BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47310.1
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494250 jgi|Araly1|494250|fgenesh2_kg.8__66__AT5G47310.1 1533 0.0
Ahg493128 jgi|Araly1|493128|fgenesh2_kg.7__2561__AT4G17486.1 523 1e-147
> Ahg494250 jgi|Araly1|494250|fgenesh2_kg.8__66__AT5G47310.1
Length=1066
Score = 1533 bits (830), Expect = 0.0
Identities = 996/1071 (93%), Gaps = 31/1071 (3%)
Strand=Plus/Plus
Query 119 TTTTTGCAGAGATTTT---AGGAGGAAC---ATGATTGTTTGAATTGGGAGAGACA---- 168
|||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 3 TTTTTGCAGAGATTTTAGGAGGAGGAACATGATGATTGTTTGAATTGGGAGAGACAGTTC 62
Query 169 TTGGTTCGTGTAAAATGCGGGTGCTTGGTTTGAGCTCAAGCTTATGCTCTGGTGAGGATA 228
|| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |
Sbjct 63 TTCGTTCGTGTAAAATGCGGGTACTTGGTTTGAGCTCAAGCTTATGTTCAGGTGAGGACA 122
Query 229 AGGAAGAAGAAGAGATTAA-TGGAGAAGGCTCTCTCACGCCTGTTTATCTCAACGTCTAT 287
||||||||||||||| || ||||||||||| |||||| |||||||||||||||||||||
Sbjct 123 AGGAAGAAGAAGAGA-CAACTGGAGAAGGCTGTCTCACTCCTGTTTATCTCAACGTCTAT 181
Query 288 GATCTAACTCCTGTCAACAATTATCTCTATTGGTTCGGCCTTGGCATATTTCACTCTGGC 347
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 182 GATCTGACTCCTGTCAACAATTATCTCTATTGGTTCGGTCTTGGCATATTTCACTCTGGC 241
Query 348 ATTGAGGCTCATGGTTTCGAATATGGATATGGAGCTCATGAGTATTCGAGCAGTGGGGTA 407
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 242 ATTGAGGCTCATGGTTTCGAATATGGATATGGGGCTCATGAGTATTCGAGCAGTGGGGTA 301
Query 408 TTTGAGGTTGAACCTAGGAGCTGTCCAGGTTTCATCTTTAGGCGCTCAGTTTTGTTGGGA 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TTTGAGGTTGAACCTAGGAGCTGTCCAGGTTTCATCTTTAGGCGCTCAGTTTTGTTGGGA 361
Query 468 ACCACCAGCATGTCTCGCTCTGATTTCCGCTCCTTCATGGAGAAGCTTTCGAGAAAGTAT 527
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 362 ACCACCAGCATGTCTCGCTCAGATTTCCGCTCTTTCATGGAGAAGCTTTCGAGAAAATAT 421
Query 528 CATGGGGACACATACCATTTGATTGCCAAAAACTGTAACCATTTCACTGAAGAAGTATGC 587
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 422 CATGGGGACACATACCATTTAATCGCCAAGAACTGTAACCATTTCACTGAAGAAGTATGC 481
Query 588 TTGCAGGTAACAGGAAAGCCTATTCCTGGATGGATTAATAGGATGGCTCGAGTTGGTTCG 647
|||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||
Sbjct 482 TTGCAGGTAACAGGAAAGCCTATTCCCGGATGGATTAATCGGATGGCCCGAGTAGGTTCT 541
Query 648 TTCTGTAACTGTATCCTTCCAGAAAGCATACAGCTCTCATCGGTTAATCATCCTGAAGCC 707
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 542 TTCTGTAACTGTATCCTTCCAGAAAGCATACAGCTCTCATCTGTTAATCATCCCGAAGCC 601
Query 708 CTCGAGTTCTCTGATGATAACGATGGATCAGAAGAATCAGTTGCATCTTCTGTGTCATAC 767
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 602 CTCGAGTTCTCTGATGATAACGATGGATCAGAAGAATCAGTTGCATCTTCCGTATCATAT 661
Query 768 GAAACAGATGGAGAAGGATCGGATCATCATCTCATAACAGCACCAAACAGCGATATTGCG 827
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 662 GAAACAGATGGAGAAGGATCGGATCATCATCTCATAACAGCACCAAACAGCGACATTGCG 721
Query 828 TATCTACAGGACAGACCAGTGAGACTTGCCCGTGAGCTCCTCCAAGAACCAACCGATGAT 887
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 722 TATCTACAAGACAGACCAGTGAGACTTGCCCGTGAACTCCTCCAAGAACCAACCGATGAT 781
Query 888 ACATCTCCGCAGTACTTGTTGAAGCGGTCCTGATCATCACAAGCATCAACAACTTGTGTT 947
||||||||| ||||||||||||||| || |||||||||||| |||||| ||||||||||
Sbjct 782 GCATCTCCGCCGTACTTGTTGAAGCGTTCTTGATCATCACAATCATCAAGAACTTGTGTT 841
Query 948 GTCTGTAAACAG---TGAGGCAATGGGTCCATATATTGAGTATTCTTTGGATCTATAAGT 1004
|||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| |
Sbjct 842 GTCTGTAAACAGAAGTGAGGCAATGGGTCCAT-T-TTGAGTATTCTTTAGATCTATAAAT 899
Query 1005 GTaaaaaaaGATTTAAGATTTAAATCAGAACCCATCTGAGATGTTGGATTGT--AGTGTA 1062
||||||||||||| || ||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 900 GTAAAAAAAGATT-AA--TTTAAATGAGAACCCATCTAAGATGTTGGATTGTGTAGTGTA 956
Query 1063 AGATTTAGAGACAAATGGTGTGAC-------A-AAAATTGTGCCTTCTTCTTCTCCCAAT 1114
||||| ||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 957 AGATT-AGAGACAAATGGTGTGAATTTGTTGACAAAATTGTGCCTTCTTCTTCTCTCAAT 1015
Query 1115 GTGAGTTCACATTTCAGTGTCATAATTCGTAAGATTTGCGAGACTAATAAT 1165
||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1016 GTGAGTTCACATTTCAGAGTCATAATTCGTAAGATTTGCGAGACTACTAAT 1066
> Ahg493128 jgi|Araly1|493128|fgenesh2_kg.7__2561__AT4G17486.1
Length=1019
Score = 523 bits (283), Expect = 1e-147
Identities = 559/688 (81%), Gaps = 36/688 (5%)
Strand=Plus/Plus
Query 176 GTGTAAAATGCGGGTGCTTGGTTTGAGCTCAAGCTTATGC-TCTGGTGAGGATAAGGAAG 234
|||||||||| |||||| | ||||||||||||| || | || |||| || ||| |
Sbjct 115 GTGTAAAATGTGGGTGCCTACATTGAGCTCAAGCTCAT-CTTCAAGTGATGA-GAGG--G 170
Query 235 AAGAAGAGATTAATGGAGAAGGCTCTCTCACGCCTGTTTATCTCAACGTCTATGATCTAA 294
||| |||| | |||||||| | || ||||| ||||||||||| |||||||||||||
Sbjct 171 AAG-AGAG--CAGTGGAGAAGCCGGGCTTACGCCGGTTTATCTCAATGTCTATGATCTAA 227
Query 295 CTCCTGTCAACAATTATCTCTATTGGTTCGGCCTTGGCATATTTCACTCTGGCATTGAGG 354
| |||||||||||||| || |||||||| || |||||||||| || ||||| |||||||
Sbjct 228 CGCCTGTCAACAATTACCTTTATTGGTTTGGGATTGGCATATTCCATTCTGGAATTGAGG 287
Query 355 CTCATGGTTTCGAATATGGATATGGAGCTCATGAGTATTCGAGC-AGTGGGGTATTTGAG 413
||||| ||| |||||| | ||||||||||| ||||| || | | |||||||||| ||||
Sbjct 288 CTCATAATTTGGAATATTGCTATGGAGCTCACGAGTA-TCCAACAAGTGGGGTATATGAG 346
Query 414 GTTGAACCTAGGAGCTGTCCAGGTTTCATCTTTAGGCGCTCAGTTTTGTTGGGAACCACC 473
|| |||||||||||||||||||||||||||||||| || || ||||| |||||||| |||
Sbjct 347 GTGGAACCTAGGAGCTGTCCAGGTTTCATCTTTAGACGGTCGGTTTTATTGGGAACTACC 406
Query 474 AGCATGTCTCGCTCTGATTTCCGCTCCTTCATGGAGAAGCTTTCGAGAAAGTATCATGGG 533
||||||||||| || ||||||||||| | ||||||||||||||| ||||| || |||||
Sbjct 407 AGCATGTCTCGTTCAGATTTCCGCTCATACATGGAGAAGCTTTCAAGAAAATACCATGGT 466
Query 534 GACACATACCATTTGATTGCCAAAAACTGTAACCATTTCACTGAAGAAGTATGCTTGCAG 593
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 467 GACACTTACCATTTGATTGCCAAGAACTGTAACCATTTTACTGAAGAAGTATGCTTGCAG 526
Query 594 GTAACAGGAAAGCCTATTCCTGGATGGATTAATAGGATGGCTCGAGTTGGTTCGTTCTGT 653
| ||||||||||||||||| |||||||||||| || | || || || ||||||||||||
Sbjct 527 CTTACAGGAAAGCCTATTCCAGGATGGATTAATCGGCTAGCCCGTGTAGGTTCGTTCTGT 586
Query 654 AACTGTATCCTTCCAGAAAGCATACAGCTCT-CATCGGTTAAT---CATCCTGAA-GCCC 708
|| ||| | || ||||||||||| ||||| | || | |||| | | ||| ||| |||
Sbjct 587 AATTGTCTTCTGCCAGAAAGCATTCAGCT-TACAGCTGTTAGTGTTCTTCCCGAACGCCT 645
Query 709 TCGAGTTCTCTGATGATAACGATGGA-TCAGAAGAATCAGTTGCATCTTCTGTGTCATAC 767
| || ||||| ||||| || ||| ||| || |||| ||||||||||||||
Sbjct 646 T-GAATTCTCCGATGAG---GA-GGAATCA-AAC--TCAGAGGCATCTTCTGTGTC---- 693
Query 768 GAAACAGATGGAGAAGGATCGGATCATCATCTCATAACA-GCACCAAACAGCGATATTGC 826
| |||| ||||||||| || || |||||||||| | ||| || |||| || ||||
Sbjct 694 G-----GATGAAGAAGGATCAGAGCAGCATCTCATAA-ATGCAGCAGACAGAGAGATTGT 747
Query 827 GTATCTACAGGACAGACCAGTGAGACTT 854
||||||||| ||| ||||||| |||||
Sbjct 748 GTATCTACAAAACAAACCAGTGCGACTT 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43536371214
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5