BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47460.1
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948159 jgi|Araly1|948159|scaffold_800046.1 2604 0.0
> Ahg948159 jgi|Araly1|948159|scaffold_800046.1
Length=1771
Score = 2604 bits (1410), Expect = 0.0
Identities = 1623/1726 (94%), Gaps = 14/1726 (1%)
Strand=Plus/Plus
Query 1 ATGCTAAGAACTGTGTCAAATGCTTTTACC-ACAAGGAGCCATGTTGGTTCCACTGCGTC 59
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 21 ATGCTAAGAACTGTGTCAAATGCTTTT-CCGACAAGGAGCCATGTTGGTTCCACTGCCTA 79
Query 60 TTCGAACTCATGGAGCACCATCGTTCCTGCTCTGGCTCGTTTCGGTTCCATCGGCGTATT 119
|||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 80 TTCGAACTCATGGACCACCATTGTTCCTGCTCTGGCTCGGTTCGGTTCCATCGGCGTATT 139
Query 120 ACGCGCTGCCGTTGAATTGATCAATGACGGCGAAAAGCCAGATGCTTCTCCACTTGTTCA 179
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 140 ACGCGCTGCAGTTGAATTGATCAATGACGGCGAAAAGCCAGGTGCTTCTCCACTTGTTCA 199
Query 180 CTTGCTCCGTGTCTCTGGCAATTATGGCTACGTTTCTTTGTGTCGACAGCTTCACGGTTA 239
||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||
Sbjct 200 CTTGCTCCGTGTCTCCGGGAATTATGGCTACGTTTCTTTGTGTCGACAGCTTCATGGCTA 259
Query 240 CGTCACAAAACATGGGTTTGTCTCAAATACGCGTCTTTCTAATTCGCTGATGAGGTTTTA 299
|||| ||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 260 CGTCGTAAAACATGGGTTTGTCTCAAATACGCGTCTTTCCAATTCGTTAATGAGGTTTTA 319
Query 300 CAAGACAAGTGACTCATTAGAAGATGCTCACAAAGTGTTTGATGAAATGCCTGACCCAGA 359
||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 320 CAAGACAAGCGACTCGTTGGAAGATGCTCACAAACTGTTTGATGAAATGCCTGACCCAGA 379
Query 360 TGTCATATCGTGGAACTCATTGGTTTCTGGTTATGTTCAATCGGGAAGGTTCCAGGAAGG 419
|||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 380 TGTCATTTCTTGGAACTCATTGGTTTCTGGTTACGTTCAATCAGGAAGGTTCCAGGAAGG 439
Query 420 AATTTGTTTGTTTCTTGAGCTTCATAGATCTGATGTCTTCCCTAACGAATTCTCTTTCAC 479
| | ||||||||||| |||| || |||||| |||| || |||||||| |||||||| ||
Sbjct 440 ACTCTGTTTGTTTCTCAAGCTCCACAGATCTTATGTTTTGCCTAACGAGTTCTCTTTTAC 499
Query 480 AGCCGCTTTAGCTGCTTGTGC-ACGATTGCATCTCTCGCCTCTCGGAGCTTGCATCCACT 538
||||||||||||||||||||| | || ||||||||| ||| ||||||||||||||||| |
Sbjct 500 AGCCGCTTTAGCTGCTTGTGCGA-GACTGCATCTCTGGCCACTCGGAGCTTGCATCCATT 558
Query 539 CCAAGCTTGTGAAACTAGGCTTAGAGAAAGGCAATGTTGTTGTGGGTAATTGTCTAATTG 598
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CCAAGATTGTGAAACTTGGCTTAGAGAAAGGCAATGTTGTTGTGGGTAATTGTCTAATTG 618
Query 599 ACATGTACGGGAAATGTGGTTTTATGGATGATGCTGTTTTGGTATTCCAACACATGGAAG 658
|||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||
Sbjct 619 ACATGTACGGGAAATGTGCTTCCATGGATGATGCAGTTTTGGTCTTCCAACACATGGAAG 678
Query 659 AAAAGGACACAGTTTCTTGGAATGCAATTGTTGCTTCCTGCTCAAGGAACGGTAAGCTCG 718
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 679 AAAAGGACACAGTTTCTTGGAATGCCATTGTTGCTTCCTGCTCAAGGAACGGTAAGCTCG 738
Query 719 AGCTGGGACTTTGGTTTTTCCACCAAATGCCAAATCCAGACACTGTAACATACAACGAGC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AGCTGGGACTTTGGTTTTTCCACCAAATGCCAAATCCAGACACTGTAACATACAACGAGC 798
Query 779 TCATCGATGCTTTCGTCAAGTCCGGGGATTTCAATAATGCCTTTCAGGTTCTATCGGATA 838
||||| |||||||||||||||| || |||||||||||||||||||||||||||| ||||
Sbjct 799 TCATCTATGCTTTCGTCAAGTCTGGAGATTTCAATAATGCCTTTCAGGTTCTATTAGATA 858
Query 839 TGCCGAATCCTAATTCATCTTCATGGAACACAATATTGACCGGTTATGTCAACAGTGAGA 898
|||| |||| ||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 859 TGCCAAATCGAAATTCGTCTTCATGGAACACAATATTGACCGGCTATGTAAACAGTGAGC 918
Query 899 AATCAGGGGAAGCTACTGAGTTTTTCACCAAAATGCATTCGTCAGGTGTCAGATTCGATG 958
||||||| |||||||||||||||||||||||||||||||| || || || |||| ||||
Sbjct 919 AATCAGGAGAAGCTACTGAGTTTTTCACCAAAATGCATTCATCGGGAGTTGGATTGGATG 978
Query 959 AGTACAGTCT-GTCAATAGTTCTGGCCGCCGTTGCTGCTCTCGCTGTGGTTCCATGGGGG 1017
||||||| || |||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 979 AGTACAG-CTTGTCAATAGTTCTAGCCACCATTGCTGCTCTCGCTGTGGTTCCATGGGGG 1037
Query 1018 AGTCTCATCCATGCTTGTGCTCAT-AAGCTTGGCCTAGACTCTCGAGTTGTTGTCGCGAG 1076
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1038 AGTCTCATCCATGCTTGTGCTC-TCAAGCTTGGCCTAGACTCTCGAGTTGTTGTCGCGAG 1096
Query 1077 TGCTCTGATAGATATGTATTCCAAATGCGGAATGTTGAAGCACGCTGAGCTGATGTTTTG 1136
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1097 TGCTCTGATAGATATGTATTCCAAATGCGGAATGTTGAAGCATGCTGAGCTGATGTTTTG 1156
Query 1137 GACAATGCCTAGAAAGAATCTGATTGTGTGGAACGAGATGATCTCTGGATATGCCCGTAA 1196
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1157 GACAATGCCTAGAAAGAATCTGATTATGTGGAACGCGATGATCTCTGGATATGCCCGTAA 1216
Query 1197 TGGCGATTCAATCGAGGCGATCAAGCTCTTTAACCAACTGAAACAAGAAAGGTTCCTGAA 1256
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1217 TGGCGATTCAATCGAGGCGATCAAGCTCTTTAACCAATTGAAACAAGAAAGGTTCATGAA 1276
Query 1257 ACCTGATCGATTCACGTTCTTGAATCTCTTAGCTGTGTGTTCTCATTGTGAAGTTCCAAT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 ACCTGATCGATTCACGTTCTTGAATCTCTTAGCTGTGTGTTCTCATTGTGAAGTTCCAAT 1336
Query 1317 GGAAGTCATGCTTGGATACTTTGAGATGATGATCAACGAGTATAGAATCAAACCAAGCGT 1376
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1337 GGAAGTCATGCTTGGATACTTTGAGATGATGATTAACGAGTATGGAATCAAACCAAGCGT 1396
Query 1377 AGAGCATTGCTGTTCTCTTATCAGAGCTATGGGGCAGAGAGGAGAGGTTTGGCAGGCAAA 1436
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 AGAGCATTGCTGTTCTATCATCAGAGCTATGGGGCAGAGAGGAGAGGTTTGGCAGGCAAA 1456
Query 1437 ACAGGTTATTCAAGAATTCGGTTTTGGGTATGATGGTGTGGCTTGGAGGGCGTTACTTGG 1496
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 AAAGGTGATTCAAGAATTCGGTTTTGGGTATGATGGTGTGGCTTGGAGGGCGTTACTTGG 1516
Query 1497 TGCTTGCAGTGCTCGCAAGGATCTGAAAGCTGCGAAAACCGTTGCCGCTAAGATGATTGA 1556
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1517 TGCTTGCAGTGCTCGCAAGGATCTGAAAGCTGCGAAAACCGTCGCCGCAAAGATGATTGA 1576
Query 1557 ATTAGGGGATGCTGATAAAGATGAGTATTTATACATAGTGATGTCGAATCTCTATGCTTA 1616
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1577 ATTAGGGGAAGCTGATAAAGATGAGTATGTATACATAGTGATGTCGAATCTCTATGCTTA 1636
Query 1617 CCATGAGAGATGGAGAGAAGTTGGTCAAATTAGGAAGATAATGAGAGAAAGTGGGGTA-C 1675
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |
Sbjct 1637 CCATGAGAGATGGAGGGAAGTTAGTCAAATTAGGAAGATAATGAGAGAAAAAGGGGTAAC 1696
Query 1676 TGAAAGAAGTCGGGTCTAGCTGGATTGATTCAAGAACAAAATGTAG 1721
||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1697 -GAAAGAAGTCGGGTCTAGCTGGATT----CAAGAGCAAAATGTAG 1737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64943867725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5