BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47400.1
Length=2589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915302 jgi|Araly1|915302|Al_scaffold_0008_53 3602 0.0
> Ahg915302 jgi|Araly1|915302|Al_scaffold_0008_53
Length=3165
Score = 3602 bits (1950), Expect = 0.0
Identities = 2186/2301 (95%), Gaps = 12/2301 (1%)
Strand=Plus/Plus
Query 202 ATGCTTCCACACTCCTACACCGTCGATTCGCTTTCGCAATCACAAGACCTAGCTTCAGCT 261
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1 ATGCTTCCACACTCGTACACCGTCGATTCGCTTTCGCAATCTCAAGACCTAGCTTCGGCT 60
Query 262 ATACTCTCAGCTTCCACGCCGTCGAGTATCTCCGCTGCTTGCTCTTCCGTCGAATCGTTT 321
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 61 ATACTCTCAGCTTCCACGCCGTCGAATATCTCCGCTGCTTGTTCTTCCGTCGAATCGTTT 120
Query 322 CTTCAGTCGCATACGCCTGATCAGTGTCGCCATTTCTTCTCTGTTACTTTTCCGAGTTTA 381
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CTTCACTCACATACGCCTGATCAGTGTCGTCATTTCTTCTCTGTTACTTTTCCGAGTTTA 180
Query 382 ATCTGTAAGATCTTCGGTTTCGGCGACACGACCGCGGCATCTCCGGCACAGTCTTCTTCG 441
|| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||
Sbjct 181 ATTTGTAAGATCTTCGGTTTCGGCGACGCGACCGCGGCATCTCCGGCACCGTCTTCGTCG 240
Query 442 CTGCGACCGAACGGTTGGATCGATGTAATCTCGGCGGCCAACGATTTGGATTTAGCGGAG 501
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 CTGCGGCCGAACGGTTGGATCGATGTAATCTCGGCGGCTAACGATTTGGATTTAGCGGAG 300
Query 502 AGAGTATACAATCTCTTATC-CCCTAGTGGAATACTCATGAGCTCAATCTTCGCTGTTGA 560
||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 301 AGAGTATTTAATCTCTTATCACCC-AGTGGAATACTCATGAGCTCAATCTTTGCTGTTGA 359
Query 561 TAAATTAGCTCTTGTTAAGTATGTTTTCCCGACGGAACGTTTACCGGAGTATGCTAGATT 620
||| ||||||||||||||||| ||||| ||||| |||||||||||||| |||||| ||||
Sbjct 360 TAAGTTAGCTCTTGTTAAGTACGTTTTTCCGACCGAACGTTTACCGGAATATGCTCGATT 419
Query 621 CATGCTCTCCAGCGAGAAGGATCGAATTGCGTTATCGAATCTGTGCCCCTTTTTGAAAGG 680
|||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||
Sbjct 420 CATGCTCTCCAGCGAGAAGGATCGAAGCGCCTTATCTAATCTGTGTCCCTTTTTGAAAGG 479
Query 681 TAAAATTGAGGAGGATTCAGTTCGTGGTTCATTGTGTGAAGTTAGGCTAAATGTTTTTGA 740
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 TAAAATTGAGGAGGATTCAGTTCGTGGTTCATTGTATGAAGTTAGGCTAAATGTTTTTGA 539
Query 741 GTATTACATGTTTTGGCTCTCTTATTATCCAGTTTGTAGAGGAAACAATGAGATTTCAGC 800
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 540 GTATTACATGTTTTGGCTCTCTTATTATCCGGTTTGTAGAGGAAACAATGAGAGTTCAGC 599
Query 801 TGTGAATCTGAATCCTATCCAAAAGAGAAACAAGTTTAGGCTAGAGAATTGGACACTTAT 860
|| |||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 600 --TG----TGAATCCTATCCAAAAGAGAAAGATGTTTAAGCTAGAGAATTGGACACTTAT 653
Query 861 CAAAGGTTTTCCAGGGAGTAACAAGCGTGATTCTGATCAGAAATTGGAGTGTAATCTCTA 920
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 654 CAAAGGTTTTCCAGGGAGTAACAAGCGTGATTCTGATCACAAATTGGAGTGTAATCTCTA 713
Query 921 CATAAGGCTTCTTTACTCTTATTTGAAAGCATTTGTTCCTGTTTTCGACTTAAACGCTCA 980
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 714 CTTAAGGCTTCTTTACTCTTATCTGAAAGCATTTGTTCCTGTTTTCGACTTAAACGCACA 773
Query 981 CCAGCCTTATCGTAGTTCTCTTTTGCATTACGGAAATGGGTATGATGGGTCAGTGATGAC 1040
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CCAGCCTTATCGTAGCTCTCTTTTGCATTACGGAAATGGGTATGATGGGTCAGTGATGAC 833
Query 1041 AAGAGCTGAGTTCTTGGTGAATGTTTTCGTGCATTATTGGCTTGTTGAGAATGACTTCTC 1100
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 834 AAGAGCTGAGTTCTTGGTGAATGTGTTCGTGCATTATTGGCTTGTTGAGAATGACTTCTC 893
Query 1101 ACCATTTCCTGTTGTTACGGCTAAATCTTTTGGTGTGGCTCCTCCTTTCCGTTCTGCTGT 1160
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ACCGTTTCCTGTTGTTACGGCTAAATCTTTTGGTGTGGCTCCTCCTTTCCGTTCTGCTGT 953
Query 1161 GGAGGAGATTCCACCTACTTGTGGGTTGGAAGAAGTAGTGAAGTTGCTTGTCAAGTATCT 1220
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 954 GGAGGAGATTCCACCTACTTGTGGGTTGGAAGAAGTAGTTAAGTTGCTTGTCAAGTATCT 1013
Query 1221 GAATTTGAGTTGGGTTACAAGTGGTGTTGGGAGTGAAAACTACATTGAGTATGGCGAGAG 1280
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1014 GAATTTGAGCTGGGTTACAAGTGGTGTTGGGAGTGAAAGCTACATTGAGTATGGCGAGAG 1073
Query 1281 TCCACGGTGGAAGACACCGACTTCAGGATCGTCATCCCATGTCGCGAATTTGAGCCTCAG 1340
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||
Sbjct 1074 TCCACGGTGGAAGACACCGACTTCAGGATCGTCATTCCATGTTGCGAATTTGAGCCTTAG 1133
Query 1341 GCCGCTCACTTCCTGGAACACCCATTTACAGAGGCCGCTTTATCGTTATATATTGAGGAG 1400
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1134 GCCTCTCACTTCCTGGAACACCCATTTACAGAGGCCGCTTTACCGCTATATATTGAGGAG 1193
Query 1401 TTTCTTGTTCTGTCCCATAGGAAGCTCAATTAAGAATGCATCTCAGGTGTTCTCCATCTG 1460
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 1194 TTTCTTGTTCTGTCCCATAGGAAGCTCAATTAAGAATGCATCTCAGGTCTTCACTATCTG 1253
Query 1461 GGTTACGTACCTGGAACCATGGATGATCAGTTTGGATGATTTCTCAGTTTTTGAACCTGC 1520
||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 1254 GGTTATGTACCTGGAACCATGGATGATCAGTTTGGATGATTTCTCAGATCTTGAAGCTGC 1313
Query 1521 TTTAAGTGGATCTGTAAAAGATATGAAAAAGGAAGATTCTTATGAATCACGCGTTTGTGG 1580
||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1314 TTTAAATGGATCTGTAAAAGATGTGAAAAAGGAAGAGTCTTATGAATCACGCGTTTGTGG 1373
Query 1581 ATACACGCCTTTGTGGCAGAGCTATGTGATATCCAATTATCTCTACTATAGTTCTCTGGT 1640
||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1374 ATACACGTCTTTGTGGCAGAGCTATGTTATATCCAATTATCTCTACTACAGTTCTCTGGT 1433
Query 1641 CATGCATTTTATTGGCTTTGCACACAAGTTCCTTCACACAGATCCAGAAATAATAACTCA 1700
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1434 CATGCATTTTATTGGCTTTGCGCACAAGTTCCTTCACACAGATCCAGAAATAATAACTCA 1493
Query 1701 GATGGCTCTTAAGGTGATGAGTACGTTGACATCGTCAAAAGAGCTTTTGGTTCTGATGAA 1760
||||| ||| |||||||||||||| || ||| ||||||||||||||||| ||||||||||
Sbjct 1494 GATGGTTCTGAAGGTGATGAGTACATTAACACCGTCAAAAGAGCTTTTGATTCTGATGAA 1553
Query 1761 GAATATTGATAAAGCCTTTCACTCTAAACAAACTGGACCAGGAAACTCAAAAGTGAACGA 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GAATATTGATAAAGCCTTTCACTCTAAACAAACTGGACCAGGAAACTCAAAAGTGAACGA 1613
Query 1821 ATTGTCTAGATTTTCTCCATCTATCCGTGAGCAGTTGAAGGATTGGGAAGATGGGTTGTG 1880
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1614 ATTGTCTAGATTTGCTCCATCTATCCGTGAGCAATTGAAGGATTGGGAAGATGGGTTGTG 1673
Query 1881 TGAGAGCAACGCTGATGGCTCATACTTGCATGAAAACTGGAACAAAGACTTGAAACTCTT 1940
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1674 TGAGAGCAACGCTGATGGTTCATTCTTGCATGAAAACTGGAACAAAGACTTGAAACTCTT 1733
Query 1941 TAGTGATGGTGAAGATGGCGGACAACAACTGCTTCAGCTATTCATACTGCGGGCAGAAGC 2000
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1734 TAGTGATGGTGAAGATGGCGGACAACAACTGCTTCAGCTATTCATACTGCGAGCAGAAGC 1793
Query 2001 CGAACTGCAAACTGTATCCGATAAAAACCTCACAGAGGCCCTTAAGTGTGTAGATTCACT 2060
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1794 CGAACTGCAAACTGTATCCGAGAAAAACCTCACAGAGGCCCTTAAGTGTGTAGATTCACT 1853
Query 2061 AAAATCAGCGGTTTCCAACTTCTTTGGCGGGCATGTCGTAAAACCAATCGCTTTTTTCCT 2120
||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1854 AAAGTCAGCGGTTTCAAACTTCTTTGGCGGGCATGTCATAAAACCAATCGCTTTTTCCCT 1913
Query 2121 AGAGCCGGACCATCCTCAGAAAAA-CCGTGACGAGCTCTTCAAGCCACGTGGTGCTGGTA 2179
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1914 AGAGCCGGACCATCCTCA-AAAAATCCGTGACGAGCTCTTCAAGCCACGTGGTGCTGGCA 1972
Query 2180 ACCAAACAGCAGGCGGT-GTGAAGTACAAAGGGGACTGGATGACCCGTCCGGTGTCAGAA 2238
|||||| |||||| | | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1973 ACCAAATAGCAGG-GATTGTGAAGTACAAAGGGGACTGGATGACCCGTCCGGTTTCAGAA 2031
Query 2239 GACGAGGTTGCATTGATGGCTAAACTGCTAATCAACATGTCTATTTGGCTCAATGAACGC 2298
||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 2032 GACGAGGTTGCATGGATGGCTAAACTGCTAATCAACATCTCTATCTGGCTCAATGAACGC 2091
Query 2299 CTCGGGCTGAACAAATCTGAGACGAGCAACGACAAGAAAGAGAATTCAGAGTCAGTATCA 2358
||||||||||||||||||||||| | ||| || ||||||||||||||||||||||| |||
Sbjct 2092 CTCGGGCTGAACAAATCTGAGACCAACAAAGAAAAGAAAGAGAATTCAGAGTCAGTGTCA 2151
Query 2359 TATGTAGATGTATCAGGGGAAGATGTGGGAAACGTTGCAGGACCTGGAGATGCTGCGAAG 2418
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 2152 TATGTAGACATATCAGGGGAAGATGTGGGAAACGTTGGTGGACCTGGAGATGCTGCGAGG 2211
Query 2419 ATGCTGTTGCGAGGGATGGTGATGGTATGTGGCACAGTGTTGCAGCTGATGAGAAGATTC 2478
||| ||||||||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2212 ATGATGTTGCGAGGGTTGGTGATGGTATGTGGTACGGTGTTGCAGCTGATGAGAAGATTC 2271
Query 2479 GGGATTCGAGTCAATCTTCGG 2499
||| ||||||| |||||||||
Sbjct 2272 GGGGTTCGAGTAAATCTTCGG 2292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97625297935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5