BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47390.1
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948169 jgi|Araly1|948169|scaffold_800056.1 1986 0.0
> Ahg948169 jgi|Araly1|948169|scaffold_800056.1
Length=1209
Score = 1986 bits (1075), Expect = 0.0
Identities = 1165/1209 (96%), Gaps = 3/1209 (0%)
Strand=Plus/Plus
Query 125 TGCTTCTTCTGCGATCAACTAAGATCCGATCCGCGAGCGTTTCAGACTTCGATCAGATCC 184
||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||||
Sbjct 1 TGCTTCTTCTGCGATCAGCTAAGATCCGATCCACGACCGTTTCAGACTCCGATCAGATCC 60
Query 185 GATTAAGAGAAGCAAATCGGGTCGGGTATGACTCGTCGATGTTCTCACTGCAATCACAAT 244
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATTAAGATAAGCAAATCGGGTCGGGTATGACTCGTCGATGTTCTCACTGCAATCACAAT 120
Query 245 GGCCACAACTCTCGGACTTGTCCCAATCGCGGCGTGAAGCTCTTTGGTGTTCGGCTCACC 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 GGCCACAACTCTCGGACTTGTCCCAATCGCGGCGTGAAGCTCTTTGGTGTTAGGCTCACC 180
Query 305 GAAGGTTCGATCCGGAAAAGTGCAAGTATGGGTAATCTTAGCCATTACACGGGTTCTGGA 364
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GAAGGTTCGATCCGGAAAAGTGCAAGTATGGGTAATCTTAGTCATTACACGGGTTCTGGA 240
Query 365 TCGGGTGGGCATGGAACCGGGTCCAACACTCCGGGTTCTCCGGGTGATGTCCCTGACCAT 424
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TCGGGTGGGCATGGAACCGGGTCCAATACTCCGGGTTCTCCGGGTGATGTCCCTGACCAT 300
Query 425 GTCGCTGGTGATGGTTACGCTTCTGAGGATTTCGTTGCTGGCTCTTCCTCTAGCCGCGAG 484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GTCGCTGGTGATGGTTACGCTTCTGAAGATTTCGTTGCTGGCTCTTCCTCTAGCCGCGAG 360
Query 485 AGAAAGAAAGGAACTCCATGGACAGAGGAAGAACACAGGATGTTCTTATTAGGTTTACAG 544
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AGAAAGAAAGGAACTCCATGGACAGAGGAAGAACATAGGATGTTCTTATTAGGTTTACAG 420
Query 545 AAGCTGGGTAAAGGTGATTGGAGAGGTATCTCAAGAAACTATGTGACCACTAGGACACCT 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGCTGGGTAAAGGTGATTGGAGAGGTATCTCAAGAAACTATGTGACCACTAGGACACCA 480
Query 605 ACACAAGTTGCTAGCCATGCTCAGAAGTATTTCATCAGACAATCCAATGTCTCTCGTCGC 664
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 ACACAAGTTGCTAGCCATGCTCAGAAGTATTTCATCAGACAATCCAATGTGTCTCGTCGC 540
Query 665 AAAAGACGTTCTAGTCTCTTTGATATGGTTCCTGATGAGGTTGGAGATATTCCCATGGAT 724
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 541 AAAAGACGTTCTAGTCTCTTTGATATGGTCCCTGATGAGGTTGGCGATATTCCCATGGAT 600
Query 725 TTGCAAGAACCAGAGGAAGATAATATTCCTGTGGAAACTGAAATGCAAGGTGCTGACTCT 784
|||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 601 TTGCAAGAACCAGAAGCAGATAACATTCCTGTGGAAACTGAAATCCAAGGTGCTGACTCT 660
Query 785 ATTCATCAGACACTTGCTCCTAGCTCACTTCACGCACCGTCAATCTTGGAAATCGAAGAA 844
||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 661 GTTCATCAGACACTTGCTCCGGGCTCACTTCAAGCACCGTCGATCTTGGAAATCGAAGAA 720
Query 845 TGTGAATCAATGGACTCCACAAACTCTACCACCGGGGAACCAACCGCAACTGC--C-GCT 901
|||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||
Sbjct 721 TGTGAATCAATGGACTCCACAAACTCTACCACCGGGGAACCAACTGCAACCGCTGCTGCT 780
Query 902 GCTGCTTCTTCTTCTTCCAGACTAGAAGAAACCACACAACTGCAATCACAACTGCAACCG 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTGCTTCTTCTTCTTCCAGACTAGAAGAAACCACACAACTGCAATCACAACTGCAACCG 840
Query 962 CAGCCGCAACTACCTGGCTCATTCCCCATACTATATCCGACCTACTTTTCACCATATTAC 1021
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 841 CAACCGCAACTACCTGGCTCATTCCCCATACTATATCCGACCTACTTCTCACCGTATTAC 900
Query 1022 CCGTTTCCATTCCCAATATGGCCTGCTGGTTATGTTCCTGAACCACCCAAGAAAGAGGAA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CCGTTTCCATTCCCAATATGGCCTGCTGGTTATGTTCCTGAACCACCCAAGAAAGAGGAA 960
Query 1082 ACTCATGAAATTCTCAGACCAACTGCTGTGCACTCGAAAGCTCCTATCAATGTTGACGAG 1141
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 961 ACTCATGAGATCCTCAGACCAACTGCGGTGCACTCGAAAGCTCCTATCAATGTTGACGAA 1020
Query 1142 CTTCTTGGTATGTCTAAGCTCAGCCTTGCAGAGTCCAACAAACATGGAGAATCCGATCAG 1201
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1021 CTTCTCGGTATGTCTAAGCTCAGCCTTGCAGAGTCCAACAAAAATGGAGAATCCGATCAG 1080
Query 1202 TCTCTTTCATTGAAGCTAGGTGGCGGGTCATCTTCAAGACAATCAGCATTTCACCCGAAT 1261
|||||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 1081 TCTCTTTCGCTGAAGCTAGGTGGTGGGTCATCGTCAAGACAGTCAGCATTTCACCCGAAT 1140
Query 1262 CCTAGCTCTGATAGTTCAGACATCAAAAGCGTGATACACGCTTTATAAAAGACCTGAGGA 1321
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CCTAGCTCTGATAGTTCGGACATCAAAAGCGTGATACACGCTTTATAAAAGACCTGAGGA 1200
Query 1322 AGTGATGGT 1330
||||| |||
Sbjct 1201 AGTGACGGT 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60753940775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5