BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G47455.4

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494231 jgi|Araly1|494231|fgenesh2_kg.8__47__AT5G47455.3           560    3e-159
  Ahg493145 jgi|Araly1|493145|fgenesh2_kg.7__2578__AT4G17310.1         180    1e-44 


> Ahg494231 jgi|Araly1|494231|fgenesh2_kg.8__47__AT5G47455.3
Length=439

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 415/464 (89%), Gaps = 28/464 (6%)
 Strand=Plus/Plus

Query  67   TTTTCTAGCTCTTACAATGGCTTCTAGATTCATGAGCAGATCCTCTGTCTCGTCTTTCAA  126
            ||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||
Sbjct  1    TTTTCTATCTCTTACAATGGCGTCTAGATTCATGAGCAGATCCTCCGTCTCTTCTCTCAA  60

Query  127  ATCCGCCATTAGATCTTCATTTCGAAATTCTCCCATTGGCACTGGATCTTCTCCGGCTGC  186
            |||||| || ||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct  61   ATCCGCAATCAGATCTTCACTTCGAAATTCTCCCATTGGCACCGGATCTTCTCCGGCTGC  120

Query  187  TGCTTCATCCGCCGGATTTCGTATTCCGTCTAAACCAGCTGCTTCTCCTCTTCCCCGATT  246
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  121  TGCTTCATCCGCCGGATTTCGTATTCCGTCTAAACCAGCTGCTTCTCCACTTCCCCGATT  180

Query  247  CTCCTTCTCCAGGTGTCCGTCGGAGCTTGGTTGTGTTCAGTCTCTGTTACCGCTACACAG  306
            |||||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct  181  CTCCTTCTCCAGGTGTCCATCTGAGCTTGGTTGTGTTCAGTCGCTGTTACCGCTTCACAG  240

Query  307  CACGGTGGCGGCTGCGCGGTTGACGTCATGCTTAAGCACAACTTCCAGAAGCAGCCGAGC  366
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  241  CACGGTGGCGGCTGCGCGGTTGACGTCATGCCTAAGCACAACTTCCAGAAGCAGCCGAGC  300

Query  367  TCTCACTCAGGA--TGGGACTTTCAGTCCCAAGGTGACAAGATACATTCATGAAGAGTAT  424
            |||| |||||||  |||| |||||||| ||||||||||||| |   |    || | |   
Sbjct  301  TCTCTCTCAGGAGATGGGCCTTTCAGTTCCAAGGTGACAAG-T---T----GA-G-G---  347

Query  425  TACTATTGAGGGATGCAAGTTTCTTCTCTAAACTTAGAGACAAGAATTTGTT-TTTTGTG  483
                   ||    |||||||||||||| |||||||||||||||||| ||||| |||| ||
Sbjct  348  -------GA----TGCAAGTTTCTTCTATAAACTTAGAGACAAGAAGTTGTTGTTTT-TG  395

Query  484  TTATGACTCCAAACTTATGTTCTTTGATTCATGAAGGGAAAAAA  527
            ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  396  TTATGACTCCAAACTCATGTTCTTTGATTCATGAAGGGAAAAAA  439


> Ahg493145 jgi|Araly1|493145|fgenesh2_kg.7__2578__AT4G17310.1
Length=568

 Score =  180 bits (97),  Expect = 1e-44
 Identities = 121/133 (91%), Gaps = 0/133 (0%)
 Strand=Plus/Plus

Query  245  TTCTCCTTCTCCAGGTGTCCGTCGGAGCTTGGTTGTGTTCAGTCTCTGTTACCGCTACAC  304
            ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct  173  TTCTCCTTCTCCAGGTGTCCGTCGGAGCTGGGATGTGTTCAGTCTCTGTTACCGCTGCAC  232

Query  305  AGCACGGTGGCGGCTGCGCGGTTGACGTCATGCTTAAGCACAACTTCCAGAAGCAGCCGA  364
            |||||||||||||| ||| || |||||||||| ||||||||||| || || || ||||||
Sbjct  233  AGCACGGTGGCGGCGGCGAGGCTGACGTCATGTTTAAGCACAACCTCAAGGAGTAGCCGA  292

Query  365  GCTCTCACTCAGG  377
            |||||| ||||||
Sbjct  293  GCTCTCTCTCAGG  305



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19535661568


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5