BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47450.1
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494233 jgi|Araly1|494233|fgenesh2_kg.8__49__AT5G47450.1 1491 0.0
Ahg475524 jgi|Araly1|475524|fgenesh2_kg.2__654__AT5G47450.1 1020 0.0
Ahg942420 jgi|Araly1|942420|scaffold_602964.1 588 3e-167
Ahg914379 jgi|Araly1|914379|Al_scaffold_0001_4633 156 4e-37
> Ahg494233 jgi|Araly1|494233|fgenesh2_kg.8__49__AT5G47450.1
Length=1028
Score = 1491 bits (807), Expect = 0.0
Identities = 965/1039 (93%), Gaps = 19/1039 (2%)
Strand=Plus/Plus
Query 1 ACAGAAAATAGAAAGAAG-TAACAAAACCAAAGCAAAAAATGGTGAAGATCGAAGTTGGA 59
||||||||||||||| || ||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 1 ACAGAAAATAGAAAG-AGATAACAAAACCAAAACAAGAAATGGTGAAGATCGAACTTGGA 59
Query 60 AGTGTGGGAGACTCATTCAGTGTATCATCTCTTAAAGCTTACTTGTCTGAGTTCATCGCA 119
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 60 AGTGTGGGTGACTCATTCAGTGTATCATCTCTAAAAGCTTACTTGTCTGAGTTTATCGCA 119
Query 120 ACTCTTCTCTTCGTATTCGCAGGCGTTGGCTCTGCTGTTGCGTTTGCCAAACTAACCTCT 179
|| ||||||||||||||||| || |||||||||||| | ||||||| |||||||||||||
Sbjct 120 ACGCTTCTCTTCGTATTCGCCGGTGTTGGCTCTGCTATCGCGTTTGACAAACTAACCTCT 179
Query 180 GATGGAGCCTTGGACCCAGCTGGTCTTGTAGCAATTGCAATTGCTCACGCGTTTGCTCTT 239
||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 180 GATGGAGCCTTGGACCCGGCTGGTCTTGTAGCGATTGCGATTGCTCATGCGTTTGCTCTT 239
Query 240 TTCGTTGGAGTTTCCATTGCGGCTAACATTTCTGGTGGTCACCTTAACCCAGCCGTGACT 299
|||||||||||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct 240 TTCGTTGGAGTTTCCATTGCGGCTAATATATCCGGTGGTCACCTTAACCCAGCTGTGACT 299
Query 300 CTTGGCCTTGCCATCGGCGGAAACATAACACTCATCACAGGTTTCTTCTATTGGATTGCT 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 CTTGGCCTTGCCATCGGCGGAAACATAACACTCATCATAGGTTTCTTCTATTGGATTGCT 359
Query 360 CAGTGTCTTGGCTCCATCGTCGCTTGTCTTCTCCTCGTCTTTGTTACTAATGGCAAGAGC 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 360 CAGTGTCTTGGCTCCATCGTCGCTTGTCTTCTCCTCGTCTTTGTTACCAATGGAAAGAGC 419
Query 420 GTACCGACCCACGGGGTCTCAGCCGGTCTAGGAGCGGTCGAAGGTGTCGTCATGGAGATC 479
|||||||||||||| ||| |||||||| |||||||||| |||||| |||| |||||||||
Sbjct 420 GTACCGACCCACGGAGTCGCAGCCGGTTTAGGAGCGGTTGAAGGTATCGTGATGGAGATC 479
Query 480 GTTGTGACCTTTGCATTGGTCTACACCGTTTACGCCACAGCAGCTGATCCAAAGAAAGGA 539
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 GTTGTGACCTTTGCATTGGTCTACACCGTTTACGCCACCGCAGCTGATCCAAAGAAAGGA 539
Query 540 TCGCTAGGGACCATCGCTCCAATCGCCATCGGCTTCATAGTTGGTGCCAACATCCTCGCT 599
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 TCGCTTGGGACCATCGCTCCAATCGCTATCGGCTTCATAGTTGGTGCCAACATCCTCGCT 599
Query 600 GCTGGTCCATTCAGTGGTGGCTCCATGAATCCAGCAAGGTCGTTCGGACCAGCTGTTGTC 659
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 600 GCTGGTCCATTCAGTGGTGGCTCCATGAACCCAGCAAGGTCTTTCGGACCAGCTGTTGTG 659
Query 660 AGTGGTGACTTGTCCCAAATCTGGATCTATTGGGTGGGACCACTTGTGGGTGGTGCACTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGTGGTGACTTGTCCCAAATCTGGATCTATTGGGTGGGACCACTTGTGGGTGGTGCACTC 719
Query 720 GCGGGACTTATCTACGGTGATGTGTTCATCGGTTCTTATGAAGCGGTAGAAACCCGTGAG 779
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCCGGACTTATCTACGGTGACGTGTTCATCGGTTCTTATGAAGCGGTAGAAACCCGTGAG 779
Query 780 ATCCGAGTGTAATTGACTGGGTTTTGTGATTGCTTGATGGTTGGTTGATGTTTTGTTTGC 839
|||||||||||||| || ||||||||||| |||||| || ||| ||| || || ||||||
Sbjct 780 ATCCGAGTGTAATTAACCGGGTTTTGTGAATGCTTGGTGTTTGCTTGTTGGTTGGTTTGC 839
Query 840 GTGTGTAT----GTTTGGTGTCCACTTTCTTGCAAGATTGTATGTAGAGAAAAGaaaaaa 895
|||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 840 GTGTGTATCCATGTTTCGTGTCCACTTTCTTGCAAGATTGTATGTAGAGAAAACAAAAAA 899
Query 896 aGTTATGTCCTGTTAATAAGAAAATGTATATACATTTCACTTCATCTCCtttt--ttttA 953
||||||||| |||||||||||||||||||||| ||||||||||| || |||| |||||
Sbjct 900 AGTTATGTCGTGTTAATAAGAAAATGTATATA--TTTCACTTCATGTC-TTTTACTTTTA 956
Query 954 ACGTATAGCATGTTTGG-TTTCTTTCATATGTTTTTGTATTCTATGGCATTTTACTTTCA 1012
|||||||||||| || |||||||||||| | | | | | |||| ||||||||||||||
Sbjct 957 ACGTATAGCATG---GGATTTCTTTCATAT-TCTAT-T-T-CTATCGCATTTTACTTTCA 1009
Query 1013 TAAAGTTATCGACATAATT 1031
|||||||||| | ||||||
Sbjct 1010 TAAAGTTATCAATATAATT 1028
> Ahg475524 jgi|Araly1|475524|fgenesh2_kg.2__654__AT5G47450.1
Length=1308
Score = 1020 bits (552), Expect = 0.0
Identities = 678/736 (92%), Gaps = 20/736 (3%)
Strand=Plus/Plus
Query 295 TGACTCTTGGCCTTGCCATCGGCGGAAACATAACACTCATCACAGGTTTCTTCTATTGGA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 578 TGACTCTTGGCCTTGCCATCGGCGGAAACATAACACTCATCACAGGTTTCTTCTACTGGA 637
Query 355 TTGCTCAGTGTCTTGGCTCCATCGTCGCTTGTCTTCTCCTCGTCTTTGTTACTAATGGCA 414
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 638 TTGCTCAGTGTCTTGGCTCCATCGTCGCTTGTCTTCTCCTCGTCTTTGTTACCAATGGAA 697
Query 415 AGAGCGTACCGACCCACGGGGTCTCAGCCGGTCTAGGAGCGGTCGAAGGTGTCGTCATGG 474
||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||| ||||
Sbjct 698 AGAGCGTACCGACCCACGGAGTCGCAGCCGGTTTAGGAGCGGTCGAAGGTATCGTGATGG 757
Query 475 AGATCGTTGTGACCTTTGCATTGGTCTACACCGTTTACGCCACAGCAGCTGATCCAAAGA 534
||||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 758 AGATCATTGTCACCTTTGCTTTGGTCTACACCGTCTACGCCACAGCAGCTGATCCAAAGA 817
Query 535 AAGGATCGCTAGGGACCATCGCTCCAATCGCCATCGGCTTCATAGTTGGTGCCAACATCC 594
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 818 AAGGATCGCTTGGGACCATCGCTCCAATCGCTATCGGCTTCATAGTTGGTGCCAACATCC 877
Query 595 TCGCTGCTGGTCCATTCAGTGGTGGCTCCATGAATCCAGCAAGGTCGTTCGGACCAGCTG 654
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 878 TCGCTGCTGGTCCATTCAGTGGTGGCTCCATGAACCCAGCAAGGTCTTTCGGACCAGCTG 937
Query 655 TTGTCAGTGGTGACTTGTCCCAAATCTGGATCTATTGGGTGGGACCACTTGTGGGTGGTG 714
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 938 TTGTGAGTGGTGACTTGTCCCAAATCTGGATCTATTGGGTGGAACCACTTGTGGGTGGTG 997
Query 715 CACTCGCGGGACTTATCTACGGTGATGTGTTCATCGGTTCTTATGAAGCGGTAGAAACCC 774
||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 998 CACTCGCCGGACTTATCTACGGTGACGTGTTCATCGGTTCCTATGAAGCGGTAGAAACCC 1057
Query 775 GTGAGATCCGAGTGTAATTGACTGGGTTTTGTGATTGCTTGATGGTTGGTTGATGTTTTG 834
| ||||||||||||||||| || ||||||||||| ||||||||| ||| ||| || ||||
Sbjct 1058 GAGAGATCCGAGTGTAATTAACCGGGTTTTGTGAATGCTTGATGTTTGCTTGTTGGTTTG 1117
Query 835 TTTGCGTGTGTATGTTTGGTGTCCACTTTCTTGCAAGATTGTATGTAGAGAAAAGaaaaa 894
||||||||| ||||||||||||||| |||||| ||||||||||||||||||||| |||||
Sbjct 1118 TTTGCGTGTTTATGTTTGGTGTCCATTTTCTTCCAAGATTGTATGTAGAGAAAACAAAAA 1177
Query 895 aa-------GTTATGTCCTGTTAATAAGAAAATGTATATACATTTCACTTCATCTCCttt 947
|| |||||||| |||||||||||||||||||||| ||||||||||| || |||
Sbjct 1178 AAAATTAAAGTTATGTCGTGTTAATAAGAAAATGTATATA--TTTCACTTCATGTCTTTT 1235
Query 948 -tttttAACGTATAGCATGTTTGG-TTTCTTTCATATGTTTTTG--T---ATT-CTATGG 999
||||||||||||||||| | || |||||||||||||| |||| | ||| |||| |
Sbjct 1236 ATTTTTAACGTATAGCAT-T--GGATTTCTTTCATATGTATTTGCATTCTATTTCTATCG 1292
Query 1000 CATTTTACTTTCATAA 1015
||||||||||||||||
Sbjct 1293 CATTTTACTTTCATAA 1308
Score = 390 bits (211), Expect = 9e-108
Identities = 244/260 (94%), Gaps = 1/260 (0%)
Strand=Plus/Plus
Query 33 CAAAAAATGGTGAAGATCGAAGTTGGAAGTGTGGGAGACTCATTCAGTGTATCATCTCTT 92
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 CAAAAAATGGTGAAGATCGAAGTTGGAAGTGTGGGTGACTCATTCAGTGTATCATCTCTA 60
Query 93 AAAGCTTACTTGTCTGAGTTCATCGCAACTCTTCTCTTCGTATTCGCAGGCGTTGGCTCT 152
|||||||||||||||||||| |||||||||||||||||| |||| || || |||||||||
Sbjct 61 AAAGCTTACTTGTCTGAGTTTATCGCAACTCTTCTCTTCATATTTGCCGGTGTTGGCTCT 120
Query 153 GCTGTTGCGTTTGCCAAACTAACCTCTGATGGAGCCTTGGACCCAGCTGGTCTTGTAGCA 212
||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GCTATAGCGTTTGACAAACTAACCTCTGATGGAGCCTTGGACCCGGCTGGTCTTGTAGCG 180
Query 213 ATTGCAATTGCTCACGCGTTTGCTCTTTTCGTTGGAGTTTCCATTGCGGCTAACATTTCT 272
||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct 181 ATTGCGATTGCTCACGCGTTTG-TCTTTTCGTTGGAGTTTCCATTGCGGCTAATATATCT 239
Query 273 GGTGGTCACCTTAACCCAGC 292
||||||||||||||||||||
Sbjct 240 GGTGGTCACCTTAACCCAGC 259
> Ahg942420 jgi|Araly1|942420|scaffold_602964.1
Length=457
Score = 588 bits (318), Expect = 3e-167
Identities = 363/385 (94%), Gaps = 2/385 (1%)
Strand=Plus/Plus
Query 33 CAAAAAATGGTGAAGATCGAAGTTGGAAGTGTGGGAGACTCATTCAGTGTATCATCTCTT 92
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 15 CAAAAAATGGTGAAGATCGAAGTTGGAAGTGTGGGTGACTCATTCAGTGTATCATCTCTA 74
Query 93 AAAGCTTACTTGTCTGAGTTCATCGCAACTCTTCTCTTCGTATTCGCAGGCGTTGGCTCT 152
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 75 AAAGCTTACTTGTCTGAGTTTATCGCAACTCTTCTCTTCGTATTCGCCGGTGTTGGCTCT 134
Query 153 GCTGTTGCGTTTGCCAAACTAACCTCTGATGGAGCCTTGGACCCAGCTGGTCTTGTAGCA 212
||| | ||||||| |||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 135 GCTATAGCGTTTGACAAACTAACCTCTGATGGAGCCTTAGACACGGCTGGTCTTGTAGCG 194
Query 213 ATTGCAATTGCTCACGCGTTTGCTCTTTTCGTTGGAGTTTCCATTGCGGCTAACAT-TTC 271
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || | |
Sbjct 195 ATTGCGATTGCTCACGCGTTTGCTCTTTTTGTTGGAGTTTCCATTGCGGCTAATATATGC 254
Query 272 TGGTGGTCACCTTAACCCAGCCGTGACTCTTGGCCTTGCCATCGGCGGAAACATAACACT 331
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 255 -GGTGGTCACCTTAACCCAGCAGTGACTCTTGGCCTTGCCATCGGCGGAAACATAACACT 313
Query 332 CATCACAGGTTTCTTCTATTGGATTGCTCAGTGTCTTGGCTCCATCGTCGCTTGTCTTCT 391
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 314 CATCACAGGTTTCTTCTACTGGATTGCTCAGTGTCTTGGCTCCATCGTCGCTTGTCTTCT 373
Query 392 CCTCGTCTTTGTTACTAATGGCAAG 416
||||||||||||||| ||||| |||
Sbjct 374 CCTCGTCTTTGTTACCAATGGAAAG 398
> Ahg914379 jgi|Araly1|914379|Al_scaffold_0001_4633
Length=747
Score = 156 bits (84), Expect = 4e-37
Identities = 377/513 (73%), Gaps = 42/513 (8%)
Strand=Plus/Plus
Query 249 GTTTCCATTGCGGCTAA-CATTTCTGGTGGTCACCTTAACCCAGCCGTGACTCTTGGCCT 307
||||| ||||| ||||| || || ||||| || ||||||||||||| ||| |||||||
Sbjct 178 GTTTCGATTGCAGCTAACCA-CTCCGGTGGCCATGTTAACCCAGCCGTTACTTTTGGCCT 236
Query 308 TGCCATCGGCGGAAACA-TAACACTCATCACAGG-TTTCTTCTATTGGATTGCTCAG-TG 364
|| | |||||||| | | ||| ||||||| || || |||||||||||||||||| |
Sbjct 237 TGTTGTTGGCGGAAA-AGTCACAATCATCACCGGAGTT-TTCTATTGGATTGCTCAGCT- 293
Query 365 TCTTGGCTCCATCGTCGCTTGTCTT-CTCCTCGTCTTTGTTA-C--T--AATGGCAAGAG 418
||| || |||| ||| ||||| ||| || ||| ||||| | | | ||| | | |
Sbjct 294 TCTCGGGTCCACCGTAGCTTG-CTTCCTTCTCAAATTTGTCACCGGTGGTTTGGTATG-G 351
Query 419 CG--T---A--C-C-GACCCACGGGGTCT-CAGCCGGTCTAGGAGC-GGTCGAAGGTGTC 467
|| | | | | || |||| || | | || || ||||| | | | |||| ||
Sbjct 352 CGATTCCAATCCACAGA-CCACAACGT-TGCGGCTGGAGTAGGAACAGCAC-AAGGAGTA 408
Query 468 GTCATGGAGATCGTTGTGACCTTTGCATTGGTCTACACCGTTTACGCCACAGC-AGCTGA 526
|| ||||||||| | | || || ||||||||||||||||||||||||||||| | |||
Sbjct 409 GTAATGGAGATCATAATCACATTCGCATTGGTCTACACCGTTTACGCCACAGCCAT-TGA 467
Query 527 -TCCAAAGAAAGG-ATCGCTAGGGACCATCGCTCCAATCGCCATCGG-CTTCATAGTTGG 583
||||| || || | | || || |||||||||||| | || ||||| || ||| |||||
Sbjct 468 CTCCAAC-AATGGCA-CTCTCGGAACCATCGCTCCACTTGCTATCGGACT-CATCGTTGG 524
Query 584 TGCCAACATCCTCGCTGCTGGTCCATTCAGTGGTGGCTCCATGAATCCAGCAAGGTCGTT 643
||| ||||| || || || ||||| ||| ||| || |||||||| || || | || ||
Sbjct 525 TGCTAACATTCTTGCAGCCGGTCCGTTCTCTGGCGGTTCCATGAACCCTGCTCGTTCCTT 584
Query 644 CGGACCAGCTGTTGTCAGT-GGTGACTTGTCCCAA-ATCTGGATCTATTGGGTGGGACCA 701
||||||||| ||| | || || || || || | || ||| | |||||||| || |||
Sbjct 585 TGGACCAGCTCTTG-CGGTTGGAGATTTTTCAGGACAT-TGGGTTTATTGGGTCGGTCCA 642
Query 702 CTTGTGGGTGGTGCACTCGCGGGACTTATCTAC 734
||||| ||||| | ||| || ||| ||||||||
Sbjct 643 CTTGTTGGTGGGGGACTTGCCGGAGTTATCTAC 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39114112842
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5