BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47435.2
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494236 jgi|Araly1|494236|fgenesh2_kg.8__52__AT5G47435.2 2342 0.0
Ahg890488 jgi|Araly1|890488|Al_scaffold_0007_2474 111 1e-23
> Ahg494236 jgi|Araly1|494236|fgenesh2_kg.8__52__AT5G47435.2
Length=1496
Score = 2342 bits (1268), Expect = 0.0
Identities = 1418/1491 (95%), Gaps = 7/1491 (0%)
Strand=Plus/Plus
Query 35 CGGTGAGGCTGAGGCTGAGGCGGAGATT--GAGAGAGACCAACCATGATACGACGAATCA 92
||||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 10 CGGTGCGG-TGAGGCTCAGGCGGAGATTGAGAGAGAGACCAACCATGATACGACGAATCT 68
Query 93 CCGAGAGAGCTTCTGGTTTCGCTAAGAATATTCCGATTCTCAAATCGTCTCGATTTCACG 152
|||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 69 CCGAGAGAGCTTCTAGTTTCGCTAAGAATTTTCCAATTCTCAAAGCGTCTCGATTTCACG 128
Query 153 GCGAGTCCCTCGATTCCTCCGTCTCCCCTGTTCTCATTCCCGGCGTCCATGTCTTCCATT 212
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 129 GCGAGTCCCTCGATTCCTCCGTCTCCCCTGTTCTCATCCCCGGCGTCCATGTCTTCCATT 188
Query 213 GTCAGGATGCTGTTGGGATTGTAGCTAAACTATCAGATTGCATAGCAGCAAAAGGTGGCA 272
|||||||||||||||| |||||||| |||||||||||||| || || |||||||||||||
Sbjct 189 GTCAGGATGCTGTTGGAATTGTAGCAAAACTATCAGATTGTATTGCTGCAAAAGGTGGCA 248
Query 273 ACATTCTTGGCTACGATGTTTTTGTTCCTGAAAACAACAACGTCTTCTACTCTCGCAGCG 332
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 249 ACATTCTTGGCTACGATGTTTTTGTTCCTGAAAACAACAACGTCTTCTACTCTCGCAGTG 308
Query 333 AGTTTATCTTTGATCCGGTTAAATGGCCGAGAAGCCAAGTGGATGAAGATTTTCAAACTA 392
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 309 AGTTTATATTTGATCCGGTTAAATGGCCGAGAAACCAAGTGGATGAAGATTTTCAAACTA 368
Query 393 TTGCACAAAGATACGGTGCCTTGAATTCAGTTGTGCGTGTGCCTTCTATTGATCCTAAGT 452
|||||||||||||||||||||||||||| |||||||||||||||||||| || || ||||
Sbjct 369 TTGCACAAAGATACGGTGCCTTGAATTCGGTTGTGCGTGTGCCTTCTATAGACCCCAAGT 428
Query 453 ATAAGATAGCTCTTCTTCTTTCAAAACAGGATCATTGTCTTGTCGAAATGTTGCATAAAT 512
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ATAAGATAGCTCTTCTACTTTCAAAACAGGATCATTGTCTTGTCGAAATGTTGCATAAAT 488
Query 513 GGCAGGACGGGAAACTCCCTGTGGATATTACCTGTGTGATAAGCAATCATGAAAGAGCTT 572
||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |
Sbjct 489 GGCAGGACGGGAAACTCCCAGTCGATATCACCTGTGTGATAAGCAATCATGAAAGAGCAT 548
Query 573 CAAACACTCACGTTATGCGGTTTCTTGAGAGGCATGGCATCCCTTATCATTATGTATCTA 632
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 549 CTAACACTCACGTTATGCGGTTTCTTGAGAGGCATGGCATCCCGTATCATTATGTATCGA 608
Query 633 CAACTAAAGAGAATAAAAGAGAAGATGATATTTTGGAATTGGTTAAGGACACTGATTTCC 692
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 609 CAACTAAAGAGAATAAAAGAGAAGATGACATTTTGGAATTGGTTAAAGACACTGATTTCC 668
Query 693 TAGTTCTTGCTAGATATATGCAGATTTTATCGGGTAACTTTTTGAAAGGTTATGGAAAGG 752
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TAGTTCTTGCTAGATACATGCAGATTTTATCGGGTAACTTTTTGAAAGGTTATGGAAAGG 728
Query 753 ATGTAATCAACATCCACCATGGTCTCTTACCATCATTTAAGGGTGGATATCCCGCAAAAC 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 ATGTAATCAACATCCACCATGGTCTCTTACCATCATTTAAGGGTGGATATCCCGCAAAAC 788
Query 813 AGGCATTCGACGCTGGTGTGAAACTAATTGGAGCCACTAGTCACTTTGTTACCGAGGAAC 872
||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 789 AGGCATTTGATGCTGGTGTGAAACTAATTGGAGCAACTAGTCACTTTGTTACCGAGGAAC 848
Query 873 TTGATTCAGGGCCAATTATTGAACAAATGGTTGAGAGTGTTTCCCACCGAGACAACTTAA 932
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 849 TTGATTCAGGGCCTATTATTGAACAAATGGTTGAGAGTGTTTCTCACCGAGACAACCTAA 908
Query 933 GGAGCTTTGTCCAGAAATCCGAGGACCTAGAGAAAAAATGCCTCACGAGAGCTATAAAAT 992
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 909 GGAGCTTTGTCCAGAAATCCGAGGACCTAGAGAAAAAATGCCTCACGAAAGCTATAAAAT 968
Query 993 CTTACTGCGAACTAAGGGTATTACCTTATGGTACAAACAAGACTGTTGTATTCTAGTTAA 1052
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 969 CTTACTGCGAACTACGGGTATTACCTTATGGCACAAACAAGACTGTTGTATTCTAGTTAA 1028
Query 1053 GAAAGCAATAACTACGATTCTCATCTGATTCTTTGTTTGAAC-ATCTCAAGAAAAGGATT 1111
||||||||| |||| ||||||||||||||| ||||| ||||| | ||||||| |||||||
Sbjct 1029 GAAAGCAATGACTAAGATTCTCATCTGATTTTTTGTATGAACTA-CTCAAGAGAAGGATT 1087
Query 1112 CTCTATCGCATGCGATTGCTGAGACTCAGAGATTCCAGAGAGCATTTGGCAGCCTCGAGG 1171
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1088 CTCTATCGCATGCGATCGCTGAAACTCAGAGATTCCAGAGAGCATTTGGCAGCCTCAAGG 1147
Query 1172 CAACTTACTAAGCGGAGATTAGACTGAATCCCAGCAACCCATCTCTGCTTCTGAATCTTG 1231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 CAACTTACTAAGCGGAGATTAGACTGAATCCCAGCAACCCATCTCTGCTTCTGAATCTTA 1207
Query 1232 CTCTTGCACTTGAACTCTAAAAGACCCTGTCCTGTTTTCAGACCAAAATAGACTTCTTCG 1291
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1208 CTCTTGCACTTGAACTCTAAAAGGCCGTGTCCTGTTTTCAGACCAAAATAGACTTCTTCG 1267
Query 1292 GAATTTTCCCTCTCTTTCCTGCAAGGCCATGCAGATATCTCGTCGCAGACTCCATAAACA 1351
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 1268 GAATTTTCCCTCTCTTTCCTGTAAGGCCATGCACATATCTCGTCGCAGACTGCATAAACA 1327
Query 1352 ACACCTTTGAAAGCAACAACAAGCTTCAGACTTCCGTGTTTCAAGTAATTTCCCTAACTC 1411
|| |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 ACGCCTTCAAAAGTATCAACAAGCTTCAGACTTCCGTGTTTCAAGTAATTTCCCTAACTC 1387
Query 1412 TTGAAAGAATaaaaaaaTGCTTACATTTGATCTTCTTGGAGAATGCCCCTCCAACATGTT 1471
|||||| || |||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1388 TTGAAA-AAGAAAAAA-TGCTTACATTTGATCTTCTTGGAGAAAGCCCCTCCAACGTGTT 1445
Query 1472 TGCTTTTGAGTTTGATCATGACCTGAGAAATTCATAGAGGTTAAGTAACTA 1522
||||||||||||| ||||||||||| || ||||||| ||||||||||||||
Sbjct 1446 TGCTTTTGAGTTTTATCATGACCTGGGACATTCATATAGGTTAAGTAACTA 1496
> Ahg890488 jgi|Araly1|890488|Al_scaffold_0007_2474
Length=1218
Score = 111 bits (60), Expect = 1e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 1434 ACATTTGATCTTCTTGGAGAATGCCCCTCCAACATGTTTGCTTTTGAGTTTGATCATGAC 1493
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 981 ACATTTGATCTTCTTGGAGAATGCCCCTCCAACATGTTTACTTTTGAGTTTGATCATTAC 922
Query 1494 CTGAGA 1499
||||||
Sbjct 921 CTGAGA 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5