BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47435.2 Length=1532 Score E Sequences producing significant alignments: (Bits) Value Ahg494236 jgi|Araly1|494236|fgenesh2_kg.8__52__AT5G47435.2 2342 0.0 Ahg890488 jgi|Araly1|890488|Al_scaffold_0007_2474 111 1e-23 > Ahg494236 jgi|Araly1|494236|fgenesh2_kg.8__52__AT5G47435.2 Length=1496 Score = 2342 bits (1268), Expect = 0.0 Identities = 1418/1491 (95%), Gaps = 7/1491 (0%) Strand=Plus/Plus Query 35 CGGTGAGGCTGAGGCTGAGGCGGAGATT--GAGAGAGACCAACCATGATACGACGAATCA 92 ||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 10 CGGTGCGG-TGAGGCTCAGGCGGAGATTGAGAGAGAGACCAACCATGATACGACGAATCT 68 Query 93 CCGAGAGAGCTTCTGGTTTCGCTAAGAATATTCCGATTCTCAAATCGTCTCGATTTCACG 152 |||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||||| Sbjct 69 CCGAGAGAGCTTCTAGTTTCGCTAAGAATTTTCCAATTCTCAAAGCGTCTCGATTTCACG 128 Query 153 GCGAGTCCCTCGATTCCTCCGTCTCCCCTGTTCTCATTCCCGGCGTCCATGTCTTCCATT 212 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 129 GCGAGTCCCTCGATTCCTCCGTCTCCCCTGTTCTCATCCCCGGCGTCCATGTCTTCCATT 188 Query 213 GTCAGGATGCTGTTGGGATTGTAGCTAAACTATCAGATTGCATAGCAGCAAAAGGTGGCA 272 |||||||||||||||| |||||||| |||||||||||||| || || ||||||||||||| Sbjct 189 GTCAGGATGCTGTTGGAATTGTAGCAAAACTATCAGATTGTATTGCTGCAAAAGGTGGCA 248 Query 273 ACATTCTTGGCTACGATGTTTTTGTTCCTGAAAACAACAACGTCTTCTACTCTCGCAGCG 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 249 ACATTCTTGGCTACGATGTTTTTGTTCCTGAAAACAACAACGTCTTCTACTCTCGCAGTG 308 Query 333 AGTTTATCTTTGATCCGGTTAAATGGCCGAGAAGCCAAGTGGATGAAGATTTTCAAACTA 392 ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 309 AGTTTATATTTGATCCGGTTAAATGGCCGAGAAACCAAGTGGATGAAGATTTTCAAACTA 368 Query 393 TTGCACAAAGATACGGTGCCTTGAATTCAGTTGTGCGTGTGCCTTCTATTGATCCTAAGT 452 |||||||||||||||||||||||||||| |||||||||||||||||||| || || |||| Sbjct 369 TTGCACAAAGATACGGTGCCTTGAATTCGGTTGTGCGTGTGCCTTCTATAGACCCCAAGT 428 Query 453 ATAAGATAGCTCTTCTTCTTTCAAAACAGGATCATTGTCTTGTCGAAATGTTGCATAAAT 512 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 ATAAGATAGCTCTTCTACTTTCAAAACAGGATCATTGTCTTGTCGAAATGTTGCATAAAT 488 Query 513 GGCAGGACGGGAAACTCCCTGTGGATATTACCTGTGTGATAAGCAATCATGAAAGAGCTT 572 ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| | Sbjct 489 GGCAGGACGGGAAACTCCCAGTCGATATCACCTGTGTGATAAGCAATCATGAAAGAGCAT 548 Query 573 CAAACACTCACGTTATGCGGTTTCTTGAGAGGCATGGCATCCCTTATCATTATGTATCTA 632 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 549 CTAACACTCACGTTATGCGGTTTCTTGAGAGGCATGGCATCCCGTATCATTATGTATCGA 608 Query 633 CAACTAAAGAGAATAAAAGAGAAGATGATATTTTGGAATTGGTTAAGGACACTGATTTCC 692 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 609 CAACTAAAGAGAATAAAAGAGAAGATGACATTTTGGAATTGGTTAAAGACACTGATTTCC 668 Query 693 TAGTTCTTGCTAGATATATGCAGATTTTATCGGGTAACTTTTTGAAAGGTTATGGAAAGG 752 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 TAGTTCTTGCTAGATACATGCAGATTTTATCGGGTAACTTTTTGAAAGGTTATGGAAAGG 728 Query 753 ATGTAATCAACATCCACCATGGTCTCTTACCATCATTTAAGGGTGGATATCCCGCAAAAC 812 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 ATGTAATCAACATCCACCATGGTCTCTTACCATCATTTAAGGGTGGATATCCCGCAAAAC 788 Query 813 AGGCATTCGACGCTGGTGTGAAACTAATTGGAGCCACTAGTCACTTTGTTACCGAGGAAC 872 ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 789 AGGCATTTGATGCTGGTGTGAAACTAATTGGAGCAACTAGTCACTTTGTTACCGAGGAAC 848 Query 873 TTGATTCAGGGCCAATTATTGAACAAATGGTTGAGAGTGTTTCCCACCGAGACAACTTAA 932 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 849 TTGATTCAGGGCCTATTATTGAACAAATGGTTGAGAGTGTTTCTCACCGAGACAACCTAA 908 Query 933 GGAGCTTTGTCCAGAAATCCGAGGACCTAGAGAAAAAATGCCTCACGAGAGCTATAAAAT 992 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 909 GGAGCTTTGTCCAGAAATCCGAGGACCTAGAGAAAAAATGCCTCACGAAAGCTATAAAAT 968 Query 993 CTTACTGCGAACTAAGGGTATTACCTTATGGTACAAACAAGACTGTTGTATTCTAGTTAA 1052 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 969 CTTACTGCGAACTACGGGTATTACCTTATGGCACAAACAAGACTGTTGTATTCTAGTTAA 1028 Query 1053 GAAAGCAATAACTACGATTCTCATCTGATTCTTTGTTTGAAC-ATCTCAAGAAAAGGATT 1111 ||||||||| |||| ||||||||||||||| ||||| ||||| | ||||||| ||||||| Sbjct 1029 GAAAGCAATGACTAAGATTCTCATCTGATTTTTTGTATGAACTA-CTCAAGAGAAGGATT 1087 Query 1112 CTCTATCGCATGCGATTGCTGAGACTCAGAGATTCCAGAGAGCATTTGGCAGCCTCGAGG 1171 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 1088 CTCTATCGCATGCGATCGCTGAAACTCAGAGATTCCAGAGAGCATTTGGCAGCCTCAAGG 1147 Query 1172 CAACTTACTAAGCGGAGATTAGACTGAATCCCAGCAACCCATCTCTGCTTCTGAATCTTG 1231 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1148 CAACTTACTAAGCGGAGATTAGACTGAATCCCAGCAACCCATCTCTGCTTCTGAATCTTA 1207 Query 1232 CTCTTGCACTTGAACTCTAAAAGACCCTGTCCTGTTTTCAGACCAAAATAGACTTCTTCG 1291 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1208 CTCTTGCACTTGAACTCTAAAAGGCCGTGTCCTGTTTTCAGACCAAAATAGACTTCTTCG 1267 Query 1292 GAATTTTCCCTCTCTTTCCTGCAAGGCCATGCAGATATCTCGTCGCAGACTCCATAAACA 1351 ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| Sbjct 1268 GAATTTTCCCTCTCTTTCCTGTAAGGCCATGCACATATCTCGTCGCAGACTGCATAAACA 1327 Query 1352 ACACCTTTGAAAGCAACAACAAGCTTCAGACTTCCGTGTTTCAAGTAATTTCCCTAACTC 1411 || |||| |||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1328 ACGCCTTCAAAAGTATCAACAAGCTTCAGACTTCCGTGTTTCAAGTAATTTCCCTAACTC 1387 Query 1412 TTGAAAGAATaaaaaaaTGCTTACATTTGATCTTCTTGGAGAATGCCCCTCCAACATGTT 1471 |||||| || |||||| |||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1388 TTGAAA-AAGAAAAAA-TGCTTACATTTGATCTTCTTGGAGAAAGCCCCTCCAACGTGTT 1445 Query 1472 TGCTTTTGAGTTTGATCATGACCTGAGAAATTCATAGAGGTTAAGTAACTA 1522 ||||||||||||| ||||||||||| || ||||||| |||||||||||||| Sbjct 1446 TGCTTTTGAGTTTTATCATGACCTGGGACATTCATATAGGTTAAGTAACTA 1496 > Ahg890488 jgi|Araly1|890488|Al_scaffold_0007_2474 Length=1218 Score = 111 bits (60), Expect = 1e-23 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 1434 ACATTTGATCTTCTTGGAGAATGCCCCTCCAACATGTTTGCTTTTGAGTTTGATCATGAC 1493 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 981 ACATTTGATCTTCTTGGAGAATGCCCCTCCAACATGTTTACTTTTGAGTTTGATCATTAC 922 Query 1494 CTGAGA 1499 |||||| Sbjct 921 CTGAGA 916 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57363908970 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5