BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G47435.2

Length=1532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494236 jgi|Araly1|494236|fgenesh2_kg.8__52__AT5G47435.2          2342    0.0  
  Ahg890488 jgi|Araly1|890488|Al_scaffold_0007_2474                    111    1e-23


> Ahg494236 jgi|Araly1|494236|fgenesh2_kg.8__52__AT5G47435.2
Length=1496

 Score = 2342 bits (1268),  Expect = 0.0
 Identities = 1418/1491 (95%), Gaps = 7/1491 (0%)
 Strand=Plus/Plus

Query  35    CGGTGAGGCTGAGGCTGAGGCGGAGATT--GAGAGAGACCAACCATGATACGACGAATCA  92
             ||||| || ||||||| |||||||||||  ||||||||||||||||||||||||||||| 
Sbjct  10    CGGTGCGG-TGAGGCTCAGGCGGAGATTGAGAGAGAGACCAACCATGATACGACGAATCT  68

Query  93    CCGAGAGAGCTTCTGGTTTCGCTAAGAATATTCCGATTCTCAAATCGTCTCGATTTCACG  152
             |||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct  69    CCGAGAGAGCTTCTAGTTTCGCTAAGAATTTTCCAATTCTCAAAGCGTCTCGATTTCACG  128

Query  153   GCGAGTCCCTCGATTCCTCCGTCTCCCCTGTTCTCATTCCCGGCGTCCATGTCTTCCATT  212
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  129   GCGAGTCCCTCGATTCCTCCGTCTCCCCTGTTCTCATCCCCGGCGTCCATGTCTTCCATT  188

Query  213   GTCAGGATGCTGTTGGGATTGTAGCTAAACTATCAGATTGCATAGCAGCAAAAGGTGGCA  272
             |||||||||||||||| |||||||| |||||||||||||| || || |||||||||||||
Sbjct  189   GTCAGGATGCTGTTGGAATTGTAGCAAAACTATCAGATTGTATTGCTGCAAAAGGTGGCA  248

Query  273   ACATTCTTGGCTACGATGTTTTTGTTCCTGAAAACAACAACGTCTTCTACTCTCGCAGCG  332
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  249   ACATTCTTGGCTACGATGTTTTTGTTCCTGAAAACAACAACGTCTTCTACTCTCGCAGTG  308

Query  333   AGTTTATCTTTGATCCGGTTAAATGGCCGAGAAGCCAAGTGGATGAAGATTTTCAAACTA  392
             ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  309   AGTTTATATTTGATCCGGTTAAATGGCCGAGAAACCAAGTGGATGAAGATTTTCAAACTA  368

Query  393   TTGCACAAAGATACGGTGCCTTGAATTCAGTTGTGCGTGTGCCTTCTATTGATCCTAAGT  452
             |||||||||||||||||||||||||||| |||||||||||||||||||| || || ||||
Sbjct  369   TTGCACAAAGATACGGTGCCTTGAATTCGGTTGTGCGTGTGCCTTCTATAGACCCCAAGT  428

Query  453   ATAAGATAGCTCTTCTTCTTTCAAAACAGGATCATTGTCTTGTCGAAATGTTGCATAAAT  512
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  429   ATAAGATAGCTCTTCTACTTTCAAAACAGGATCATTGTCTTGTCGAAATGTTGCATAAAT  488

Query  513   GGCAGGACGGGAAACTCCCTGTGGATATTACCTGTGTGATAAGCAATCATGAAAGAGCTT  572
             ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |
Sbjct  489   GGCAGGACGGGAAACTCCCAGTCGATATCACCTGTGTGATAAGCAATCATGAAAGAGCAT  548

Query  573   CAAACACTCACGTTATGCGGTTTCTTGAGAGGCATGGCATCCCTTATCATTATGTATCTA  632
             | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct  549   CTAACACTCACGTTATGCGGTTTCTTGAGAGGCATGGCATCCCGTATCATTATGTATCGA  608

Query  633   CAACTAAAGAGAATAAAAGAGAAGATGATATTTTGGAATTGGTTAAGGACACTGATTTCC  692
             |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct  609   CAACTAAAGAGAATAAAAGAGAAGATGACATTTTGGAATTGGTTAAAGACACTGATTTCC  668

Query  693   TAGTTCTTGCTAGATATATGCAGATTTTATCGGGTAACTTTTTGAAAGGTTATGGAAAGG  752
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  669   TAGTTCTTGCTAGATACATGCAGATTTTATCGGGTAACTTTTTGAAAGGTTATGGAAAGG  728

Query  753   ATGTAATCAACATCCACCATGGTCTCTTACCATCATTTAAGGGTGGATATCCCGCAAAAC  812
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  729   ATGTAATCAACATCCACCATGGTCTCTTACCATCATTTAAGGGTGGATATCCCGCAAAAC  788

Query  813   AGGCATTCGACGCTGGTGTGAAACTAATTGGAGCCACTAGTCACTTTGTTACCGAGGAAC  872
             ||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  789   AGGCATTTGATGCTGGTGTGAAACTAATTGGAGCAACTAGTCACTTTGTTACCGAGGAAC  848

Query  873   TTGATTCAGGGCCAATTATTGAACAAATGGTTGAGAGTGTTTCCCACCGAGACAACTTAA  932
             ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct  849   TTGATTCAGGGCCTATTATTGAACAAATGGTTGAGAGTGTTTCTCACCGAGACAACCTAA  908

Query  933   GGAGCTTTGTCCAGAAATCCGAGGACCTAGAGAAAAAATGCCTCACGAGAGCTATAAAAT  992
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  909   GGAGCTTTGTCCAGAAATCCGAGGACCTAGAGAAAAAATGCCTCACGAAAGCTATAAAAT  968

Query  993   CTTACTGCGAACTAAGGGTATTACCTTATGGTACAAACAAGACTGTTGTATTCTAGTTAA  1052
             |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  969   CTTACTGCGAACTACGGGTATTACCTTATGGCACAAACAAGACTGTTGTATTCTAGTTAA  1028

Query  1053  GAAAGCAATAACTACGATTCTCATCTGATTCTTTGTTTGAAC-ATCTCAAGAAAAGGATT  1111
             ||||||||| |||| ||||||||||||||| ||||| ||||| | ||||||| |||||||
Sbjct  1029  GAAAGCAATGACTAAGATTCTCATCTGATTTTTTGTATGAACTA-CTCAAGAGAAGGATT  1087

Query  1112  CTCTATCGCATGCGATTGCTGAGACTCAGAGATTCCAGAGAGCATTTGGCAGCCTCGAGG  1171
             |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct  1088  CTCTATCGCATGCGATCGCTGAAACTCAGAGATTCCAGAGAGCATTTGGCAGCCTCAAGG  1147

Query  1172  CAACTTACTAAGCGGAGATTAGACTGAATCCCAGCAACCCATCTCTGCTTCTGAATCTTG  1231
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1148  CAACTTACTAAGCGGAGATTAGACTGAATCCCAGCAACCCATCTCTGCTTCTGAATCTTA  1207

Query  1232  CTCTTGCACTTGAACTCTAAAAGACCCTGTCCTGTTTTCAGACCAAAATAGACTTCTTCG  1291
             ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  1208  CTCTTGCACTTGAACTCTAAAAGGCCGTGTCCTGTTTTCAGACCAAAATAGACTTCTTCG  1267

Query  1292  GAATTTTCCCTCTCTTTCCTGCAAGGCCATGCAGATATCTCGTCGCAGACTCCATAAACA  1351
             ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct  1268  GAATTTTCCCTCTCTTTCCTGTAAGGCCATGCACATATCTCGTCGCAGACTGCATAAACA  1327

Query  1352  ACACCTTTGAAAGCAACAACAAGCTTCAGACTTCCGTGTTTCAAGTAATTTCCCTAACTC  1411
             || ||||  |||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1328  ACGCCTTCAAAAGTATCAACAAGCTTCAGACTTCCGTGTTTCAAGTAATTTCCCTAACTC  1387

Query  1412  TTGAAAGAATaaaaaaaTGCTTACATTTGATCTTCTTGGAGAATGCCCCTCCAACATGTT  1471
             |||||| || |||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct  1388  TTGAAA-AAGAAAAAA-TGCTTACATTTGATCTTCTTGGAGAAAGCCCCTCCAACGTGTT  1445

Query  1472  TGCTTTTGAGTTTGATCATGACCTGAGAAATTCATAGAGGTTAAGTAACTA  1522
             ||||||||||||| ||||||||||| || ||||||| ||||||||||||||
Sbjct  1446  TGCTTTTGAGTTTTATCATGACCTGGGACATTCATATAGGTTAAGTAACTA  1496


> Ahg890488 jgi|Araly1|890488|Al_scaffold_0007_2474
Length=1218

 Score =  111 bits (60),  Expect = 1e-23
 Identities = 64/66 (97%), Gaps = 0/66 (0%)
 Strand=Plus/Minus

Query  1434  ACATTTGATCTTCTTGGAGAATGCCCCTCCAACATGTTTGCTTTTGAGTTTGATCATGAC  1493
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct  981   ACATTTGATCTTCTTGGAGAATGCCCCTCCAACATGTTTACTTTTGAGTTTGATCATTAC  922

Query  1494  CTGAGA  1499
             ||||||
Sbjct  921   CTGAGA  916



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57363908970


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5