BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47350.1
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330701 jgi|Araly1|330701|fgenesh1_pm.C_scaffold_8000044 1269 0.0
Ahg356260 jgi|Araly1|356260|fgenesh1_pg.C_scaffold_8000047 1188 0.0
Ahg494249 jgi|Araly1|494249|fgenesh2_kg.8__65__AT5G47330.1 902 0.0
Ahg915309 jgi|Araly1|915309|Al_scaffold_0008_60 745 0.0
Ahg915342 jgi|Araly1|915342|Al_scaffold_0008_93 399 2e-110
Ahg948213 jgi|Araly1|948213|scaffold_800100.1 248 6e-65
> Ahg330701 jgi|Araly1|330701|fgenesh1_pm.C_scaffold_8000044
Length=951
Score = 1269 bits (687), Expect = 0.0
Identities = 868/956 (91%), Gaps = 10/956 (1%)
Strand=Plus/Plus
Query 66 ATGGAGAAAGGTTTGACGATGTCTTGTGTTTTGGTGGTGGTTGCATTCTTAGCCATGGTT 125
|||||||| ||||||| | |||||||||| |||||||||| ||||||||||||||| ||
Sbjct 1 ATGGAGAAGGGTTTGAAGCGGTCTTGTGTTATGGTGGTGGTCGCATTCTTAGCCATGTTT 60
Query 126 CATGTCTCTGTTTCAGTTCCGTTCGTAGTGTTTCCTGAAATCGGAACACAATGTTCTGAT 185
|||||||||||||||||||||||| || | |||||||||||||||| ||||||||||||
Sbjct 61 CATGTCTCTGTTTCAGTTCCGTTCCTAATACTTCCTGAAATCGGAACTCAATGTTCTGAT 120
Query 186 GCTCCAAATGCTAACTTCACACAGCTTCTCAGTAACCTCTCTA-GCTCACCTGGCTTTTG 244
| | || || |||||||||||||||||||| ||||||||| | |||| |||||||||||
Sbjct 121 GATACAGTTGGTAACTTCACACAGCTTCTCACTAACCTCTC-AGGCTCTCCTGGCTTTTG 179
Query 245 CATAGAAATTGGCGAGGGAAATCCAATAGGCGCTTCATGGTTAATACCACTTACACAACA 304
| ||| ||||||||| |||||| ||||| || |||||||||||||||||||||||||||
Sbjct 180 CTTAGTAATTGGCGATGGAAATGAAATAGCCGGTTCATGGTTAATACCACTTACACAACA 239
Query 305 AGCGGAAG-TAGCGTGTGATAAGGTGACGCAGATGGAAGAGTTGAGTCAAGGATACAACA 363
||||| || |||||||||| ||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 240 AGCGG-AGATAGCGTGTGAGAAGGTGAAGCAAATGGAAGAGTTGAGTCATGGATACAACA 298
Query 364 TTGTTGGAAGAGCTCAGGGGAGCTTAGTGGCTCGAGGCTTAATCGAGTTCTGCGAAGGTG 423
||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||||
Sbjct 299 TTGTTGGAAGAGCTCAGGGGAACCTAGTGGCTCGAGGCTTAATCGAATTCTGCGACGGTG 358
Query 424 GGCCTCCTGTTCACAACTATATATCCTTGGCTGGTCCTCATGCTGGCACCGCCGATCTTC 483
| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 359 GCCCTCCGGTTTACAACTATATATCCTTGGCTGGTCCTCATGCTGGCATCGCCGTTCTTC 418
Query 484 TTCGGTGTAATACTTCTGGCTTAATTTGTGACATAGCAAATGGGATAGGCAA-GGAAAAT 542
|||||||| ||| |||| ||| |||||| ||||||||||||||||||||| || | ||
Sbjct 419 CTCGGTGTACTACATCTGATTTACTTTGTGGCATAGCAAATGGGATAGGCAATGG-AGAT 477
Query 543 CCCTACAGCGACTTTGTTCAAGATAATCTTGCTCCTAGTGGTTATTTCAAAAACCCTAAA 602
||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 478 GTCTATAGCGACTTTGTTCAAGATAGTCTTGCTCCTAGTGGTTATTTCAAAGACCCTAAA 537
Query 603 AATGTGACAGGGTACCTGAAAGACTGTCAGTATCTACCTAAGCTTAACAATGAGAGACCA 662
|||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 538 AATGTGACAGAGTACCTGAAAGGTTGTAAGTATCTACCTAAGCTTAACAATGAGAGACCA 597
Query 663 TACGAAAGAAA-CACAACTTACAAAGACCGTTTCGCAAGTTTACAGAACCTGGTTTTTGT 721
|| ||||||| || ||||||||||||||||||| | |||||||| ||||||||| ||||
Sbjct 598 GACCAAAGAAACCA-AACTTACAAAGACCGTTTCACCAGTTTACACAACCTGGTTCTTGT 656
Query 722 CCTGTTTGAGAACGATACGGTTATTGTTCCAAAAGAGTCATCTTGGTTCGGGTTTTATCC 781
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 657 CCTGTTTCAGAACGATACGGTTATTGTTCCAAAAGAATCATCTTGGTTCGGGTTTTATCC 716
Query 782 GGATGGTGACTTAACACATGTTCTCCCTGTTCA-AGAGACAAAGCTCTATATAGAAGATT 840
||||||||||||||||||||||||| |||| | | ||||||||||||||||||| ||||
Sbjct 717 GGATGGTGACTTAACACATGTTCTCTCTGTGGACA-AGACAAAGCTCTATATAGAGGATT 775
Query 841 GGATAGGTCTGAAAGCATTGGTTGTTGCTGGAAAAGTGCAGTTTGTGAATGTAACCGGTG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 776 GGATAGGTCTGAAAGCATTGGTTGTTGCTGGAAAAGTGCAGTTTGTGAATGTACCCGGTA 835
Query 901 ACCACTTAATAATGGCGGACGAAGATCTCGTCAAATACGTCGTACCTCTTCTCCAGGATC 960
||||||||||||| || || || ||||||||||||||||||||||||||||||||||| |
Sbjct 836 ACCACTTAATAATAGCTGATGAGGATCTCGTCAAATACGTCGTACCTCTTCTCCAGGACC 895
Query 961 AACAGTCTGCCCCACCAAGACTCAACCGCAAGACCAAGGAGCCCTTGCATCCTTAA 1016
| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 896 AGCAGTCTGCCGCACCAAGACTCAACCGCAAGACCAAGGAGCCCTTGCATCTTTAA 951
> Ahg356260 jgi|Araly1|356260|fgenesh1_pg.C_scaffold_8000047
Length=942
Score = 1188 bits (643), Expect = 0.0
Identities = 855/956 (89%), Gaps = 19/956 (2%)
Strand=Plus/Plus
Query 66 ATGGAGAAAGGTTTGACGATGTCTTGTGTTTTGGTGGTGGTTGCATTCTTAGCCATGGTT 125
|||||||||||||||| | |||||||||| |||||||||||||||||||||| ||||||
Sbjct 1 ATGGAGAAAGGTTTGAAGCGGTCTTGTGTTATGGTGGTGGTTGCATTCTTAGCTATGGTT 60
Query 126 CATGTCTCTGTTTCAGTTCCGTTCGTAGTGTTTCCTGAAATCGGAACACAATGTTCTGAT 185
||||||||| |||||||||||||| || | ||| |||||||||||| ||||||||||||
Sbjct 61 CATGTCTCTCTTTCAGTTCCGTTCATAATACTTCATGAAATCGGAACTCAATGTTCTGAT 120
Query 186 GCTCCAAATGCTAACTTCACACAGCTTCTCAGTAACCTCTCTAGCTCACCTGGCTTTTGC 245
||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||
Sbjct 121 GCTACAAATGCTAACTTCACACAGCTTCTCACTAACCTCTCTGGCTCTCCTGGCTTTTGC 180
Query 246 ATAGAAATTGGCGAGGGAAATCCAATAGGCGCTTCATGGTTAATACCACTTACACAACAA 305
||||||||||| | || ||| | | ||| |||||||||||| |||||||| | |||
Sbjct 181 TTAGAAATTGGCAATGG-AAT---A-A-GCGATTCATGGTTAATGCCACTTACGCGGCAA 234
Query 306 GCGGAAGTAGCGTGTGATAAGGTGACGCAGATGGAAGAGTTGAGTCAAGGATACAACATT 365
|||||| ||||||||||||| |||| ||| |||||||||||||||| |||||||||||||
Sbjct 235 GCGGAAATAGCGTGTGATAATGTGAAGCAAATGGAAGAGTTGAGTCTAGGATACAACATT 294
Query 366 GTTGGAAGAGCTCAGGGGAGCTTAGTGGCTCGAGGCTTAATCGAGTTCTGCGAAGGTGGG 425
||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||
Sbjct 295 GTTGGAAGAGCTCAGGGGAACTTAGTGGCTCGAGGCTTGATCGAGTTCTGCGACGGTGGG 354
Query 426 CCTCCTGTTCACAACTATATATCCTTGGCTGGTCCTCATGCTGGCACCGCCGATCTTCTT 485
||||||||| |||||||||||||||||||||||||||||||||||| ||||| | ||| |
Sbjct 355 CCTCCTGTTTACAACTATATATCCTTGGCTGGTCCTCATGCTGGCATCGCCGCTTTTCCT 414
Query 486 CGGTGTAATACTTCTGGCTTAATTTGTGACATAGCAAATGGGA-TAGGCAA-GGAAAATC 543
| ||||||| || |||| |||||| ||||| |||||| || || ||| || | ||
Sbjct 415 CCGTGTAATTCTGGTGGC---ATTTGTAACATAACAAATGAGATTA-TCAATGG-AGATG 469
Query 544 CCTACAGCGACTTTGTTCAAGATAATCTTGCTCCTAGTGGTTATTTCAAAAACCCTAAAA 603
||| |||||||||| ||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 470 TCTATAGCGACTTTGCTCAAGATAATCTTGCTCCTAGTGGTTATTACAAAAACCCTCATA 529
Query 604 ATGTGACAGGGTACCTGAAAGACTGTCAGTATCTACCTAAGCTTAACAATGAGAGACCAT 663
||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 530 ATGTGACAGAGTACCTGAAAGGTTGTAAGTATCTACCTAAGCTTAACAATGAGAGACCGG 589
Query 664 ACGAAAGAAA-CACAACTTACAAAGACCGTTTCGCAAGTTTACAGAACCTGGTTTTTGTC 722
|| ||||||| || ||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 590 ACCAAAGAAACCA-AACTTACAAAGACCGTTTCACCAGTTTACAGAAGCTGGTTTTTGTC 648
Query 723 CTGTTTGAGAACGATACGGTTATTGTTCCAAAAGAGTCATCTTGGTTCGGGTTTTATCCG 782
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 649 CTGTTTCAGAACGATACGGTTATTGTCCCAAAAGAGTCATCTTGGTTCGGGTTTTATCCA 708
Query 783 GATGGTGACTTAACACATGTTCTCCCTGT-TCAAGAGACAAAGCTCTATATAGAAGATTG 841
||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 709 GATGGTGACTTAACACATGTTCTCCCTGTGTC-CCAGACAAAGCTCTATATAGAGGATTG 767
Query 842 GATAGGTCTGAAAGCATTGG-TTGTTGCTGGAAAAGTGCAGTTTGTGAATGTAACCGGTG 900
|||||||||||||||||||| | | ||||||||||||||||||||||| |||| || |||
Sbjct 768 GATAGGTCTGAAAGCATTGGCTCG-TGCTGGAAAAGTGCAGTTTGTGATTGTACCCAGTG 826
Query 901 ACCACTTAATAATGGCGGACGAAGATCTCGTCAAATACGTCGTACCTCTTCTCCAGGATC 960
|||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||| |
Sbjct 827 CCCACTTAATAATTGCGGATGAAGATCTCGTCAACTACGTCGTACCTCTTCTCGAGGACC 886
Query 961 AACAGTCTGCCCCACCAAGACTCAACCGCAAGACCAAGGAGCCCTTGCATCCTTAA 1016
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 AAGTGTCTGCCGCACCAAGACTCAACCGCAAGACCAAGGAGCCCTTGCATCCTTAA 942
> Ahg494249 jgi|Araly1|494249|fgenesh2_kg.8__65__AT5G47330.1
Length=1110
Score = 902 bits (488), Expect = 0.0
Identities = 871/1055 (83%), Gaps = 29/1055 (3%)
Strand=Plus/Plus
Query 72 AAAGGTTTGACGATGTCTTGTGTTTTGGTGGTGGTTGCATTCTTAGCCATGGTTCATGTC 131
|||||||||| | |||||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 70 AAAGGTTTGAAGCGGTCTTGTGTTGCGGTGGCGGTTGCATTATTAGCCATGGTTCATGTC 129
Query 132 TCTGTTTCAGTTCCGTTCGTAGTGTTTCCTGAAATCGGAACACAATGTTCTGATGCTCCA 191
|||||||||||||||||| || || ||| || |||| | | ||||||||| ||||| |
Sbjct 130 TCTGTTTCAGTTCCGTTCATAATGCTTCATGGAATCTCAGCTCAATGTTCTAATGCTAGA 189
Query 192 AATGCTAACTTCACACAGCTTCTCAGTAACCTCTCTAGCTCACCTGGCTTTTGCATAGAA 251
|||||||||||||||||||||||| |||||||||| |||| |||||||||||| |||||
Sbjct 190 GATGCTAACTTCACACAGCTTCTCACTAACCTCTCTGGCTCTCCTGGCTTTTGCTTAGAA 249
Query 252 ATTGGCGAGGGAAATCCAATAGGCGCTTCATGGTTAATACCACTTACACAACAAGCGGAA 311
||| |||||| | |||||| |||||||||||| |||||||| | |||||||||
Sbjct 250 ATT------GGAAATGGAGTAGGCGATTCATGGTTAATGCCACTTACGCGGCAAGCGGAA 303
Query 312 GTAGCGTGTGATAAGGTGACGCAGATGGAAGAGTTGAGTCAAGGATACAACATTGTTGGA 371
|||||||||| ||||||| ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 304 ATAGCGTGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAAGGATACAACATTGTTGGA 363
Query 372 AGAGCTCAGGGGAGCTTAGTGGCTCGAGGCTTAATCGAGTTCTGCGAAGGTGGGCCTCCT 431
||| ||||||||| | ||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 364 AGATCTCAGGGGAACCTAGTGGCTCGAGGCTTAATTGAGTTCTGCGACGGTGGCCCTCCG 423
Query 432 GTTCACAACTATATATCCTTGGCTGGTCCTCATGCTGGCACCGCCGATCTTCTTCGGTGT 491
||| ||||||| |||||||||||||||||||||||||| | || | ||| | ||||
Sbjct 424 GTTTACAACTACATATCCTTGGCTGGTCCTCATGCTGGAATATCCTCTGTTCCTATGTGT 483
Query 492 AATACTTCTGGCTTAATT-TGTGACATAGCAAATGGGATAGGCAAGGAAAATCCCTACAG 550
| | |||| ||| || ||| | ||||| ||| | || ||||| | || ||| ||
Sbjct 484 GGT--T-CTGGTTTA-TTCTGTAAGTTAGCAGATGAGCTAATCAAGGGAGATATCTATAG 539
Query 551 CGACTTTGTTCAAGATAATCTTGCTCCTAGTGGTTATTTCAAAAACCCTAAAAATGTGAC 610
|||||| |||||||| |||||||||||||||||||| |||||| |||| || |||
Sbjct 540 CGACTTCATTCAAGATCATCTTGCTCCTAGTGGTTATCTCAAAATTCCTACTGATATGAA 599
Query 611 AGGGTACCTG-AAAGACTGTCAGTATCTACCTAAGCTTAACAATGAGAGACCATA-CGAA 668
| |||| || ||| ||| | ||||||||||||||||||||||||||| |||| | | ||
Sbjct 600 AAAGTACTTGGAAA-ACTCTAAGTATCTACCTAAGCTTAACAATGAGATACCAAATC-AA 657
Query 669 AGAAACACAACTTACAAAGACCGTTTCGCAAGTTTACAGAACCTGGTTTTTGTCCTGTTT 728
|||||| |||||||||||||||||||| | |||||||| ||| ||||| || || ||||
Sbjct 658 AGAAACTCAACTTACAAAGACCGTTTCACCAGTTTACATAACTTGGTTCTTATCAAGTTT 717
Query 729 GAGAACGATACGGTTATTGTTCCAAAAGAGTCATCTTGGTTCGGGTTTTATCCGGATGGT 788
|| |||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 718 CAGGACGATAAGGTTATTGTTCCAAAAGATTCATCGTGGTTCGGGTTTTATCCGGATGGT 777
Query 789 GACTTA-ACACATGTTCTCCCTGTTCAAGAGACAAAGCTCTATATAGAAGATTGGATAGG 847
|| || | |||| ||||| ||| |||| ||||||||||||||| ||| |||||||||||
Sbjct 778 GAATTTGA-ACATCTTCTCTCTGCTCAACAGACAAAGCTCTATACAGAGGATTGGATAGG 836
Query 848 TCTGAAAGCATTGGTTGTTGCTGGAAAAGTGCAGTTTGTGAATGTAACCGGTGACCACT- 906
||||||| |||||| || ||||||||||||| ||||||||| |||| ||||||| || |
Sbjct 837 TCTGAAAACATTGGATGATGCTGGAAAAGTGAAGTTTGTGAGTGTAGCCGGTGAACA-TA 895
Query 907 TAATAATGGCGGACGAAGATCTCGTCAAATACGTCGTACCTCT-TCTCCAGGATCAACAG 965
| | |||||| || |||||| |||||||| | || |||||| | ||||||||| |||| |
Sbjct 896 TCAGAATGGCAGATGAAGATGTCGTCAAACATGTTGTACCT-TATCTCCAGGACCAACCG 954
Query 966 TCTGCCCCACCAAGACTCAACCGCAAGACCAAGGAGCCCTTGCATCCTTAAAATGAGCAA 1025
||| | | |||||||||||||||||| ||| |||||||| |||||||||| ||||||
Sbjct 955 TCTTCGGTGCAAAGACTCAACCGCAAGACGAAGCAGCCCTTGAATCCTTAAAAAGAGCAA 1014
Query 1026 ATAGTTCAATCGCTAT---ACTAATTCATCCAATGT--CGAATAA-GCTCAGTGATGATT 1079
||| ||||| | ||| ||| |||||| |||| | |||| || ||| ||| ||||||
Sbjct 1015 ATACCTCAATAGTTATTTTACTTATTCATGCAATTTATCGAAAAAAGCTTAGTAATGATT 1074
Query 1080 GTGT-GACACAATAATCCTTCTTCTTATATGAATA 1113
||| || || | |||| || ||||||||| ||||
Sbjct 1075 TTGTAGA-ACTAGAATCATTATTCTTATATAAATA 1108
> Ahg915309 jgi|Araly1|915309|Al_scaffold_0008_60
Length=954
Score = 745 bits (403), Expect = 0.0
Identities = 795/978 (81%), Gaps = 51/978 (5%)
Strand=Plus/Plus
Query 66 ATGGAGAAAGGTTTGACGATGTCTTGTGTTTTGGTGGTGGTTGCATTCTTAGCCATGGTT 125
|||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAAGGTTTGAAGCGGTCTGGTGTTATGGTGGTGGTTGCATTCTTAGCCATGGTT 60
Query 126 CATGTCTCTGTTTCAGTTCCGTTCGTAGTGTTTCCTGAAATCGGAACACAATGTTCTGAT 185
||||||||| | |||||||||||| || || ||| || ||||| | | || |||||||||
Sbjct 61 CATGTCTCTCTATCAGTTCCGTTCATAATGCTTCATGGAATCGCATCTCATTGTTCTGAT 120
Query 186 GCTCCAAATGCTAACTTCACACAGCTTCTCAGTAACCTCTCTAGCTCACCTGGCTTTTGC 245
||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||
Sbjct 121 GCTACAAATGCTAACTTCACACAGCTTCTCACTAACCTCTCTGGCTCTCCTGGCTTTTGC 180
Query 246 ATAGAAATTGGCGAGGGAAATCCAATAGGCGCTTCATGGTTAATACCACTTACACAACAA 305
|||||||| |||||| | ||| |||||| ||| | |||||||||||||||
Sbjct 181 GTAGAAATT------GGAAATGGAGTAGTAACTTCATTGTTCTTGCCACTTACACAACAA 234
Query 306 GCGGAAGTAGCGTGTGATAAGGTGACGCAGATGGAAGAGTTGAGTCAAGGATACAACATT 365
|| ||| |||| ||||| || |||| ||| ||| ||||||||||||||||||||||||||
Sbjct 235 GCAGAAATAGCATGTGAGAATGTGAAGCAAATGAAAGAGTTGAGTCAAGGATACAACATT 294
Query 366 GTTGGAAGAGCTCAGGGGAGCTTAGTGGCTCGAGGCTTAATCGAGTTCTGCGAAGGTGGG 425
||||||||| ||||||||| | |||||||| ||||||| |||||||||||||| | |||
Sbjct 295 GTTGGAAGATCTCAGGGGAACCTAGTGGCTAGAGGCTTGATCGAGTTCTGCGACGATGGA 354
Query 426 CCTCCTGTTCACAACTATATATCCTTGGCTGGTCCTCATGCTGGCA--CCGCCGATCTTC 483
||||| ||| |||||||||||||||| ||||||||||||||||||| | | || | |
Sbjct 355 CCTCCGGTTTACAACTATATATCCTTAGCTGGTCCTCATGCTGGCATTTCTTCTAT-TCC 413
Query 484 TTCGGTGTAATACTTCTGGCTT-AA-TTTG-T-GA-CA--T-AGCAAATGGGAT-AG--G 532
| ||| | || || ||| || || | | | | || | || |||| ||| || |
Sbjct 414 TCCGG-CT-AT--TTGTGGTTTGAAGTCCGATCCAGCATGTAAG-AAATTTGATGAGTTG 468
Query 533 --CAAGGAAAATCCCTACAGCGACTTTGTTCAAGATAATCTTGCTCCTAGTGGTTATTTC 590
||||| | || ||| ||||| || |||||||| ||||||||||||||||||||| |
Sbjct 469 ATCAAGGGAGCTCTCTATAGCGAGTTCATTCAAGATCATCTTGCTCCTAGTGGTTATTAC 528
Query 591 AAAAACCCTAAAAATGTGACA-GGGTACCT-GAAAGACTGTCAGTATCTACCTAAGCTTA 648
|||| |||||| || | | | | |||| | |||| ||| | ||||||||||||||||||
Sbjct 529 AAAATCCCTAATGATAT-AAATGAGTACTTGGAAA-ACTCTAAGTATCTACCTAAGCTTA 586
Query 649 ACAATGAGAGACCATACGAAAGAAA-CACAACTTACAAAGACCGTTTCGCAAGTTTACAG 707
||||||||| |||| || ||||||| || ||||||||||||||||||| | | |||||||
Sbjct 587 ACAATGAGATACCAGACCAAAGAAACCA-AACTTACAAAGACCGTTTCACCATTTTACAG 645
Query 708 AACCTGGTTTTTGTCCTGTTTGAGAACGAT-ACGGTTATTGTTCCAAAAGAGTCATCTTG 766
||||| ||| ||||| |||| || ||||| | | ||||| |||||| || ||| ||||
Sbjct 646 AACCTAGTTCTTGTCAAGTTTCAGGACGATGA-GATTATTACTCCAAATGATTCAACTTG 704
Query 767 GTTCGGGTTTTATCCGGATGGTGACTT--AACACATGTTCTCCCTGTTCAA-GAGACAAA 823
||| |||||||||||||| ||||| || ||| | | ||||| || | || |||||||
Sbjct 705 GTTTGGGTTTTATCCGGAGGGTGAATTCGAAC-C-TCTTCTCTCTCCT-AACCAGACAAA 761
Query 824 GCTCTATATAGAAGATTGGATAGGTCTGAAAGCATTGGTTGTTGCTGGAAAAGTGCAGTT 883
|||||||| ||| |||||||| ||||||||| |||||| || ||||||||||||| ||||
Sbjct 762 GCTCTATACAGAGGATTGGATCGGTCTGAAAACATTGGATGATGCTGGAAAAGTGAAGTT 821
Query 884 TGTGAATGTAACCGGT-GACCA-CTTAATAATGGCGGA-CGAAGATCTCGTCAAATACGT 940
||||| |||| ||||| || || || || |||||||| | ||||| |||||||| | ||
Sbjct 822 TGTGAGTGTAGCCGGTGGA-CACCTCAA-CATGGCGGATC-AAGATGTCGTCAAACATGT 878
Query 941 CGTACCTCT-TCTCCAGGATCAACAGTCTGCCCCACCAAGAC-TCAACCGCAAGACCAAG 998
|||||| | ||||||| | |||| |||| || || ||| | |||||||||||||||||
Sbjct 879 TGTACCT-TATCTCCAGAACCAACCGTCTTCCGTACAAAG-CTTCAACCGCAAGACCAAG 936
Query 999 GAGCCCTTGCATCCTTAA 1016
|||||||||||||| |||
Sbjct 937 GAGCCCTTGCATCCCTAA 954
> Ahg915342 jgi|Araly1|915342|Al_scaffold_0008_93
Length=915
Score = 399 bits (216), Expect = 2e-110
Identities = 669/878 (76%), Gaps = 69/878 (8%)
Strand=Plus/Plus
Query 124 TTCATGTCTCTGTTTCAGTTCCGTTCGTAGTGTTTC-CTGAAATCGGAACAC--AATGTT 180
|||| ||||| || || ||||||||||| ||| ||| | | |||| | | | ||||
Sbjct 62 TTCACGTCTCAGTCTCGGTTCCGTTCGTCGTGCTTCAC-GGAATC--ACCGCTGCGTGTT 118
Query 181 CTGATGCTCCAAATGCTAACTTCACACAGCTTCTCAGT-AACCTCTCTAGCTCACCTGGC 239
| ||| | | ||||| ||||||||||||||||||| | ||||||||| |||| | ||
Sbjct 119 CCGATCCGACGAATGCCAACTTCACACAGCTTCTCA-TGAACCTCTCTGGCTCTCAAGGG 177
Query 240 TTTTGCATAGAAATTGGCGAGGGAAATCCAATAGGCGCTTC-ATGGTTAATACCACTTAC 298
| ||| |||||||||| || || || | | |||||| || | | || ||||||||
Sbjct 178 TCATGCTTAGAAATTGGAGATGG--ATTC--T--TCGCTTCAAT-GCTCATGCCACTTAC 230
Query 299 ACAACAAGCGGAAG-TAGCGTGTGATAAGGTGACGCAGATGGAAGAGTTGAGTCAAGGAT 357
||| ||||| | || |||||||||| ||||||| ||| ||| ||||||||||||||||||
Sbjct 231 ACAGCAAGCTG-AGATAGCGTGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAAGGAT 289
Query 358 ACAACATTGTTGGAAGAGCTCAGG-GGA---G-----CTTAGTGGCTCGAGGCTTAATCG 408
||||||||||||||||| ||||| ||| | | |||||||||||||||| ||||
Sbjct 290 ACAACATTGTTGGAAGATCTCAGATGGAACAGGGGAACCTAGTGGCTCGAGGCTTGATCG 349
Query 409 AGTTCTGCGAAGGTGGGCCTCCTGT-TCACAACTATATATCCTT-GGCTGGTCCTCATGC 466
|||||||||| || |||||||| || | ||||||| ||||| || || ||||||||||||
Sbjct 350 AGTTCTGCGACGGCGGGCCTCCGGTGT-ACAACTACATATCTTTAGG-TGGTCCTCATGC 407
Query 467 TGGCACCGCCGATCTTCTT-CG-GTG-TA-ATACTT-CT-GG-CTTAATTTGTGACATAG 519
||| | || | ||| | || ||| | | | | | || || | ||||| | |
Sbjct 408 TGGGATATCCTCTGTTCCTACGTGTGGTGCACAGATGCCCGGTCTCG-TATGTGA--T-G 463
Query 520 CAAATG--G-GATAGGCAAGGAAAATCCCTACAGCGACTTTGTTCAAGATAATCTTGCTC 576
|| || | | ||| ||| | | || ||| ||||| || ||||| ||| || ||||||
Sbjct 464 CATTTGATGCGCTAGTCAAAGCAGATGTCTATAGCGAGTTCGTTCAGGATCATTTTGCTC 523
Query 577 CTAGTGGTTATTTCAAAAACCCTAAAAATGTGACAG-GGTACCTG-AAAGACT-GTCAGT 633
| |||||||||||||||||||||| || ||| || |||||||| ||| ||| | |||
Sbjct 524 CCAGTGGTTATTTCAAAAACCCTATGGATATGA-AGAGGTACCTGGAAA-ACTCGA-AGT 580
Query 634 ATCTACCTAAGCTTAACAATGAGAGACCATACGAAAGAAACACAACTTACAAAGACCGTT 693
|||| |||||||||| |||||||| |||| || |||||||| ||||||||||||| ||||
Sbjct 581 ATCTGCCTAAGCTTAGCAATGAGATACCAAACCAAAGAAACTCAACTTACAAAGATCGTT 640
Query 694 TCGCAAGTTTACAGAACCTGGTTTTTGTCCTGTTTGAGAACGATACGGTTATTGTTCCAA 753
|| | |||||||| || |||||| ||||| |||| ||||||| ||| |||| | ||||
Sbjct 641 TCACCAGTTTACACAATCTGGTTCTTGTCAAGTTTCAGAACGAAACGATTATCATCCCAA 700
Query 754 AAGAGTCATCTTGGTTCGGGTTTTATCCGGATGGTGACTT--AACACATGTTCTCCCTGT 811
| || ||| |||||||||||||||| ||||||||| | | ||| | |||||||| |
Sbjct 701 ATGACTCAACTTGGTTCGGGTTTTACCCGGATGGTCAGGTCGAACCC--GTTCTCCCGGC 758
Query 812 TCAAGA-GACAAAGCTCTATATAGAAGATTGGATAGG-TCTGAAAGCATTGGTTGTTGCT 869
| || | |||| |||||| | || |||||||| || | ||||| |||||| || |||
Sbjct 759 T-AACAAGACAGCGCTCTACACCGAGGATTGGATCGGAT-TGAAAACATTGGATGCGGCT 816
Query 870 GGAAAAGTGCAGTTTGTGAATGTAACC-GGTG-ACCA-CTTAATAATGGCGGA-CGAAGA 925
||||||||| |||| |||| |||| || |||| || | || | |||||| || | | ||
Sbjct 817 GGAAAAGTGAAGTTCGTGAGTGTA-CCAGGTGGAC-ATCTCGA-AATGGCAGATC-ATGA 872
Query 926 TCTCGTCAAATACGTCGTACC-TCTTCTCCAGGATCAA 962
| || |||||||| |||| || | | || ||| |||||
Sbjct 873 TGTCCTCAAATACATCGTCCCGTAT-CTTCAGAATCAA 909
> Ahg948213 jgi|Araly1|948213|scaffold_800100.1
Length=495
Score = 248 bits (134), Expect = 6e-65
Identities = 284/354 (80%), Gaps = 19/354 (5%)
Strand=Plus/Plus
Query 124 TTCATGTCTCTGTTTCAGTTCCGTTCGTAGTGTTTC-CTGAAATCGGAACAC--AATGTT 180
|||| ||||| || || ||||||||||| ||| ||| | | |||| | | | ||||
Sbjct 86 TTCACGTCTCAGTCTCGGTTCCGTTCGTCGTGCTTCAC-GGAATC--ACCGCTGCGTGTT 142
Query 181 CTGATGCTCCAAATGCTAACTTCACACAGCTTCTCAGT-AACCTCTCTAGCTCACCTGGC 239
| ||| | | ||||| ||||||||||||||||||| | ||||||||| |||| | ||
Sbjct 143 CCGATCCGACGAATGCCAACTTCACACAGCTTCTCA-TGAACCTCTCTGGCTCTCAAGGG 201
Query 240 TTTTGCATAGAAATTGGCGAGGGA-AATCCA-ATAGGCGCTTC-ATGGTTAATACCACTT 296
| ||| |||||||| | || || ||| | | | | |||| || || || ||||||
Sbjct 202 TCATGCTTAGAAATT-G-GA--GACAATGGACA-ACTCACTTCAAT-CTTCATGCCACTT 255
Query 297 ACACAACAAGCGGAAGTAGCGTGTGATAAGGTGACGCAGATGGAAGAGTTGAGTCAAGGA 356
||||| ||||| ||| |||| ||||| ||||||| ||| ||| |||||||||||||||||
Sbjct 256 ACACAGCAAGCTGAAATAGCATGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAAGGA 315
Query 357 TACAACATTGTTGGAAGAGCTCAGGGGAGCTTAGTGGCTCGAGGCTTAATCGAGTTCTGC 416
|||||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||
Sbjct 316 TACAACATTGTTGGAAGATCTCAGGGGAACTTAGTGGCTCGAGGCTTGATCGAATTCTGC 375
Query 417 GAAGGTGGGCCTCCTGTTCACAACTATATATCCTT-GGCTGGTCCTCATGCTGG 469
|| || |||||||| ||| ||||||| ||||| || || |||||||||||||||
Sbjct 376 GACGGCGGGCCTCCGGTTTACAACTACATATCTTTAGG-TGGTCCTCATGCTGG 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42926404542
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5