BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47330.1
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494249 jgi|Araly1|494249|fgenesh2_kg.8__65__AT5G47330.1 1661 0.0
Ahg915309 jgi|Araly1|915309|Al_scaffold_0008_60 1125 0.0
Ahg356260 jgi|Araly1|356260|fgenesh1_pg.C_scaffold_8000047 953 0.0
Ahg330701 jgi|Araly1|330701|fgenesh1_pm.C_scaffold_8000044 918 0.0
Ahg915342 jgi|Araly1|915342|Al_scaffold_0008_93 649 0.0
Ahg948213 jgi|Araly1|948213|scaffold_800100.1 346 2e-94
> Ahg494249 jgi|Araly1|494249|fgenesh2_kg.8__65__AT5G47330.1
Length=1110
Score = 1661 bits (899), Expect = 0.0
Identities = 1048/1117 (94%), Gaps = 22/1117 (2%)
Strand=Plus/Plus
Query 12 aaaaaagaaaaagaaaaaa-aCTATAAACATAAACGCCAATCGCAACTTTCT-TGTCTT- 68
||||||||||||||||||| || |||| ||||| ||| |||||||||||| | || ||
Sbjct 1 AAAAAAGAAAAAGAAAAAACAC-ATAACCATAATCGCTAATCGCAACTTT-TGCGT-TTG 57
Query 69 TCAATGGGAGAGAAAGGTTTGAAGCGGTCTGGTGTTGCGGTGGTGGTTGCATTACTAGCC 128
||||||||| | |||||||||||||||||| |||||||||||| |||||||||| |||||
Sbjct 58 TCAATGGGAAATAAAGGTTTGAAGCGGTCTTGTGTTGCGGTGGCGGTTGCATTATTAGCC 117
Query 129 ATGGTTCATGTCTCTGTTTCAGTTCCGTTCATAATGCTTCATGGGATCTCAGCTCAATGT 188
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 118 ATGGTTCATGTCTCTGTTTCAGTTCCGTTCATAATGCTTCATGGAATCTCAGCTCAATGT 177
Query 189 TCTAATGCTAGGGATGCTAACTTCACACAGCTTCTCACTAACCTCTCTGGCTCTCCTGGC 248
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCTAATGCTAGAGATGCTAACTTCACACAGCTTCTCACTAACCTCTCTGGCTCTCCTGGC 237
Query 249 TTTTGCTTAGAAATTGGAAATGGAGTTGCCGATTCATGGTTAATGCCGCTTACACGACAA 308
|||||||||||||||||||||||||| | |||||||||||||||||| ||||| || |||
Sbjct 238 TTTTGCTTAGAAATTGGAAATGGAGTAGGCGATTCATGGTTAATGCCACTTACGCGGCAA 297
Query 309 GCGGAAATAGCGTGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAAGGATACAACATT 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCGGAAATAGCGTGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAAGGATACAACATT 357
Query 369 GTTGGAAGATCTCAGGGGAACCTAGTGGCTCGAGGCTTGATCGAGTTCTGTGACGGTGGC 428
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 358 GTTGGAAGATCTCAGGGGAACCTAGTGGCTCGAGGCTTAATTGAGTTCTGCGACGGTGGC 417
Query 429 CCTCCGGTTTACAACTATATATCCTTGGCCGGTCCTCATGCTGGCATCTCCTCTGTTCCT 488
||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||
Sbjct 418 CCTCCGGTTTACAACTACATATCCTTGGCTGGTCCTCATGCTGGAATATCCTCTGTTCCT 477
Query 489 ATGTGTGGTTCTGGTTTATTCTGTAAGTTAGCAGATGAGCTAATCAAGGGAGATATCTAT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATGTGTGGTTCTGGTTTATTCTGTAAGTTAGCAGATGAGCTAATCAAGGGAGATATCTAT 537
Query 549 AGCGACTTCATTCAAGATCATCTTGCTCCTAGTGGTTATCTCAAAATTCCTACTGATATG 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGCGACTTCATTCAAGATCATCTTGCTCCTAGTGGTTATCTCAAAATTCCTACTGATATG 597
Query 609 ACAAAGTACTTGGGAAGCTCTAAGTATTTACCTAAGCTTAACAATGAGATACCAGACCAA 668
| ||||||||||| || |||||||||| |||||||||||||||||||||||||| | |||
Sbjct 598 AAAAAGTACTTGGAAAACTCTAAGTATCTACCTAAGCTTAACAATGAGATACCAAATCAA 657
Query 669 AGAAAC-CAAACTTACAAAGACCGTTTCACCAGTTTACATAACTTGGTTCTTATCAAGTT 727
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAAACTCAA-CTTACAAAGACCGTTTCACCAGTTTACATAACTTGGTTCTTATCAAGTT 716
Query 728 TCAGGGCGACAAGGTTATAGTTCCAAAAGATTCATCTTGGTTCGGGTTTTATCCGGATGG 787
||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 TCAGGACGATAAGGTTATTGTTCCAAAAGATTCATCGTGGTTCGGGTTTTATCCGGATGG 776
Query 788 TGAATTCGAACCTCTTCTCTCTGCTCAACAGACAAAGCTCTATACAGAGGATTGGATCGG 847
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 777 TGAATTTGAACATCTTCTCTCTGCTCAACAGACAAAGCTCTATACAGAGGATTGGATAGG 836
Query 848 TCTGAAAACATTGGATGATGCGGGAAAAGTGAAGTTTGTGAGTGTAGCCGGTGAACATAT 907
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCTGAAAACATTGGATGATGCTGGAAAAGTGAAGTTTGTGAGTGTAGCCGGTGAACATAT 896
Query 908 CAGAATGGTAGATGAAGATGTCGTCAAACACGTTGTACCTTATCTCCAGGACCAACCGTC 967
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 897 CAGAATGGCAGATGAAGATGTCGTCAAACATGTTGTACCTTATCTCCAGGACCAACCGTC 956
Query 968 TTCGGTGCAAAG-CTTCAACCGCAAGACGAAGCAGCCCTTGCATGCTTAAAAATAGCAAA 1026
|||||||||||| || ||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 957 TTCGGTGCAAAGACT-CAACCGCAAGACGAAGCAGCCCTTGAATCCTTAAAAAGAGCAAA 1015
Query 1027 TACCACAATAGTTAT---ACTTATTCATGCAATATATGTCGAAAAA-GCTTAGTGATGAT 1082
|||| |||||||||| ||||||||||||||| ||| ||||||| ||||||| |||||
Sbjct 1016 TACCTCAATAGTTATTTTACTTATTCATGCAATTTAT--CGAAAAAAGCTTAGTAATGAT 1073
Query 1083 TTTGTAGAA-TC----C-TTATTCTTATAGAAATATA 1113
||||||||| | | ||||||||||| |||||||
Sbjct 1074 TTTGTAGAACTAGAATCATTATTCTTATATAAATATA 1110
> Ahg915309 jgi|Araly1|915309|Al_scaffold_0008_60
Length=954
Score = 1125 bits (609), Expect = 0.0
Identities = 844/954 (88%), Gaps = 30/954 (3%)
Strand=Plus/Plus
Query 78 GAGAAAGGTTTGAAGCGGTCTGGTGTTGCGGTGGTGGTTGCATTAC-TAGCCATGGTTCA 136
||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 4 GAGAAAGGTTTGAAGCGGTCTGGTGTTATGGTGGTGGTTGCATT-CTTAGCCATGGTTCA 62
Query 137 TGTCTCTGTTTCAGTTCCGTTCATAATGCTTCATGGGATCTCAGCTCAATGTTCTAATGC 196
||||||| | |||||||||||||||||||||||||| ||| || |||| |||||| ||||
Sbjct 63 TGTCTCTCTATCAGTTCCGTTCATAATGCTTCATGGAATCGCATCTCATTGTTCTGATGC 122
Query 197 TAGGGATGCTAACTTCACACAGCTTCTCACTAACCTCTCTGGCTCTCCTGGCTTTTGCTT 256
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 123 TACAAATGCTAACTTCACACAGCTTCTCACTAACCTCTCTGGCTCTCCTGGCTTTTGCGT 182
Query 257 AGAAATTGGAAATGGAGTTGCCGA-TTCATGGTTAATGCCGCTTACACGACAAGCGGAAA 315
|||||||||||||||||| | | ||||| ||| |||| ||||||| |||||| ||||
Sbjct 183 AGAAATTGGAAATGGAGTAG-TAACTTCATTGTTCTTGCCACTTACACAACAAGCAGAAA 241
Query 316 TAGCGTGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAAGGATACAACATTGTTGGAA 375
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TAGCATGTGAGAATGTGAAGCAAATGAAAGAGTTGAGTCAAGGATACAACATTGTTGGAA 301
Query 376 GATCTCAGGGGAACCTAGTGGCTCGAGGCTTGATCGAGTTCTGTGACGGTGGCCCTCCGG 435
||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |||||||
Sbjct 302 GATCTCAGGGGAACCTAGTGGCTAGAGGCTTGATCGAGTTCTGCGACGATGGACCTCCGG 361
Query 436 TTTACAACTATATATCCTTGGCCGGTCCTCATGCTGGCATCTCCTCT-GT--T-C--CTA 489
||||||||||||||||||| || ||||||||||||||||| || ||| | | | |||
Sbjct 362 TTTACAACTATATATCCTTAGCTGGTCCTCATGCTGGCATTTCTTCTATTCCTCCGGCTA 421
Query 490 TGTGTGGTTCTG--GT-TTAT---TC-TGTAAGTTAGCAGATGAGCTAATCAAGGGAGAT 542
| ||||||| || || || | |||||| | |||||| | |||||||||| |
Sbjct 422 TTTGTGGTT-TGAAGTCCGATCCAGCATGTAAGAAATTTGATGAGTTGATCAAGGGAGCT 480
Query 543 ATCTATAGCGACTTCATTCAAGATCATCTTGCTCCTAGTGGTTATCT-CAAAATTCCTAC 601
|||||||||| ||||||||||||||||||||||||||||||||| | |||||| ||||
Sbjct 481 CTCTATAGCGAGTTCATTCAAGATCATCTTGCTCCTAGTGGTTAT-TACAAAATCCCTAA 539
Query 602 TGATATGACAA--AGTACTTGGGAAGCTCTAAGTATTTACCTAAGCTTAACAATGAGATA 659
|||||| | || ||||||||| || |||||||||| |||||||||||||||||||||||
Sbjct 540 TGATAT-A-AATGAGTACTTGGAAAACTCTAAGTATCTACCTAAGCTTAACAATGAGATA 597
Query 660 CCAGACCAAAGAAACCAAACTTACAAAGACCGTTTCACCAGTTTACATAACTTGGTTCTT 719
|||||||||||||||||||||||||||||||||||||||| |||||| ||| | ||||||
Sbjct 598 CCAGACCAAAGAAACCAAACTTACAAAGACCGTTTCACCATTTTACAGAACCTAGTTCTT 657
Query 720 ATCAAGTTTCAGGGCGACAAGGTTAT-AGTTCCAAAAGATTCATCTTGGTTCGGGTTTTA 778
|||||||||||| ||| || |||| | | ||||| |||||| ||||||| ||||||||
Sbjct 658 GTCAAGTTTCAGGACGATGAGATTATTACT-CCAAATGATTCAACTTGGTTTGGGTTTTA 716
Query 779 TCCGGATGGTGAATTCGAACCTCTTCTCTCTGCTCAAC-AGACAAAGCTCTATACAGAGG 837
|||||| |||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct 717 TCCGGAGGGTGAATTCGAACCTCTTCTCTCTCCT-AACCAGACAAAGCTCTATACAGAGG 775
Query 838 ATTGGATCGGTCTGAAAACATTGGATGATGCGGGAAAAGTGAAGTTTGTGAGTGTAGCCG 897
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 776 ATTGGATCGGTCTGAAAACATTGGATGATGCTGGAAAAGTGAAGTTTGTGAGTGTAGCCG 835
Query 898 GTGAACATATCAGA-ATGGTAGATGAAGATGTCGTCAAACACGTTGTACCTTATCTCCAG 956
||| ||| ||| | |||| ||| |||||||||||||||| ||||||||||||||||||
Sbjct 836 GTGGACACCTCA-ACATGGCGGATCAAGATGTCGTCAAACATGTTGTACCTTATCTCCAG 894
Query 957 GACCAACCGTCTTCGGTGCAAAGCTTCAACCGCAAGACGAAGCAGCCCTTGCAT 1010
||||||||||||| || |||||||||||||||||||| ||| |||||||||||
Sbjct 895 AACCAACCGTCTTCCGTACAAAGCTTCAACCGCAAGACCAAGGAGCCCTTGCAT 948
> Ahg356260 jgi|Araly1|356260|fgenesh1_pg.C_scaffold_8000047
Length=942
Score = 953 bits (516), Expect = 0.0
Identities = 813/954 (85%), Gaps = 30/954 (3%)
Strand=Plus/Plus
Query 78 GAGAAAGGTTTGAAGCGGTCTGGTGTTGCGGTGGTGGTTGCATTAC-TAGCCATGGTTCA 136
||||||||||||||||||||| ||||| ||||||||||||||| | |||| ||||||||
Sbjct 4 GAGAAAGGTTTGAAGCGGTCTTGTGTTATGGTGGTGGTTGCATT-CTTAGCTATGGTTCA 62
Query 137 TGTCTCTGTTTCAGTTCCGTTCATAATGCTTCATGGGATCTCAGCTCAATGTTCTAATGC 196
||||||| ||||||||||||||||||| ||||||| ||| | ||||||||||| ||||
Sbjct 63 TGTCTCTCTTTCAGTTCCGTTCATAATACTTCATGAAATCGGAACTCAATGTTCTGATGC 122
Query 197 TAGGGATGCTAACTTCACACAGCTTCTCACTAACCTCTCTGGCTCTCCTGGCTTTTGCTT 256
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TACAAATGCTAACTTCACACAGCTTCTCACTAACCTCTCTGGCTCTCCTGGCTTTTGCTT 182
Query 257 AGAAATTGGAAATGGAGTT-GCCGATTCATGGTTAATGCCGCTTACACGACAAGCGGAAA 315
||||||||| |||||| | || ||||||||||||||||| ||||| || ||||||||||
Sbjct 183 AGAAATTGGCAATGGAATAAGC-GATTCATGGTTAATGCCACTTACGCGGCAAGCGGAAA 241
Query 316 TAGCGTGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAAGGATACAACATTGTTGGAA 375
|||||||||| || |||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 242 TAGCGTGTGATAATGTGAAGCAAATGGAAGAGTTGAGTCTAGGATACAACATTGTTGGAA 301
Query 376 GATCTCAGGGGAACCTAGTGGCTCGAGGCTTGATCGAGTTCTGTGACGGTGGCCCTCCGG 435
|| ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 302 GAGCTCAGGGGAACTTAGTGGCTCGAGGCTTGATCGAGTTCTGCGACGGTGGGCCTCCTG 361
Query 436 TTTACAACTATATATCCTTGGCCGGTCCTCATGCTGGCATCTCCTCTGTTCCTATGTGTG 495
|||||||||||||||||||||| |||||||||||||||||| || || ||||| ||||
Sbjct 362 TTTACAACTATATATCCTTGGCTGGTCCTCATGCTGGCATCGCCGCTTTTCCTCCGTGTA 421
Query 496 GTTCTGGTTT-ATTCTGTAAGTTAGCAGATGAGCTAATCAAGGGAGATATCTATAGCGAC 554
||||||| ||| ||||| || || ||||| | ||||| |||||| |||||||||||
Sbjct 422 ATTCTGGTGGCATT-TGTAACATAACAAATGAGATTATCAATGGAGATGTCTATAGCGAC 480
Query 555 TTCATTCAAGATCATCTTGCTCCTAGTGGTTATCT-CAAAATTCCT-ACTGATATGACAA 612
|| ||||||| |||||||||||||||||||| | ||||| ||| | | || |||||
Sbjct 481 TTTGCTCAAGATAATCTTGCTCCTAGTGGTTAT-TACAAAAACCCTCA-TAATGTGACAG 538
Query 613 AGTACTTGGGAAGCTC-TAAGTATTTACCTAAGCTTAACAATGAGATACCAGACCAAAGA 671
||||| || ||| | ||||||| ||||||||||||||||||||| ||| |||||||||
Sbjct 539 AGTACCTGA-AAGGTTGTAAGTATCTACCTAAGCTTAACAATGAGAGACCGGACCAAAGA 597
Query 672 AACCAAACTTACAAAGACCGTTTCACCAGTTTACATAA-CTTGGTTCTTATCAAGTTTCA 730
||||||||||||||||||||||||||||||||||| || || |||| || || ||||||
Sbjct 598 AACCAAACTTACAAAGACCGTTTCACCAGTTTACAGAAGCT-GGTTTTTGTCCTGTTTCA 656
Query 731 GGGCGACAAGGTTATAGTTCCAAAAGATTCATCTTGGTTCGGGTTTTATCCGGATGGTGA 790
| ||| | |||||| || |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 657 GAACGATACGGTTATTGTCCCAAAAGAGTCATCTTGGTTCGGGTTTTATCCAGATGGTGA 716
Query 791 ATTCGAAC-C-TCTTCTCTCTGC-TCAACAGACAAAGCTCTATACAGAGGATTGGATCGG 847
|| ||| | | ||||| ||| || |||||||||||||||| |||||||||||| ||
Sbjct 717 CTT--AACACATGTTCTCCCTGTGTCC-CAGACAAAGCTCTATATAGAGGATTGGATAGG 773
Query 848 TCTGAAAACATTGGAT-GATGCGGGAAAAGTGAAGTTTGTGAGTGTAGCCGGTGAACA-T 905
||||||| |||||| | | ||| ||||||||| ||||||||| |||| || ||| || |
Sbjct 774 TCTGAAAGCATTGGCTCG-TGCTGGAAAAGTGCAGTTTGTGATTGTACCCAGTGCCCACT 832
Query 906 ATCAGAATGGTAGATGAAGATGTCGTCAAAC-ACGTTGTACCT-TATCTCCAGGACCAAC 963
| | ||| | ||||||||| ||||||| | |||| |||||| | |||| ||||||||
Sbjct 833 -TAATAATTGCGGATGAAGATCTCGTCAA-CTACGTCGTACCTCT-TCTCGAGGACCAAG 889
Query 964 CGTCTTCGGTGCAAAG-CTTCAACCGCAAGACGAAGCAGCCCTTGCATGCTTAA 1016
|||| | | | ||| || |||||||||||| ||| ||||||||||| |||||
Sbjct 890 TGTCTGCCGCACCAAGACT-CAACCGCAAGACCAAGGAGCCCTTGCATCCTTAA 942
> Ahg330701 jgi|Araly1|330701|fgenesh1_pm.C_scaffold_8000044
Length=951
Score = 918 bits (497), Expect = 0.0
Identities = 813/961 (85%), Gaps = 40/961 (4%)
Strand=Plus/Plus
Query 78 GAGAAAGGTTTGAAGCGGTCTGGTGTTGCGGTGGTGGTTGCATTAC-TAGCCATGGTTCA 136
||||| ||||||||||||||| ||||| ||||||||| ||||| | |||||||| ||||
Sbjct 4 GAGAAGGGTTTGAAGCGGTCTTGTGTTATGGTGGTGGTCGCATT-CTTAGCCATGTTTCA 62
Query 137 TGTCTCTGTTTCAGTTCCGTTCATAATGCTTCATGGGATCTCAGCTCAATGTTCTAATGC 196
|||||||||||||||||||||| |||| |||| || ||| | ||||||||||| |||
Sbjct 63 TGTCTCTGTTTCAGTTCCGTTCCTAATACTTCCTGAAATCGGAACTCAATGTTCTGATGA 122
Query 197 TAGGGATGCTAACTTCACACAGCTTCTCACTAACCTCTCTGGCTCTCCTGGCTTTTGCTT 256
|| | || |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 123 TACAGTTGGTAACTTCACACAGCTTCTCACTAACCTCTCAGGCTCTCCTGGCTTTTGCTT 182
Query 257 AG-AAAT-----TGGAAATGGAGTTGCCGATTCATGGTTAATGCCGCTTACACGACAAGC 310
|| || | |||||||| | | |||| |||||||||||| || ||||||| ||||||
Sbjct 183 AGTAATTGGCGATGGAAATGAAATAGCCGGTTCATGGTTAATACCACTTACACAACAAGC 242
Query 311 GGAAATAGCGTGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAAGGATACAACATTGT 370
||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 243 GGAGATAGCGTGTGAGAAGGTGAAGCAAATGGAAGAGTTGAGTCATGGATACAACATTGT 302
Query 371 TGGAAGATCTCAGGGGAACCTAGTGGCTCGAGGCTTGATCGAGTTCTGTGACGGTGGCCC 430
||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 303 TGGAAGAGCTCAGGGGAACCTAGTGGCTCGAGGCTTAATCGAATTCTGCGACGGTGGCCC 362
Query 431 TCCGGTTTACAACTATATATCCTTGGCCGGTCCTCATGCTGGCATCTCC-TCTGTTCCTA 489
||||||||||||||||||||||||||| |||||||||||||||||| || | | |||||
Sbjct 363 TCCGGTTTACAACTATATATCCTTGGCTGGTCCTCATGCTGGCATCGCCGT-TCTTCCTC 421
Query 490 TGTGTGGT---TCTGGTTTA-TTCTGTAAG-TTAGCAGATGAGCTAATCAAGGGAGATAT 544
|||| | |||| |||| || ||| | ||||| ||| | || ||| |||||| |
Sbjct 422 GGTGTACTACATCTGATTTACTT-TGT-GGCATAGCAAATGGGATAGGCAATGGAGATGT 479
Query 545 CTATAGCGACTTCATTCAAGATCA-TCTTGCTCCTAGTGGTTATCTCAAA-ATTCCTACT 602
|||||||||||| |||||||| | ||||||||||||||||||| ||||| | ||||
Sbjct 480 CTATAGCGACTTTGTTCAAGAT-AGTCTTGCTCCTAGTGGTTATTTCAAAGA-CCCTAAA 537
Query 603 GATATGACAAAGTACTTGGGAA-GCTCTAAGTATTTACCTAAGCTTAACAATGAGATACC 661
|| ||||| ||||| | | || | | ||||||| ||||||||||||||||||||| |||
Sbjct 538 AATGTGACAGAGTACCT-GAAAGGTTGTAAGTATCTACCTAAGCTTAACAATGAGAGACC 596
Query 662 AGACCAAAGAAACCAAACTTACAAAGACCGTTTCACCAGTTTACATAACTTGGTTCTTAT 721
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 597 AGACCAAAGAAACCAAACTTACAAAGACCGTTTCACCAGTTTACACAACCTGGTTCTTGT 656
Query 722 CAAGTTTCAGGGCGACAAGGTTATAGTTCCAAAAGATTCATCTTGGTTCGGGTTTTATCC 781
| ||||||| ||| | |||||| ||||||||||| |||||||||||||||||||||||
Sbjct 657 CCTGTTTCAGAACGATACGGTTATTGTTCCAAAAGAATCATCTTGGTTCGGGTTTTATCC 716
Query 782 GGATGGTGAATTCGAAC-C-TCTTCTCTCTGCTCAACA-GACAAAGCTCTATACAGAGGA 838
||||||||| || ||| | | ||||||||| | ||| |||||||||||||| ||||||
Sbjct 717 GGATGGTGACTT--AACACATGTTCTCTCTG-TGGACAAGACAAAGCTCTATATAGAGGA 773
Query 839 TTGGATCGGTCTGAAAACATTGGATGATGCGGGAAAAGTGAAGTTTGTGAGTGTAGCCGG 898
|||||| ||||||||| |||||| || ||| ||||||||| ||||||||| |||| ||||
Sbjct 774 TTGGATAGGTCTGAAAGCATTGGTTGTTGCTGGAAAAGTGCAGTTTGTGAATGTACCCGG 833
Query 899 TGAAC-A-TATCAGAATGG-TAGATGAAGATGTCGTCAAACACGTTGTACCT-TATCTCC 954
| ||| | | | | ||| | | ||||| ||| |||||||| |||| |||||| | |||||
Sbjct 834 T-AACCACT-TAATAATAGCT-GATGAGGATCTCGTCAAATACGTCGTACCTCT-TCTCC 889
Query 955 AGGACCAACCGTCTTCGGTGCAAAG-CTTCAACCGCAAGACGAAGCAGCCCTTGCATGCT 1013
||||||| | |||| | | | ||| || |||||||||||| ||| ||||||||||| ||
Sbjct 890 AGGACCAGCAGTCTGCCGCACCAAGACT-CAACCGCAAGACCAAGGAGCCCTTGCAT-CT 947
Query 1014 T 1014
|
Sbjct 948 T 948
> Ahg915342 jgi|Araly1|915342|Al_scaffold_0008_93
Length=915
Score = 649 bits (351), Expect = 0.0
Identities = 744/924 (81%), Gaps = 65/924 (7%)
Strand=Plus/Plus
Query 75 GGA-GAGAAAGGTTTG---AAGC-GGTCTGGTGTTGCGGTGGTGGTTGCATTACTAGC-C 128
||| |||||||||||| |||| | | ||| ||||||||||||| | || | | | |
Sbjct 3 GGAGGAGAAAGGTTTGATCAAGCAGTTTTGG-GTTGCGGTGGTGG-CG-GTTGC-A-CTC 57
Query 129 ATGGTTCATGTCTCTGTTTCAGTTCCGTTCATAATGCTTCATGGGATCTCAGCT-CAATG 187
|| |||| ||||| || || ||||||||| | ||||||| || ||| | ||| | ||
Sbjct 58 TTGATTCACGTCTCAGTCTCGGTTCCGTTCGTCGTGCTTCACGGAATCACCGCTGC-GTG 116
Query 188 TTCTAATGCTAGGGATGCTAACTTCACACAGCTTCTCACT-AACCTCTCTGGCTCTCCTG 246
||| || | | | |||| ||||||||||||||||||| | |||||||||||||||| |
Sbjct 117 TTCCGATCCGACGAATGCCAACTTCACACAGCTTCTCA-TGAACCTCTCTGGCTCTCAAG 175
Query 247 GCTTTTGCTTAGAAATTGGAAATGGAGTTGC--CGATTC-ATGGTTAATGCCGCTTACAC 303
| | ||||||||||||||| ||||| || | || ||| || | | ||||| |||||||
Sbjct 176 GGTCATGCTTAGAAATTGGAGATGGA-TT-CTTCGCTTCAAT-GCTCATGCCACTTACAC 232
Query 304 GA-CAAGCGGAAATAGCGTGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAAGGATAC 362
| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 -AGCAAGCTGAGATAGCGTGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAAGGATAC 291
Query 363 AACATTGTTGGAAGATCTCAG--GG----G---AACCTAGTGGCTCGAGGCTTGATCGAG 413
||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 292 AACATTGTTGGAAGATCTCAGATGGAACAGGGGAACCTAGTGGCTCGAGGCTTGATCGAG 351
Query 414 TTCTGTGACGGTGGCCCTCCGGTTTACAACTATATATCCTT-GGCCGGTCCTCATGCTGG 472
||||| ||||| || |||||||| |||||||| ||||| || || ||||||||||||||
Sbjct 352 TTCTGCGACGGCGGGCCTCCGGTGTACAACTACATATCTTTAGGT-GGTCCTCATGCTGG 410
Query 473 CATCTCCTCTGTTCCTATGTGTGGTTCTG-GTTTAT---TCT-GTAAGTTA-GCA---GA 523
|| ||||||||||||| ||||||| | | | ||| ||| || | ||| ||
Sbjct 411 GATATCCTCTGTTCCTACGTGTGGTGCACAGATGCCCGGTCTCGTATGTGATGCATTTGA 470
Query 524 TGAGCTAATCAAGGGAGATATCTATAGCGACTTCATTCAAGATCATCTTGCTCCTAGTGG 583
|| |||| |||| | |||| |||||||||| ||| |||| |||||| ||||||| |||||
Sbjct 471 TGCGCTAGTCAAAGCAGATGTCTATAGCGAGTTCGTTCAGGATCATTTTGCTCCCAGTGG 530
Query 584 TTATCTCAAAATTCCTACTG-ATATGACAAAG-TACTTGGGAAGCTCTAAGTATTTACCT 641
|||| |||||| |||| || |||||| | || ||| ||| || ||| |||||| | |||
Sbjct 531 TTATTTCAAAAACCCTA-TGGATATGA-AGAGGTACCTGGAAAACTCGAAGTATCTGCCT 588
Query 642 AAGCTTAACAATGAGATACCAGACCAAAGAAAC-CAAACTTACAAAGACCGTTTCACCAG 700
||||||| ||||||||||||| ||||||||||| ||| |||||||||| |||||||||||
Sbjct 589 AAGCTTAGCAATGAGATACCAAACCAAAGAAACTCAA-CTTACAAAGATCGTTTCACCAG 647
Query 701 TTTACATAA-CTTGGTTCTTATCAAGTTTCAGGGCGACAAGG-TTAT-AGTTCCAAAAGA 757
|||||| || || ||||||| ||||||||||| ||| || | |||| | | ||||| ||
Sbjct 648 TTTACACAATCT-GGTTCTTGTCAAGTTTCAGAACGA-AACGATTATCA-TCCCAAATGA 704
Query 758 TTCATCTTGGTTCGGGTTTTATCCGGATGGTGAATTCGAACCTC-TTCTCTCTGCTCAAC 816
||| |||||||||||||||| ||||||||| | ||||||| | ||||| | ||| |||
Sbjct 705 CTCAACTTGGTTCGGGTTTTACCCGGATGGTCAGGTCGAACC-CGTTCTCCCGGCT-AAC 762
Query 817 A-GACAAAGCTCTATACAGAGGATTGGATCGG-TCTGAAAACATTGGATGATGCGGGAAA 874
| |||| |||||| || |||||||||||||| | ||||||||||||||| || |||||
Sbjct 763 AAGACAGCGCTCTACACCGAGGATTGGATCGGAT-TGAAAACATTGGATGCGGCTGGAAA 821
Query 875 AGTGAAGTTTGTGAGTGTAGCC-GGTGAACATATCAGAA-TGGTAGATGAAGATGTCGTC 932
||||||||| ||||||||| || |||| |||| || ||| ||| |||| | |||||| ||
Sbjct 822 AGTGAAGTTCGTGAGTGTA-CCAGGTGGACATCTC-GAAATGGCAGATCATGATGTCCTC 879
Query 933 AAACACGTTGTACCTTATCTCCAG 956
||| || | || || ||||| |||
Sbjct 880 AAATACATCGTCCCGTATCTTCAG 903
> Ahg948213 jgi|Araly1|948213|scaffold_800100.1
Length=495
Score = 346 bits (187), Expect = 2e-94
Identities = 360/439 (82%), Gaps = 30/439 (7%)
Strand=Plus/Plus
Query 71 AATGGGA-GAGAAAGGTTTG---AAGC-GGTCTGGTGTTGCGGTGGTGGTTGCATTACTA 125
||| ||| |||||||||||| |||| | | ||| ||||||||||||| | || | |
Sbjct 24 AAT-GGAGGAGAAAGGTTTGATCAAGCAGTTTTGG-GTTGCGGTGGTGG-CG-GTTGC-A 78
Query 126 GC-CATGGTTCATGTCTCTGTTTCAGTTCCGTTCATAATGCTTCATGGGATCTCAGCT-C 183
| | || |||| ||||| || || ||||||||| | ||||||| || ||| | ||| |
Sbjct 79 -CTCTTGATTCACGTCTCAGTCTCGGTTCCGTTCGTCGTGCTTCACGGAATCACCGCTGC 137
Query 184 AATGTTCTAATGCTAGGGATGCTAACTTCACACAGCTTCTCACT-AACCTCTCTGGCTCT 242
||||| || | | | |||| ||||||||||||||||||| | |||||||||||||||
Sbjct 138 -GTGTTCCGATCCGACGAATGCCAACTTCACACAGCTTCTCA-TGAACCTCTCTGGCTCT 195
Query 243 CCTGGCTTTTGCTTAGAAATT-G-GA-AATGGAGTTGC-CGA-TTC-ATGGTTAATGCCG 296
| || | |||||||||||| | || |||||| | | | ||| || || |||||
Sbjct 196 CAAGGGTCATGCTTAGAAATTGGAGACAATGGA-CAACTC-ACTTCAAT-CTTCATGCCA 252
Query 297 CTTACACGA-CAAGCGGAAATAGCGTGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCA 355
||||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 253 CTTACAC-AGCAAGCTGAAATAGCATGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCA 311
Query 356 AGGATACAACATTGTTGGAAGATCTCAGGGGAACCTAGTGGCTCGAGGCTTGATCGAGTT 415
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 312 AGGATACAACATTGTTGGAAGATCTCAGGGGAACTTAGTGGCTCGAGGCTTGATCGAATT 371
Query 416 CTGTGACGGTGGCCCTCCGGTTTACAACTATATATCCTT-GGCCGGTCCTCATGCTGGCA 474
||| ||||| || ||||||||||||||||| ||||| || || |||||||||||||| |
Sbjct 372 CTGCGACGGCGGGCCTCCGGTTTACAACTACATATCTTTAGGT-GGTCCTCATGCTGGGA 430
Query 475 TCTCCTCTGTTCCTA-TGT 492
| ||||||||||||| |||
Sbjct 431 TATCCTCTGTTCCTACTGT 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42011454534
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5