BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47380.1
Length=1977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494244 jgi|Araly1|494244|fgenesh2_kg.8__60__AT5G47380.1 2784 0.0
> Ahg494244 jgi|Araly1|494244|fgenesh2_kg.8__60__AT5G47380.1
Length=1963
Score = 2784 bits (1507), Expect = 0.0
Identities = 1791/1926 (93%), Gaps = 27/1926 (1%)
Strand=Plus/Plus
Query 52 TTTTACTGAGATTCTTTTGGAGACTTTG---A-TT---ACT-TTCATCATCTGAGTTTAA 103
||| ||||| ||||| |||||||||||| | || | | ||||||||||| | ||||
Sbjct 43 TTTCACTGATATTCTCTTGGAGACTTTGATCACTTGAGAGTATTCATCATCTGGGCTTAA 102
Query 104 GGTTTTGGCTGAGATATATGGGTGGTTTTGATTTGAATAAAGACGGTAACAAGCAGAGAA 163
||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 103 GGTTTTGGCTGAG----ATGGCTGGTTTTGATTTGAATAAAGACGGTAAAAAGCAGACAA 158
Query 164 GAAACGGAGATTCTTGGCATTGCCTGGATTCTCATAAACATGGCCGCTCTAAAAGTGCGT 223
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 159 AAAACGGAGATTCTTGGCATTGCCCGGATTCTCATAAACATGGACGCTCTAAAAGTGCGT 218
Query 224 CGTCAGAGCGGGATCTTCACACTTCTGGTAATGGAGCTTCACAATCTGCAAACAACTTCA 283
|||||||||| ||||| || |||||||||||||||||||||||||||| |||| |||||
Sbjct 219 CGTCAGAGCGAGATCTCCATGCTTCTGGTAATGGAGCTTCACAATCTGCCAACACCTTCA 278
Query 284 CTAGAATGCAAGCATCCTCTGTTCAAACAACAGCAAACAAGAGACCAAAACCACTGCATA 343
||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 279 CTAGAATGCAAACATCCTTTGTCCAAACAACAGCAAACAAGAGACCAAAACCTCTGCATA 338
Query 344 ATTGTCAGATGTTAACTAAAAACAATGTGTCTTCTAACGACAGAGCATCCTTGGAACGCG 403
|||||||||| |||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 339 ATTGTCAGATATTAATTAAAAACAGTGTGTCTTCGAACGACAGAGCATCCTTGGAACGCG 398
Query 404 ATGTTGAGCAGCTTCACCTTCGTCTTCAACAGGAGAAATCTATGAGAATGGTGTTAGAGA 463
||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 399 ATGTTGAACAGCTACACCTTCGTCTGCAACAAGAGAAATCTATGAGAATGGTGTTAGAGA 458
Query 464 GAGCAATGGGCCGTGCTTCGAGCAGTTTGTCTCCAGGGCACAGACATTTTG-CTGGTCAG 522
|||||||||||||||||||||||||||| ||||| ||||| ||||| |||| ||||||||
Sbjct 459 GAGCAATGGGCCGTGCTTCGAGCAGTTTATCTCCTGGGCATAGACA-TTTGACTGGTCAG 517
Query 523 GCAAATGAACTTATCACGGAGATTGAGTTGCTTGAAGCAGAGGTCACGAATCGCGAGCAT 582
||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 518 GCAAAGGAACTTATCACGGAGATTGAATTGCTTGAAGCAGAGGTCGCGAATCGCGAGCAT 577
Query 583 CATGTGCTTTCTCTATATCGAAGTATATTTGAACAGACAGTAAGCAGAGCACCTTCCGAA 642
|||||||||||||| || || ||||| |||||||||||||||||||||||| |||| |||
Sbjct 578 CATGTGCTTTCTCTCTACCGGAGTATCTTTGAACAGACAGTAAGCAGAGCATCTTCAGAA 637
Query 643 CAAAGCTCAAGCATTTCTTCTCCAGCTCATCATATAAAGCAGCCACCAAGAAAACAAGAC 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 638 CAAAGCTCAAGCATTTCTTCTCCAGCTCATCATATAAAGCAGCCACCAAGAAAAC---AC 694
Query 703 CCAAATGTTATTTCAAATGCATTTTGTTCCTCCAATAATTTCCCTCTAAAGCCGTGGCAT 762
|||| |||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 695 CCAAGTGTTATTTCAAATGCATTTTGTTCCTCCAAGAATTTCCCTCTAAAGCCTTTGCAT 754
Query 763 GCTATGGTTACTCTTAAAGATTCGAGTAGAAAAACTTCCAAAAAGGACCAATCTTCTCAG 822
|||||| ||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 755 GCTATGATTATTTTTAAAGATTCGAGTAGAAAAACCTCCAAAAAGGACCAATCTTCTCAG 814
Query 823 TTCCAGTTCAGAAACTGTATTCCTTCAACAACAAGTTGCTCAAGTCAAGCAAAATCCCAC 882
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 815 TTCCAGTTCAGAAACTGTATTCCTTCAACAACAAGTTGTTCAAGTCAAGCAAAATCTCA- 873
Query 883 TTCTTAAAGGATTCAGTAACAGTGAAGTCTCCATCTCAGAGAACTCTTAAGGATCATTTG 942
| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 874 -T-TTAAAGGATTCAGTGACAGTGAAGTCTCCATCGCAGAGAACTCTAAAGGATCATTTG 931
Query 943 TACCAATGCCCAAACAAGTTGTCTGAAGATATGGTCAAGTGTATGTCTTCAGTGTACTTC 1002
||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct 932 TACCAATGCCCAAACAATTTGTCTGAAGATATGGTCAAGTGTATGGCTTCTGTGTACTTC 991
Query 1003 TGGCTCTGCTGCAGTGCCATGTCAGCAGATCCTGAAAAGAGAATCCTATCAAGATCATCT 1062
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 992 TGGCTCTGCTGCACTGCCATGTCAGCAGATCCTGAAAGGAGAACCCTATCAAGATCATCT 1051
Query 1063 ACTAGCAATGTGATCATCCCCAAGAACATTATGAATGAAGACAGAGCTTGGTCCTGCAGA 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1052 ACTAGCAATGTGATCATCCCCAAGAACATTATGAATGAAGACAGAGCTTGGTCTTGCAGA 1111
Query 1123 TCCATGGTGGAAGTATCTTGGATCTCATCAGACAAGAAAAGATTTTCTCAAGTAACGTAT 1182
|||||||||||||||||||| |||||||||||||||| |||||||||||||| | | |||
Sbjct 1112 TCCATGGTGGAAGTATCTTGTATCTCATCAGACAAGAGAAGATTTTCTCAAGCATCATAT 1171
Query 1183 GCTATCAACAACTATAGGCTCCTTGTTGAACAACTAGAGAGAGTTACTATAAATCAAATG 1242
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 GCTATTAACAACTATAGGCTCCTTGTTGAACAACTAGAGAGAGTTACTATAAATCAAATG 1231
Query 1243 GAAGGCAATGCAAAGTTAGCCTTTTGGATCAACATATACAATGCTCTCCTCATGCATGCA 1302
|||| |||||||||| |||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1232 GAAGACAATGCAAAGCTAGCATTTTGGATCAACATATACAATGCTCTCCTTATGCATGCA 1291
Query 1303 TACTTAGCATATGGTGTACCTGCTCATTCCCTCAGAAGGTTAGCTTTGTTTCACAAGTCT 1362
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1292 TACTTAGCATATGGTGTACCTGCTAATTCCCTCAGAAGGTTAGCTTTGTTTCACAAGTCT 1351
Query 1363 GCGTATAATATCGGTGGGCACATCATCAATGCAAACACCATTGAATACTCTATCTTCTGC 1422
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GCGTATAATATCGGTGGACACATCATCAATGCAAACACCATTGAATACTCTATCTTCTGC 1411
Query 1423 TTCCAGACTCCACGGAATGGACGTTGGCTTGAGACCATTATTTCCACCGCCTTGAGGAAG 1482
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1412 CTCCAGACTCCACGGAATGGACGTTGGCTTGAGATCATTATTTCCACCGCCTTGAGGAAG 1471
Query 1483 AAACCAGCTGAAGATAAAGTAAAG-TCAATGTTTAGCCTTGACAAACCAGAGCCACTTGT 1541
|||| |||||||| |||||||| | |||||||| |||||| |||||||||||||||||||
Sbjct 1472 AAACTAGCTGAAGGTAAAGTAA-GCTCAATGTTCAGCCTTCACAAACCAGAGCCACTTGT 1530
Query 1542 CTGTTTTGCTCTTTGCATTGGTGCTCTATCAGATCCAGTGCTAAAAGCCTACACTGCATC 1601
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1531 CTGTTTTGCTCTTTGCACTGGTGCTCTTTCAGATCCAGTGCTAAAAGCCTACACTGCATC 1590
Query 1602 AAACGTTAAAGAGGAATTAGATGCTTCAAAAAGAGAGTTTCTTGGAGCAAACGTGGTTGT 1661
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1591 AAACGTTAAAGAGGAATTAGAAGCTTCGAAAAGAGAGTTTCTTGGAGCAAACGTGGTTGT 1650
Query 1662 AAAGATGCAGAAGAAAGTGTTATTACCTAAGATTATAGAGAGGTTTACAAAGGAAGCTTC 1721
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1651 AAAGATGCAGAAGAAAGTGTTGTTACCTAAGATTATAGAGAGGTTTACAAAGGAAGCTTC 1710
Query 1722 TCTGAGCTTTGATGACCTGATGAGATGGTTAATAGATAACGCAGACGAAAAGCTTGGAGA 1781
|||||||| |||||| ||||||||||| |||||||| | |||||||||||||||| ||
Sbjct 1711 TCTGAGCTCTGATGATTTGATGAGATGGGTAATAGATTGCTCAGACGAAAAGCTTGGGGA 1770
Query 1782 ATCAATACAAAAATGCGTACAAGGCAAACCAAACAACAAGAAAGCATCGCAGGTCGTCGA 1841
||| |||||||||||||||||||| |||||||||||||||||| | || |||||||| ||
Sbjct 1771 ATCGATACAAAAATGCGTACAAGGTAAACCAAACAACAAGAAATCGTCTCAGGTCGTTGA 1830
Query 1842 ATGGTTGCCATACAGTTCAAAATTCCGTTATGTTTTCTCCAAGGACTTGATGGAGAAAAA 1901
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 1831 ATGGTTGCCATACAGTTCAAAGTTCCGTTACGTTTTCTCAAAGGACTTGATGGAGAAAAA 1890
Query 1902 GCCCTGTGAGACAATGAAAAAGGCTATC--CTTGTGTACAAGAGAAACTATCTTCTTTCC 1959
||| ||||||||||||||||| | ||| ||||||||||||| ||||| || ||| ||
Sbjct 1891 GCCATGTGAGACAATGAAAAATG-TATTTTCTTGTGTACAAGACAAACTGTCA-CTT-CC 1947
Query 1960 CAGACC 1965
||||||
Sbjct 1948 CAGACC 1953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74314067995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5