BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47430.1
Length=3300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494238 jgi|Araly1|494238|fgenesh2_kg.8__54__AT5G47430.1 4383 0.0
Ahg946493 jgi|Araly1|946493|scaffold_702722.1 1491 0.0
> Ahg494238 jgi|Araly1|494238|fgenesh2_kg.8__54__AT5G47430.1
Length=3146
Score = 4383 bits (2373), Expect = 0.0
Identities = 2796/2992 (93%), Gaps = 61/2992 (2%)
Strand=Plus/Plus
Query 334 ATCTGCAGGAACTTTTCCAGGATTCGTTGATTTGGATTGATTTTGCTACACGCGTGGA-G 392
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 191 ATCTGCAGGAACTTGTCCAGGATTCGTAGATTTGGATTGATTTTGCTACACGCGTGGAGG 250
Query 393 TTTCCTTCTGTGAAGTCGAATCAGCGAAATACAAATTTTCAATGGCAATTTATTACAAGT 452
||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 251 TTT-CTTCTGTGAAGTCGAATCAGCGAAGTAAAAATTTTCAATGGCAATTTATTACAAGT 309
Query 453 TTAAGAGTGCAAGGGATTATGATACCATTGCCATGGATGGTCCTTTTATATCCGTCGGTA 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 TTAAGAGTGCAAGGGATTATGATACCATTGCCATGGATGGTCCTTTTATATCCGTCGGTA 369
Query 513 TTCTCAAAGACAAAATTTTCGAAACTAAGCATTTGGGCACTGGTAAAGACCTTGATATTG 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TTCTCAAAGACAAAATTTTCGAAACTAAGCATTTGGGCACTGGTAAAGACCTTGATATTG 429
Query 573 TCGTCTCCAATGCCCAAACTAACGAAGAGTATCTGGATGAAGCAATGTTAATCCCAAAGA 632
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 430 TCGTCTCCAATGCCCAAACTAATGAAGAGTATCTGGATGAAGCAATGTTAATCCCAAAGA 489
Query 633 ATACATCTGTCCTTATTCGTCGGGTTCCTGGACGTCCTCGCATCACAGTTATTACCACAC 692
|||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||
Sbjct 490 ATACATCTGTCCTTATTCGTCGAGTTCCAGGACGCCCTCGCATCACAGTTATCACCACAC 549
Query 693 AAGAGCCTAGAATCCAGAATAAAGTGGAAGACGTTCAGGCTGAAACCACCAATTTTCCTG 752
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 550 CAGAGCCTAGAATCGAGAATAAAGTGGAAAACGTTCAGGCTGAAACCACCAATTTTCCTG 609
Query 753 TTGCTGATCCATCTGCTGCTGAATTTCCTGAAGATGAGTATGACGAGTTTGGGACTGATC 812
|| | ||||||||||| || ||| |||||||||||| | ||||||||||||||||||
Sbjct 610 TTACCGATCCATCTGCCACTAAATATCCTGAAGATGATTGGGACGAGTTTGGGACTGAT- 668
Query 813 TT-TATTCCATTCCTGATACCCAAGATGCCCAGCATATTATT---CCACGTCCTCATCTT 868
|| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 669 TTATATTCCATTCCTGATGCCCAAGATGCCCAGCATATTATTATTCCACGTCCTGATCTT 728
Query 869 GCAACC-GCAGACGACAAAGTAGATGAAGAAAGCAAAATTCAGGCGCTGATTGACACTCC 927
||| || |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 729 GCA-CCAGCAGACGAGAAAGTAGATGAAGAAAGCAAAATCCAGGCACTGATTGACACTCC 787
Query 928 AGCACTTGACTGGCAACAACGACAAGGTCAAGATACTTTTGGAGCTGGTAGAGGTTATGG 987
||||||||||||||||| ||||||||| |||||||| ||| ||||| |||||||| ||
Sbjct 788 AGCACTTGACTGGCAAC---GACAAGGTCCAGATACTTATGGGGCTGGGAGAGGTTACGG 844
Query 988 GAGGGGTATGCCTGGAAGGATGAATGGACGTGGTTTTGGAATGGAAAGGAAAACGCCACC 1047
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 AAGGGGTATGCCTGGAAGGATGAATGGACGTGGTTTTGGAATGGAAAGGAAAACGCCACC 904
Query 1048 TCCAGGTTATGTGTGCCATCGTTGCAATATCCCTGGACATTTTATTCAGCATTGCCCCAC 1107
|||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 905 TCCAGGATATGTGTGCCATCGATGCAATGTCCCTGGACATTTTATTCAGCATTGCCCCAC 964
Query 1108 AAATGGAGACCCTAACTATGATGTTAAGAGAGTTAAGCCACCTACTGGTATCCCCAAGTC 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 AAATGGAGACCCTAACTATGATGTTAAGAGAGTTAAGCCACCTACTGGTATCCCCAAGTC 1024
Query 1168 CATGTTGATGGCGACCCCAGATGGTTCTTATTCCTTGCCAAGTGGCGCAGTTGCAGTTCT 1227
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 CATGTTGATGGCGACCCCTGATGGTTCTTATTCCTTGCCAAGTGGCGCAGTTGCAGTTCT 1084
Query 1228 GAAACCAAATGAGGATGCTTTTGAGAAGGAAATGGAGGGATTGCCATCAACAACACGTTC 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GAAACCAAATGAGGATGCTTTTGAGAAGGAAATGGAGGGATTGCCATCAACAACACGTTC 1144
Query 1288 TGTAGGAGAACTTCCACCTGAGCTAAAATGCCCATTATGCAAAGAAGTGATGAAAGATGC 1347
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1145 TGTAGGAGAACTTCCGCCTGAGCTAAAATGCCCATTATGCAAAGAAGTAATGAAAGATGC 1204
Query 1348 TGCGCTTACAAGCAAATGTTGTTACAAGAGCTTCTGTGACAAGTGTATCAGAGATCACAT 1407
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1205 TGCGCTTACAAGCAAATGTTGTTACAAAAGCTTCTGTGACAAGTGTATCAGAGATCACAT 1264
Query 1408 TATTTCAAAGTCAATGTGTGTTTGTGGAAGATCAGATGTACTTGCTGACGACCTTCTACC 1467
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1265 TATTTCAAAGTCAATGTGTGTTTGTGGAAGACCAGATGTACTTGCTGACGATCTTCTACC 1324
Query 1468 AAACAAGACCCTCAGGGATACCATAAACCGTATTTTGGAAGCTGGAAACGATAGCACTGA 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 AAACAAGACCCTCAGGGATACCATAAACCGTATTTTGGAAGCTGGAAACGATAGCACTGA 1384
Query 1528 GAATGTGGGCAGCGTTGGCCATATCCCAGATTTGGAGTCTGCACGCTGTCCACCTCCCAA 1587
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 GAACGCGGGCAGCGTTGGCCATATCCCAGATTTGGAGTCTGCACGCTGTCCACCTCCCAA 1444
Query 1588 GGCTCTATCTCCTACTACATCTGTTGCATCTAAAGGCGAGAAGAAACCAGTACTTAGTAA 1647
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1445 GGCTCTATCTCCTACTACATCTGTTGCATCTAAAGGCGAGAAGAAACCAGTCCTTAGTAA 1504
Query 1648 CAATAATGATGCTTCAACTTTAAAGGCGCCAATGGAAGTTGCAGAGATCACAAGTGCCCC 1707
|||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||||
Sbjct 1505 CAATAATGATGCTTCAACCTTAAAGCCGCCAATGTATGTTGCAGAGATCACAAGTGCCCC 1564
Query 1708 TCGTGCATCTGCAGAAGTGAATGTAG-AAAAGCCAGTTGATGCATGTGAAAGCACTCAAG 1766
||| |||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||
Sbjct 1565 TCGGGCATCTGCAGAAGTTAATGTGGGAAAA-CCAGTTGATGCATGTGAAAGCACTCAAG 1623
Query 1767 GGTCCGTGATTGTGAAAGAAGCAACAGTGTCAAAGTTGAATACGCAAGCCCCCAAGGAAG 1826
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1624 GGTCCGTGATTGTGAAAGAAGCAACAGTTTCAAAGTTGAATACGCAAGCCCCCAAGGAAG 1683
Query 1827 AAATGCAGCAGCAGGTTGCTGCTGGAGAGCCAGgaaaaaagaagaaaaagaaaCCAAGAG 1886
|| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1684 AAGTGCAGCAGCAGGTTGCTGCTGGAGAGCCAGGAAAAAAGAAGAAAAAAAAAACAAGAG 1743
Query 1887 TGCCTGGGAATG-A--CATGCAATGGAATCCTGTGCCAGATCTAGCAGGCCCTGACTATA 1943
|||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1744 TGCCTGGGAATGCAGACATGCAATGGAATCCTGTGCCAGATCTAGCAGGCACTGACTATA 1803
Query 1944 TGATGCAAATGGGACCAGGTCCGCAGTACTTCAACGGCATGCAACCTGGCTTCAATGGCG 2003
||||||||||||||||||||||||||||||||||||| ||||| || || ||||| ||||
Sbjct 1804 TGATGCAAATGGGACCAGGTCCGCAGTACTTCAACGGAATGCAGCCCGGTTTCAACGGCG 1863
Query 2004 TACAACCAGGCTTCAACGGTGTTCAACCTGGCTTCAATGGCTTTCACCCTGGCTTCAATG 2063
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1864 TCCAACCAGGCTTCAACGGTGTTCAACCTGGCTTCAATGGCTTTCACCCTGGCTTTAATG 1923
Query 2064 GATTTGGAGGCCCGTTTCCAGGCGCAATGCCTCCATTTATGGGTTACGGATTAAACCCAA 2123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1924 GATTTGGAGGCCCGTTTCCAGGCGCAATGCCTCCATTTATGGGTTACGGATTAAACGCAA 1983
Query 2124 TGGACATGGGATTTGGTGGGGGTATGAATATGATGCATCCAGATCCATTCATGGCACAAG 2183
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1984 TGGACATGGGATTTGGTGGGGGTATGAATATGATGCATCCAGATCCATTCATTGCACAAG 2043
Query 2184 GATTTGGGTTCCCTAATATACCACCACCCCATAGGGACCTAGCTGAAATGGGAAACCGAA 2243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2044 GATTTGGGTTCCCTAATATACCACCACCCCATAGGGACCTAGCGGAAATGGGAAACCGAA 2103
Query 2244 TGAATCTCCAACGTGCTATGATGGGCAGAGATGAAGCCGAAGCCCGAAACGCTGAGATGT 2303
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 2104 TGAATCTCCAACGTGCTATGATGGGCAGAGATGAAGCCGAAGCTCGAAATGCTGAGATTT 2163
Query 2304 TAAGAAAACGTGAAAACGAGAGACGACCTGAAGGTGGGAAGATGTTTAGGGATGGAGAGA 2363
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2164 TAAGAAAACGCGAAAACGAGAGACGACCTGAAGGTGGGAAGATGTTTAGGGATGGAGAGA 2223
Query 2364 ATAGCAGAATGATGATGAACAACGGTACTTCAGCCTCTGCATCATCCATCAACCCTAATA 2423
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2224 ATAGCAGAATGATGATGAACAACGGAACTTCAGCCTCGGCATCATCCATCAACCCTAATA 2283
Query 2424 AATCTAGACAAGCACCTCCACCACCAA-TCCACGATTACGATCGCCGGAGACGACCGGAG 2482
||||||||||||| ||||| ||||| | || |||||||||||||||| ||||||||||||
Sbjct 2284 AATCTAGACAAGCCCCTCCTCCACCGACTC-ACGATTACGATCGCCGCAGACGACCGGAG 2342
Query 2483 AAGAGACTATCCCCAGAGCATCCGCCTAC-GCGTAAAAACATTTCCCCGTCTCGCGACTC 2541
| || ||||||||||||||||||| || |||||||| ||| || ||||| ||||| ||
Sbjct 2343 A-GAT--TATCCCCAGAGCATCCGCC-ACCGCGTAAAATCATCTCTCCGTCACGCGATTC 2398
Query 2542 CAAGAGAAAATCCGAGCGTTATCCTGATGAACGAGATCGGCAACGCGACCGTGAGAGGTC 2601
|||||||||||| |||||||||||||| ||||||||||| || ||||||||||| |||||
Sbjct 2399 CAAGAGAAAATCTGAGCGTTATCCTGACGAACGAGATCGTCACCGCGACCGTGAAAGGTC 2458
Query 2602 ACGTCACCAAGA-CGTAGATCGTGAACACGACCGTACTCGCGACCGTCGCGATGAAGACA 2660
||||||||||| | | ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 2459 TCGTCACCAAGATCTT-GATCGTGAACACGACCGCACTCGCGACCGTCGCGATGAAGATA 2517
Query 2661 GAAGCCGAGATCATCGCCACCACCGTGGTGAAACCGAACGCAGCCAACATCA-C-C-ACC 2717
|||||||||| ||||| ||||||||||||||| ||||||||| ||||||||| | | |||
Sbjct 2518 GAAGCCGAGAACATCGTCACCACCGTGGTGAATCCGAACGCAACCAACATCATCACCACC 2577
Query 2718 GCAAGAGATCGGAACCGCCTTCATCGGAGCCACCAGTCCCTGCT--A-CTAAAGCAGAGA 2774
| |||||||||||||| || || ||||||||||||| | |||| | ||||||||||||
Sbjct 2578 GTAAGAGATCGGAACCTCCGTCGTCGGAGCCACCAGGCACTGCCGGAACTAAAGCAGAGA 2637
Query 2775 TCGAGAATAATCTTAAGTCTAGCGTATTCGCTCGGATAAGTTTTCCGGAGGAAGAAACAT 2834
|||| |||| || ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2638 TCGATAATAGTCACAAGTCAAGCGTATTCGCTCGGATAAGTTTCCCGGAGGAAGAAACAT 2697
Query 2835 CTTCTGGTAAACGAAGAAAGGTGCCTTCCTCTTCTTCTACTTCTGTTACGGATCCATCTG 2894
| |||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||
Sbjct 2698 CGTCTGGTAAACGAAGAAAGGTTTCTTCGTCTTCTTCCACTTCTGTGACGGATCCATCTG 2757
Query 2895 CTTCCGCCTCTGCCGCAGCCGCCGTGGGAACATCAGTTCACCGACACAGTAGTCGGAAGG 2954
|| | | |||| ||||||||||| ||||||| ||||||||||||||||
Sbjct 2758 CTAC-G-----GCCG---------TGGGAACATCAATTCACCGTCACAGTAGTCGGAAGG 2802
Query 2955 AAATAGAAGTAGCAGATTATGAATCTAGTGATGAAGATAGGCATTTCAAGAGGAAG---C 3011
||||||||||||||||||||||||| || || |||||||||||||||||||||||| |
Sbjct 2803 AAATAGAAGTAGCAGATTATGAATCGAGCGACGAAGATAGGCATTTCAAGAGGAAGAAGC 2862
Query 3012 CGTCAAGGTACGCGCGATCACCACCGGTGGTGGTTAGTGATGTGAGTGAAGATAAACTCC 3071
| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 2863 CATCAAGGTACGAGCGATCACCACCGGCGGTGGTTAGTGATGTGAGTGAAGATAAACACC 2922
Query 3072 GATACTCAAAACGTGGAAAGGGGGAGAGATCTCGAGCTTGACATGGATTTTCAAACATGt 3131
||||||| |||||||||||||| |||||||||||||||||| |||||||| | |
Sbjct 2923 GATACTCCAAACGTGGAAAGGGAGAGAGATCTCGAGCTTGATTTGGATTTT------T-T 2975
Query 3132 ttttttttttttttGTATAATCAAAAACAGA-GAATGAGAATCTTCTTGTTTTGCTGTAA 3190
| ||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||||
Sbjct 2976 TGTTTTTTTTTTTTGTATAATGAAAAACAGATGA-TGAGAATCTTCTTGTTTTACTGTAA 3034
Query 3191 CGAACAAAG-AGAGAGAGTTCTTTTGTCATCGAATTCttttttaatttttGTAGTGGAAT 3249
||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 3035 CGAACAAAGCAGAGAGAGCTCTTTTGTCATCGAATGCTTTTTTAATTTTTGTAGTGGAAT 3094
Query 3250 TCGATTTCGTAACTACTTTATTCTTAA-TCTATGAGACCAGCGAATTTACAG 3300
||||||||||||||||||||||||||| ||| ||||||||| ||||||||||
Sbjct 3095 TCGATTTCGTAACTACTTTATTCTTAAATCTTTGAGACCAGTGAATTTACAG 3146
Score = 193 bits (104), Expect = 9e-48
Identities = 142/159 (89%), Gaps = 8/159 (5%)
Strand=Plus/Plus
Query 29 TCTTGTGTCCAAACCCTAGATTTCAAGATCGATCTATCTTCTTTCTCGTGAAGACACCGC 88
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TCTGGTGTCCAAACCCTAGATTTCGAGATCGATCTATCTTCTTTCTCGTGAAGACACCG- 59
Query 89 TCTCTACTCGATTCCTATGATTACTCTCTAGATCCTTTTCAATTTCCCCCCGAAAGGT-T 147
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 60 -CTCTGCTCGATTCGTATGATTACTCTCTAGATCCTTTTCAATTTCCCCCGGAA-GGTCT 117
Query 148 TCTCGATTT-TG-ATCCCCCAAATCGGAGCTTGGAGCTA 184
|| | ||| | | |||| |||||||||||||||||||
Sbjct 118 TCCCT-TTTCTACAACCCC-AAATCGGAGCTTGGAGCTA 154
> Ahg946493 jgi|Araly1|946493|scaffold_702722.1
Length=2563
Score = 1491 bits (807), Expect = 0.0
Identities = 1700/2113 (80%), Gaps = 133/2113 (6%)
Strand=Plus/Plus
Query 433 AATGGCAATTTATTACAAGTTTAAGAGTGCAAGGGATTATGATACCAT-TGCCATGGATG 491
|||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 20 AATGGCAATTTATTACAAGTTTAAGAGTGCGAGGGATTATGATACCATCT-CCATGGATG 78
Query 492 GTCCTTTTATATCCGTCGGTATTCTCAAAGACAAAATTTTCGAAACTAAGCATTTGGGCA 551
||||||||||| | || ||| |||||||||| ||||||| |||||||||||||||||| |
Sbjct 79 GTCCTTTTATAACAGTTGGTTTTCTCAAAGAAAAAATTTACGAAACTAAGCATTTGGGAA 138
Query 552 CTGGTAAAGACCTTGATATTGTCGTCTCCAATGCCCAAACTAACGAAGAGTATCTGGATG 611
||||||||||||||| |||||| |||| |||||||||||||| ||||| ||||||||||
Sbjct 139 GTGGTAAAGACCTTGACATTGTCATCTCTAATGCCCAAACTAATGAAGAATATCTGGATG 198
Query 612 AAGCAATGTTAAT-CCCAAAGAATACATCTGTCCTTATTCGTCGGGTTCCTGGACGTCCT 670
||||||||||||| |||||| ||||| ||||| || ||||| ||||| |||||||| |||
Sbjct 199 AAGCAATGTTAATTCCCAAA-AATACTTCTGTTCTAATTCGCCGGGTCCCTGGACGCCCT 257
Query 671 CGCATCACAGTTATTACCACACAAGAGCCTAGAATCCAGAATAAAGTGGAAGACGTTCAG 730
||||||| | ||||||||| || |||||| ||| | || ||||||||||| |||||||
Sbjct 258 CGCATCAGAATTATTACCATACCAGAGCCGAGAGTTGAGGATAAAGTGGAAAACGTTCAA 317
Query 731 GCTGAAACC--ACCAATTTTCCTGTTGCTGATCCATCTGCTGCTGAATTTCCTGAAGATG 788
||||| || | |||| || | ||||||| ||||||||| |||| | ||| ||
Sbjct 318 GCTGA--CCTGAACAATGTTATTACTGCTGATGCATCTGCTGTTGAAGA-C--GAA--TG 370
Query 789 AGTATGACGAGTTTGGGACTGATCTT-TATTCCATTCCTGATACCCAAG-ATGCCCAG-C 845
| |||| | ||||||| |||| || ||||| ||||||||| ||| || | | ||| |
Sbjct 371 GG-ATGA-G--TTTGGGAATGAT-TTGTATTCAATTCCTGATGCCCCAGCA-GTCCATTC 424
Query 846 ATATTATTCC-ACGTCCTCATCTTGCAACCG-CAGACGACAAAGTAGATGAAGAAAGCAA 903
|| || || | ||| | ||| |||| || | || || |||||||||||||||| |||
Sbjct 425 -TAATAA-CCTATGTCATGATCCTGCA-CCAACCGATGATAAAGTAGATGAAGAAACCAA 481
Query 904 AATTCAGGCGCTGATTGACACTCCAGCACTTGACTGGCAACAACGACAAGGT-CAAGATA 962
||| |||| | |||||||| |||||||| |||||||| |||| | | ||| | |||
Sbjct 482 AATAAAGGCATTAATTGACACCCCAGCACTAGACTGGCAGCAAC-A-A-GGTGCG-GATG 537
Query 963 CTTTTGGAGCTGGTAGAGGTTATGGGAGGGGTATGCCTGGAAGGATGAATGGACGTGGTT 1022
|||||| | || ||||||||||||||||||||| ||||||||||| ||| || ||||
Sbjct 538 GTTTTGGCCCGGGCAGAGGTTATGGGAGGGGTATGGCTGGAAGGATGGGTGGCCGCGGTT 597
Query 1023 TTGGAATGGAAAGGAAAACGCCACCTCCAGGTTATGTGTGCCATCGTTGCAATATCCCTG 1082
|||||||||||||||||||||| || ||||| ||||| |||||||| |||||| | |||
Sbjct 598 TTGGAATGGAAAGGAAAACGCCGCCACCAGGCTATGTTTGCCATCGGTGCAATGTTTCTG 657
Query 1083 GACATTTTATTCAGCATTGCCCCACAAATGG-AGACCCTAACTATGATGTTAAGAGAGTT 1141
||||||||||||| || ||| ||||||| || | | ||||| | ||||||||| ||||||
Sbjct 658 GACATTTTATTCAACACTGCTCCACAAACGGTA-ATCCTAATTTTGATGTTAAAAGAGTT 716
Query 1142 AAGCCACCTACTGGTATCCCCAAGTCCATGTTGATGGCGACCCCAGATGGTTCTTATTCC 1201
|| ||||||||||||||||||||||| ||| |||||||||||||| |||| ||||| |||
Sbjct 717 AAACCACCTACTGGTATCCCCAAGTCAATGCTGATGGCGACCCCAAATGGCTCTTACTCC 776
Query 1202 TTGCCAAGTGGCGCAGTTGCAGTTCTGAAACCAAATGAGGATGCTTTTGAGAAGGAAATG 1261
||||||||||||||||| |||||| | ||||||||||||||||| |||||||||||||||
Sbjct 777 TTGCCAAGTGGCGCAGTAGCAGTTTTAAAACCAAATGAGGATGCGTTTGAGAAGGAAATG 836
Query 1262 GAGGGATTGCCATCAACAACACGTTCTGTAGGAGAACTTCCACCTGAGCTAAAATGCCCA 1321
||||||||| ||||||||||||| || || || ||| |||| ||||| |||||||||||
Sbjct 837 GAGGGATTGACATCAACAACACGATCAGTCGGGGAATTTCCTCCTGAATTAAAATGCCCA 896
Query 1322 TTATGCAAAGAAGTGATGAAAGATGCTGCGCTTACAAGCAAATGTTGT-TACAAGAGCTT 1380
|| |||||||||||||||| ||||||||| || |||||||||| ||| | ||||||||
Sbjct 897 TTGTGCAAAGAAGTGATGAGAGATGCTGCACTGGCAAGCAAATGCTGTCT-CAAGAGCTA 955
Query 1381 CTGTGACAAGTGTATCAGAGATCACATTATTTCAAAGTCAATGTGTGTTTGTGGAAG-AT 1439
||||||||||||||| ||||||||||| ||| | ||||||||||||| |||| | | |
Sbjct 956 CTGTGACAAGTGTATTAGAGATCACATCATTGCCAAGTCAATGTGTGCTTGTACA-GCAA 1014
Query 1440 CAGATGTACTTGCTGACGACCTTCTACCAAACAAGACCCTCAGGGATACCATAAACCGTA 1499
| ||||| || ||||| || || || |||||||||||||| |||||||| ||||||||||
Sbjct 1015 CTGATGTCCTAGCTGATGATCTGCTTCCAAACAAGACCCTAAGGGATACTATAAACCGTA 1074
Query 1500 TTTTGGAAG-CTGGAAAC-GATAGCACTGAGAATG-TGGGCAGCGT-TGGCCATATCCCA 1555
| ||||| | |||| ||| | ||| ||||||| | ||| |||| | || | | ||| |
Sbjct 1075 TCTTGGA-GTCTGGTAACAG-TAGTGCTGAGAACGCTGG-CAGCATGTGTCAAG-TCCAA 1130
Query 1556 GATTTGGAGTCTGCACGCTGTCCACCTCCCAAGGCTCTATCTCCTACTACATCTGTTGCA 1615
||| ||||||||||||| |||||||||||||||| | ||||||||||||| |||| ||||
Sbjct 1131 GATATGGAGTCTGCACGGTGTCCACCTCCCAAGGTTTTATCTCCTACTACGTCTGCTGCA 1190
Query 1616 TCTA-AAGGCGAGAAGAAACCAG-TACTTAGTAACAATAATGATGCTT-CAACTTTAAAG 1672
||| ||| ||| |||||||||| | || |||||||| ||||| | || ||||| |||||
Sbjct 1191 TCTGGAAG-CGAAAAGAAACCAGCTCCT-AGTAACAACAATGA-GATTTCAACTCTAAAG 1247
Query 1673 GCGCCAATGGAAGTTGCAG-AGATCACAAGTGCCCCTCGTGCATCTGCAGAAGT-G--AA 1728
|| |||| ||| | | | ||||||||||| | ||||| || ||||||||| | | ||
Sbjct 1248 CCGTCAATAGAAATA-CTGGAGATCACAAGTACTCCTCGGGCGTCTGCAGAAATAGTTAA 1306
Query 1729 TGTAGAAAAGCCAGTTGATGCATGTGAAAGCACTCAAGGGTCCGTGAT-TGTGAAAG-AA 1786
|| ||||||||||||||||||| ||||| || |||||| ||| | | || | ||| ||
Sbjct 1307 AGTGGAAAAGCCAGTTGATGCATCTGAAAACATTCAAGGATCC-TCAAATG-GCAAGGAA 1364
Query 1787 GCAACAGTGTCA-AAGTTGAATACGCAAGCCCCCAAGGAAGAAATGCAGCAGCAGGTTGC 1845
||| |||| ||| || | |||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 1365 GCAGCAGTTTCACAACT-GAATGCGCAGGCCCCCAAGGAAGAAATGCCGCAGCAGGTTGC 1423
Query 1846 TGCTGGAGAGCCAGgaaaaaagaagaaaaagaaaCCAAGAGTGCCTGGGAATGACATGCA 1905
| |||| |||| |||||||| |||||| |||||||| | | || | |||| ||
Sbjct 1424 TTCTGGGGAGCAAGGAAAAAGGAAGAAGAAGAAACC-----T-C--GG-A-TGAC-TG-- 1470
Query 1906 ATGGAATCCTGTGCCAGATCTAGCAGGCCCTGACTATATGATGCAAATGGGACCAGGTCC 1965
| || || | | |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1471 --G-AA-CC-G----A--TCTAGCAGGCCCTGACTATATGATGCCCATGGGTCCAGGTCC 1519
Query 1966 -G-----CAGTACTTCAACGGCATGCAACCTGGCTTCAATGGCGTACAACCA-GGCTTCA 2018
| ||||||||||| || ||||||| |||||||| ||||| |||| | || ||||
Sbjct 1520 CGGTAATCAGTACTTCAATGGTTTGCAACCCGGCTTCAACGGCGTCCAAC-ATGGGTTCA 1578
Query 2019 ACGGTGTTCAACCTGGCTTCAATGGCTTTCACCCTGGCTTCAATGGATTTGGAGGCCCGT 2078
| || ||||||||||| |||||||||||||| | ||| |||||||| ||| |||||| |
Sbjct 1579 ATGGCGTTCAACCTGGGTTCAATGGCTTTCATCATGGTTTCAATGGGTTTCCAGGCCCTT 1638
Query 2079 TTCCAGGCGCAATGCCTCCATTTATGGGTTACGGATTAAACCCAATGGACATGG-GATTT 2137
|||| || || |||||||| ||| | || || |||||| ||| ||||||||| | |||
Sbjct 1639 TTCCTGGTGCGATGCCTCCTTTTGTTGGCTATGGATTAGGCCCCATGGACATGTCG-TTT 1697
Query 2138 GGTGGGGGTATGAATATGATGCATCCAGATCCATT--CATGGCACAAGGATTTGGGTTCC 2195
|| || | | | ||||||||||||||| || | || |||| || || |||||||
Sbjct 1698 GGCGG---T--G--T--GATGCATCCAGATCCTTTTGC-TG-CACAGGGCTTCGGGTTCC 1746
Query 2196 CTAATATACCACCACCCCATAGGGACCTAGCTGAAATGGGAAACCGAATGAATCTCCAAC 2255
| ||||||| |||||| |||||||||| || || ||||| || || ||||||||||| |
Sbjct 1747 CAAATATACGACCACCTTATAGGGACCTTGCGGAGATGGGGAATCGTATGAATCTCCAGC 1806
Query 2256 GTGCTATGATGGGCAGAGATGAAGCCGAAGCCC-GAAACGCTGAGATGTTAAGAAAACGT 2314
| |||| ||||| ||||| ||| |||||| |||| ||||||||| |||||| |||
Sbjct 1807 ATCCTATAATGGGGAGAGAAGAATTTGAAGCCAAGAAA-GCTGAGATGAAAAGAAAGCGT 1865
Query 2315 GAAAACGAGAGACGACCTGAAGGTGGGAA-GAT-GTTTAGGGATGGAGAGAATAGCAGAA 2372
|| ||||||||||| | ||||| ||||| | | || ||||| || || || |||||||
Sbjct 1866 GACAACGAGAGACGGTCAGAAGGAGGGAATG-TCGTC-AGGGACGGTGAAAAGAGCAGAA 1923
Query 2373 TGATGATGAACAACGGTACTTCAGCCTCTG-CATCATCCATCAACCCTAATAAATCTAGA 2431
| | ||||||||| | | |||| ||| | ||| |||| || || || || ||||||
Sbjct 1924 T-A--ATGAACAAC--T-CGGCAGCATCTTTC-TCACCCATGAAGCC-AA-AA-TCTAGA 1973
Query 2432 CAAGCACCTCCACCACCAATC-CA-CG-ATTACGATCGCCGGAGACGACCGGAGAAGAGA 2488
|||| |||||||||||| || | || |||| || || || || ||| |||||| ||
Sbjct 1974 CAAGGACCTCCACCACCGATTTCGTCGGATTATGACCGTCGCAGGCGATCGGAGA-GAT- 2031
Query 2489 CTATCCCCAGAGC 2501
|||| |||||||
Sbjct 2032 -TATCACCAGAGC 2043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124562436429
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5