BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47370.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494245 jgi|Araly1|494245|fgenesh2_kg.8__61__AT5G47370.1 1770 0.0
Ahg946484 jgi|Araly1|946484|scaffold_702713.1 412 2e-114
> Ahg494245 jgi|Araly1|494245|fgenesh2_kg.8__61__AT5G47370.1
Length=1267
Score = 1770 bits (958), Expect = 0.0
Identities = 1194/1299 (92%), Gaps = 51/1299 (4%)
Strand=Plus/Plus
Query 1 AATAATGATGGATTGTAATTAGCCACCTGACAAAATCTCTCATCATTCAAAGTACTATAT 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATAATGATGGATTGCAATTAGCCACCTGACAAAATCTCTCATCATTCAAAGTACTATAT 60
Query 61 TAATCCCCTCTCTTCTTCATTACCATCTCACATCTCTCTCTATTTCTCTTCCACAAAGAG 120
||||||||||||||||||| |||||||||||| |||| |||| | |||||
Sbjct 61 TAATCCCCTCTCTTCTTCAATACCATCTCACA----TCTC----TCTC-T-----AAGAG 106
Query 121 TCCTAACTTCGAGTTGAAACAAACACCATTTCTCATCTCTATCTC-AGAAAGAAC-AAAC 178
|||||||||||||||||||| || ||||| | | || | | | || || |||||| ||||
Sbjct 107 TCCTAACTTCGAGTTGAAAC-AA-ACCATCTGT-AT-TAT-TTTCAAG-AAGAACAAAAC 160
Query 179 CATTTCGTG----TTCTTTCTTTCTCTATTCTCATAAGGAAATATAATTCCTGAAACTGT 234
| ||||||| |||||||||||||||||||| |||| ||| ||||||| |||||||||
Sbjct 161 CTTTTCGTGTTCTTTCTTTCTTTCTCTATTCTCCTAAGAAAAGATAATTCTTGAAACTGT 220
Query 235 TGAGTTCTTGTGAAAGGAAATAAAAAACATGATGATGGGCAAAGAAGATCTAGGTTTGAG 294
|||||||||||| ||||||| ||| |||||||||||| ||||||||||| ||||||||
Sbjct 221 TGAGTTCTTGTG-GAGGAAAT-CAAATCATGATGATGGGAAAAGAAGATCTGGGTTTGAG 278
Query 295 CCTAAGCTTAGGGTTTTCACAAAATCA-CAATCCTCTTCAGATGAATCTGAATCCTAACT 353
| |||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 279 CTTAAGCTTAGGGTTTTCACAAAA-CAGCAATCCTCTTCAGCTGAATCTGAATCCTAACT 337
Query 354 CTTCATTATCAAACAATCTCCAGAGACT-CCCATGGAACCAAACATTCGATCCTACATCA 412
|||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 338 CTTCATTATCAAACAATCTCCAGAGA-TACCCATGGAACCAAACATTCGCTCCTACATCA 396
Query 413 GATCTTCGCAAGATAGACGTGAACAGTTTTCCATCAACGGTTAACTGCGAGGAAGACACA 472
||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| |||
Sbjct 397 GATCTTCGCAAAATAGACGTGAATAGTTTTCCATCAACGACTAACTGCGAGGAAGAAACA 456
Query 473 GGAGTTTCGTCACCAAACAGTACGATCTCAAGCACCATTAGCGGGAAGAGAAGTGAGAGA 532
||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 457 GGAGTTTCGTCTCCAAACAGTACGATCTCAAGCACCATAAGTGGGAAGAGGAGTGAGAGA 516
Query 533 GAAGGAATCTCCGGAACCGGCGTTGGCTCCGGCGACGATCACGACGAGATCACTCCGGAT 592
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 GAAGGAATCTCCGGCACCGGCGTTGGCTCCGGCGACGATCACGACGAGATCACTCCGGAT 576
Query 593 CGAGGGTACTCACGTGGAACCTCAGATGAAGAAGAAGACGGGGGCGAAACGTCGAGGAAG 652
|||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 577 CGAGGGTATTCACGTGGAACCTCCGACGAAGAAGAAGACGGCGGCGAAACGTCGAGGAAG 636
Query 653 AAGCTCAGGTTATCAAAAGATCAGTCTGCTTTTCTCGAAGAGACTTTCAAAGAACACAAC 712
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 637 AAGCTCCGGTTATCGAAAGATCAGTCTGCTTTTCTCGAAGAGACATTCAAAGAACACAAC 696
Query 713 ACTCTCAATCCCAAACAGAAGCTAGCTTTGGCTAAGAAGCTGAACTTGACGGCAAGACAA 772
||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 697 ACTCTCAATCCCAAACAAAAGCTAGCTCTGGCTAAGAAGCTGAACTTGACGGCACGACAA 756
Query 773 GTGGAAGTGTGGTTCCAAAACAGAAGAGCTAGAACCAAGTTAAAGCAAACGGAGGTAGAT 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GTGGAAGTGTGGTTCCAAAACAGAAGAGCTAGAACCAAGTTAAAGCAAACGGAGGTAGAT 816
Query 833 TGCGAATACTTGAAACGGTGCGTAGAGAAGCTAACGGAAGAGAACCGGAGACTTCAGAAA 892
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 817 TGCGAGTACTTGAAACGGTGCGTAGAGAAGCTAACGGAAGAGAATCGGAGACTTCAGAAA 876
Query 893 GAGGCTATGGAGCTTCGAACTCTCAAGCTGTCTCCACAATTCTACGGTCAGATGACTCCA 952
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 877 GAGGCTATGGAGCTTCGAACTCTCAAGCTGTCTCCACAATTCTACGGCCAGATGACTCCA 936
Query 953 CCAACTACACTCATCATGTGTCCTTCGTGCGAGCGTGTGGGTGGCCCATCATCATCGAAC 1012
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 937 CCCACTACACTCATCATGTGTCCTTCGTGCGAGCGTGTGGCTGGCCCATCATCATCGAAC 996
Query 1013 CATCACCACAATCACAGGCCCGTTTCTATCAATCCGTGGGTTGCTTGTGCTGGTCAGGT- 1071
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 997 CATCACCATAATCACAGGCCCGTTTCGATCAACCCGTGGGTTGCTTGTGCTGGTCAAGTT 1056
Query 1072 GGCTCATGGGCTGAATTTTGAAGCCTTGCGTCCACGATCGTGATTTTTTATTTTAGTGGT 1131
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1057 GG-TCATGGGCTGAATTTTGAAGCCTTGCGTCCACGATCGTGATTTTTAATTT-AGTGG- 1113
Query 1132 GGGAAAAGGGTGTTTTGGTATTTTTCGTTATCGTTATATAGTCTATCTGTGTGGGGTCAT 1191
|| ||| ||||||| |||||||||||||||| ||||| |||||||||||| |||||||
Sbjct 1114 GG-AAA-GGGTGTTCTGGTATTTTTCGTTATTGTTATG--GTCTATCTGTGTAGGGTCAT 1169
Query 1192 TGTAATTTTGGATGATTGGCCTTCTCATGAACTAGTCCTAT-GT---ATG-ATG--C--- 1241
||||||||||||||||||||||||||||||||||||||||| || ||| ||| |
Sbjct 1170 TGTAATTTTGGATGATTGGCCTTCTCATGAACTAGTCCTATAGTCCTATGTATGATCTGC 1229
Query 1242 AACCTTAAAAAGATTTAAATTAGCAAAAATTAGTTACAA 1280
|||||||||| |||||||||||||||||||||||||||
Sbjct 1230 AACCTTAAAAT-ATTTAAATTAGCAAAAATTAGTTACAA 1267
> Ahg946484 jgi|Araly1|946484|scaffold_702713.1
Length=893
Score = 412 bits (223), Expect = 2e-114
Identities = 610/789 (77%), Gaps = 57/789 (7%)
Strand=Plus/Plus
Query 262 CATGATGATGGGCAAAGAAGATCTAGGTTTGAGCCTAAGCTTAGGG-TTTTCACAAAATC 320
|||||||||||| ||||| ||||| ||||| || || ||||| ||| ||| ||||||| |
Sbjct 20 CATGATGATGGGAAAAGAGGATCTGGGTTTAAGTCTTAGCTT-GGGATTTGCACAAAACC 78
Query 321 ACAATCCTCTTCAGATGAATCTGAATCCTAAC-TCTTCAT-TATCAAACAATCTCCAGA- 377
|| ||||||||||| | ||||| || || || ||||||| || |||||||||||
Sbjct 79 ACCATCCTCTTCAGCTAAATCTAAAACC-CACTTCTTCATCAAT-GTCCAATCTCCAGAT 136
Query 378 GACTCCCATGGAACCAAACATTCG----ATCCT---A-CATC---AG----A---TCTTC 419
| | |||||||||||||| || | |||| | |||| || | ||||
Sbjct 137 G-TTTCCATGGAACCAAACTTTTGTTTCTTCCTCAGATCATCAAAAGCAACAGTCTCTTA 195
Query 420 GCAAGATAGACGTGAACAGTTTTCCATCAACGGT-TAACTGCGAGGAAGACACAGGAGTT 478
| || || ||||||||||| || ||| | ||||| | || ||||| || |||||||||
Sbjct 196 GGAAAATCGACGTGAACAGCTTGCCAACGACGGTGGATTTG-GAGGAGGAGACAGGAGTT 254
Query 479 TCGTCACCAAACAGTACGATCTCAAGCACCATTAGCGGGAAGA-GA--AGTGAGAGAGAA 535
|| || ||||||||||||||||| |||||| | ||||| |||| || ||||||||||||
Sbjct 255 TCATCTCCAAACAGTACGATCTCGAGCACCGTGAGCGGCAAGAGGAGGAGTGAGAGAGAA 314
Query 536 GGAATCTCCGGAACCGGCGTTGGCT-CCGGCGACGATCACGACGAGATCACTCCGGATCG 594
|||| |||||| | | ||| | || | || ||| || ||| ||||||| ||| |
Sbjct 315 GGAACCTCCGG----TG-G-TGG-TGCC-G-GA-GATGACCTCGACATCACTCTAGATAG 364
Query 595 AGGGTACTCACGTGGAACCTCAGATGAAGAAGAAG---ACGGGGGCGAAACGTCG-AGGA 650
| | ||||||||||||||| ||||||||||||| |||| || || || | | |||
Sbjct 365 ATCTTCCTCACGTGGAACCTCCGATGAAGAAGAAGATTACGGAGGTGAGAC-TTGTCGGA 423
Query 651 AGAAGCTCAGGTTATCAAAAGATCAGTCTGCTTTTCTCGAAGAGACTTTCAAAGAACACA 710
||||||| ||| |||| |||||||| || || |||||||||| ||||||||||| ||||
Sbjct 424 AGAAGCTTAGGCTATCCAAAGATCAATCCGCAGTTCTCGAAGACACTTTCAAAGAGCACA 483
Query 711 ACACTCTCAATCCCAAACAGAAGCTAGCTTTGGCTAAGAAGCTGA-ACTTGACGGCAAGA 769
| ||||||||||||||||||||||| ||||||||||||||||| | || || ||||||
Sbjct 484 ATACTCTCAATCCCAAACAGAAGCTGGCTTTGGCTAAGAAGCT-AGGTTTAACAGCAAGA 542
Query 770 CAAGTGGAAGTGTGGTTCCAAAACAGAAGAGCTAGAACCAAGTTAAAGCAAACGGAGGTA 829
|||||||||||||||||||||||||||||||| || || || || |||||||| || ||
Sbjct 543 CAAGTGGAAGTGTGGTTCCAAAACAGAAGAGCAAGGACAAAATTGAAGCAAACCGAAGTG 602
Query 830 GATTGCGAATACTTGAA-ACGGTGCGTAGAGAAGCTAACGGAAGAGAACCGGAGACTTC- 887
|||||||| || ||||| | | || |||||||| |||| |||||||| ||| | || |
Sbjct 603 GATTGCGAGTATTTGAAGA-GATGTGTAGAGAAATTAACTGAAGAGAATCGGCGGCT-CG 660
Query 888 AGAAAGAGGCTATGGAGCTTC-GAAC-TCTCAAGCTGTCTCCACAATTCTACGGTCAGAT 945
|||||||||| ||| || || | | | ||||| || || | || || ||||||||
Sbjct 661 AGAAAGAGGCGGCGGAA-TTAAGAGCAT-TAAAGCTTTCACCGCGGTTGTATGGTCAGAT 718
Query 946 GACTCCACCAACTACACTCATCATGTGTCCTTCGTGCGAGCGTGTGGGTGGCCCATCATC 1005
|| ||||||||| || || | |||||||| |||||||| || |||| || ||||| ||
Sbjct 719 GAGTCCACCAACCACTCTTTTGATGTGTCCATCGTGCGAACGAGTGGCCGGACCATCCTC 778
Query 1006 ATCGAACCA 1014
||| |||||
Sbjct 779 ATCTAACCA 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5