BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47360.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948172 jgi|Araly1|948172|scaffold_800059.1 2139 0.0
> Ahg948172 jgi|Araly1|948172|scaffold_800059.1
Length=1479
Score = 2139 bits (1158), Expect = 0.0
Identities = 1347/1439 (94%), Gaps = 10/1439 (1%)
Strand=Plus/Plus
Query 1 ATGCCAAATTCA-TTGATTTCTCGTCTGGTATCTCCTTCATTACGATCTCAGCCCTCAAA 59
|||| ||| ||| ||||||||||||||| | |||||||||||| |||||| ||||||||
Sbjct 22 ATGCTAAA-TCACTTGATTTCTCGTCTGTTGCCTCCTTCATTACTATCTCATCCCTCAAA 80
Query 60 AATCTCAGCTTTACGTTTTTTAACAACTGTCTCAGCCGCCGAGAGATTATACGGCCAGCT 119
||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 81 AATCTCAGCTTTACGGTTTTCCACAACTGTCTCAGCCGCCGATAGATTATACGGCCATCT 140
Query 120 TCAAGGATGCACAAGTAATCTCGAGAAAGAATTAGCTTCGGCTAATGTACAA-TTAGACT 178
||||||| ||||||| |||| |||||| || ||||| || ||||||||| || || ||||
Sbjct 141 TCAAGGAGGCACAAGCAATCCCGAGAAGGATTTAGCCTCAGCTAATGTA-AATTTGGACT 199
Query 179 CCTCTTGTATCAACGAGGTACTAAGAAGATGCGATCCAAATCAATTTCAATCGGGTCTTA 238
|||||| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 200 CCTCTTCTATCAACGAGGTAATAAAAAGATGCGATCCAAATCAATTTCAATTGGGTCTTA 259
Query 239 GGTTTTTCATATGGGCAGGAACTCTATCCAGCCATAGACACAGTGCTTACATGTATACCA 298
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 260 GGTTTTTCATATGGGCAGGAACTCAATCCAGCCATAGACACAGTCCTTACATGTATACCA 319
Query 299 AAGCTTGCGACATTCTTAAGATTAGAGCAAAGCCAGATTTGATCAAATACGTTATTGAAT 358
||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 320 AAGCTTGCGACTTTCTTAAGATTAGAGCAAACCCAGATTTGATCAAAGACGTTGTTGAAG 379
Query 359 CTTATCGGAAAGAAGAATGCTTTGTTAATGTTAAGACGATGAGGATTGTTCTGACTCTGT 418
||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 380 CTTATAAGAAAGAAGAATGCTTTGTTAGTGTTAAGACGATGAGGATTGTTTTGACTCTGT 439
Query 419 GTAATCAAGCGA-ATCTCGCTGATGAGGCATTGTGGGTATTAAGGAAGTTTCCTGAATTT 477
|||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GTAATCAAGCGAGA-CTTGCTGATGAGGCATTGTGGGTATTAAGGAAGTTTCCTGAATTC 498
Query 478 AATGTATGTGCAGACACTGTTGCGTATAATTTGGTGATTAGGTTGTTTGCTGATAAGGGA 537
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 499 GATTTATGCGCAGACACTGTTGCGTATAATTTGGTGATTAGGTTGTTTGCTGATAAAGGA 558
Query 538 GATTTGAATATAGCTGATATGTTGATAAAAGAGATGGATTGTGTTGGTCTTTATCCAGAT 597
||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 559 GATTTGAGTATGGCTGATATGTTGATGAAAGAGATGGATTGTGTTGGTCTTTATCCAGAT 618
Query 598 GTGATTACTTATACGTCGATGATCAATGGGTATTGCAATGCGGGTAAGATTGATGACGCT 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 619 GTGATTACTTATACGTCGATGATCAATGGGTATTGCAATGCGGGTAAGATTGATGAAGCT 678
Query 658 TGGAGGTTAGCTAAGGAGATGAGTAAGCATGATTGCGTGCTTAACAGTGTGACGTATTCT 717
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 679 TGGAGGTTAGCTAAGGAGATGAGTAAGCACGATTGCGTGCTTAACACTGTGACGTATTCG 738
Query 718 AGGATTCTTGAAGGAGTTTGCAAGTCTGGTGATATGGAGAGAGCGTTAGAGTTGTTGGCG 777
|||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 739 AGGATTCTGGAAGGAGTTTGCAAGTCTGGTGATATGGAGACAGTGTTAGAGTTGTTGGAG 798
Query 778 G-AGATGGAGAAAGAAGACGGTGGTGGATTGATTAGTCCGAATGCGGTTACTTATACTTT 836
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GTA-ATGGAGAAAGAAGACGGTGGTGGATTGATTAGTCCGAATGCGGTTACTTATACTTT 857
Query 837 GGTGATTCAAGCGTTTTGTGAGAAGAGGAGGGTTGA-AGAGGCGTTGTTGGTATTGGATA 895
||| |||||||||||||||||||| | | || || | |||||| ||||||||||||||||
Sbjct 858 GGTAATTCAAGCGTTTTGTGAGAAAAAGCGGATT-AGAGAGGCATTGTTGGTATTGGATA 916
Query 896 GAATGGGAAACCGAGGGTGCATGCCGAATCGTGTTACTGCTTGTGTTTTGATTCAGGGGG 955
||||||| | ||||| |||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 917 GAATGGGGGATCGAGGATGCACGCCGAATCGTGTTACTGCTAGTGTTTTGATTCAGGGGG 976
Query 956 TTTTGGAGAATGATGAGGATGTGAAGGCTCTTTCTAAGTTGATTGATAAGTTGGTGAAAC 1015
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 977 TTTTGGAGAATGATGAGGATGTTAAGGATCTTTCTAAGTTGATTGATAAGTTGGTGAAAC 1036
Query 1016 TAGGCGGTGTTTCTCTTTCTGAGTGTTTTAGTTCGGCTACTGTGTCGCTAATCCGTATGA 1075
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1037 TCGGCGGTGTTTCTCTTTCTGAATGTTTTAGTTCGGCTACTGTGTCGCTGATCCGTATGA 1096
Query 1076 AAAGATGGGAAGAGGCTGAAAAGATTTTCCGTCTGATGTTGGTCCGCGGGGTTAGACCTG 1135
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1097 AAAGATGGGAAGAGGCGGAAAAGATTTTCCGTCTGATGTTGGTCCGCGGGATTAGACCTG 1156
Query 1136 ATGGTCTTGCGTGCAGTCATGTTTTCAGGGAGTTATGTTTGTTGGAAAGGTATCTCGATT 1195
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||
Sbjct 1157 ATGGTCTTGCGTGCAGTCATGTTTTCAGGGAGTTGTGTTTGTCGGAAAGGTATCTTGATT 1216
Query 1196 GTTTCCTTCTGTATCAAGAAATCGAGAAGAAGGATGTGAAATCAACAATAGACTCGGATA 1255
||||| ||||||||||||||||||||||| |||||||||||||||| || ||||||||||
Sbjct 1217 GTTTCGTTCTGTATCAAGAAATCGAGAAGGAGGATGTGAAATCAACGATGGACTCGGATA 1276
Query 1256 TACATGCGGTTCTTTTGCTCGGTCTCTGCCAACAGGGGAATTCTTGGGAAGCTGCTAAGC 1315
|| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1277 TATATGCGGTTCTTTTGCTCGGTCTCTGCCATCATGGGAATTCTTGGGAAGCTGCTAAGC 1336
Query 1316 TTGCGAAATCAATGCTTGACAAGAAAATGAGATTGAAAGTTTCTCATGTTGAGAAAATCA 1375
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 TTGCGAAATCAATGCTTGATAAGAAAATGAGATTGAAAGTTTCTCATGTTGAGAAAATCA 1396
Query 1376 TTGAAGCCTTGAAGAAAACTGGTGATGAAGATCTCATGAGTCGTTTCTCTATTGATTAA 1434
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1397 TTGAAGCCTTGAAGAAAACTGGTGATGAAGATCTCATGAGTCGTTTCTCTACTGATTAA 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5