGTGTTGTTACAACGCGAAAATACAT-CAAGGACAGA 923
|||||||||||||| |||||| | ||||| || || || || || | | ||| ||| ||
Sbjct 2035 GTTGTTAGAGAAGATAAACTTTCTGTGTTATTGCAGCGAGATAACAGTTCCAA-GACTGA 2093
Query 924 GATATGGGTGACAAG-TAGGATTGGTGAG---ACCAAAGTGGTGTCGTGGAGCATGGTCT 979
|||||||||||| | || ||||| |||| ||| |||||||||| ||||||| |||||
Sbjct 2094 GATATGGGTGAC-TGATAAGATTGATGAGACTACCGAAGTGGTGTCTTGGAGCAAGGTCT 2152
Query 980 TAGCAGTGGATTT 992
||||| |||||||
Sbjct 2153 TAGCATTGGATTT 2165
> Ahg342694 jgi|Araly1|342694|fgenesh1_pg.C_scaffold_3002457
Length=564
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 419 AAGTCTTTCACTGTGACGGCTTATTGTTATGCA 451
|||||||||||||||||||||||||||||||||
Sbjct 305 AAGTCTTTCACTGTGACGGCTTATTGTTATGCA 337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5