BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47460.1 Length=1731 Score E Sequences producing significant alignments: (Bits) Value Ahg948159 jgi|Araly1|948159|scaffold_800046.1 2604 0.0 > Ahg948159 jgi|Araly1|948159|scaffold_800046.1 Length=1771 Score = 2604 bits (1410), Expect = 0.0 Identities = 1623/1726 (94%), Gaps = 14/1726 (1%) Strand=Plus/Plus Query 1 ATGCTAAGAACTGTGTCAAATGCTTTTACC-ACAAGGAGCCATGTTGGTTCCACTGCGTC 59 ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | Sbjct 21 ATGCTAAGAACTGTGTCAAATGCTTTT-CCGACAAGGAGCCATGTTGGTTCCACTGCCTA 79 Query 60 TTCGAACTCATGGAGCACCATCGTTCCTGCTCTGGCTCGTTTCGGTTCCATCGGCGTATT 119 |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 80 TTCGAACTCATGGACCACCATTGTTCCTGCTCTGGCTCGGTTCGGTTCCATCGGCGTATT 139 Query 120 ACGCGCTGCCGTTGAATTGATCAATGACGGCGAAAAGCCAGATGCTTCTCCACTTGTTCA 179 ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 140 ACGCGCTGCAGTTGAATTGATCAATGACGGCGAAAAGCCAGGTGCTTCTCCACTTGTTCA 199 Query 180 CTTGCTCCGTGTCTCTGGCAATTATGGCTACGTTTCTTTGTGTCGACAGCTTCACGGTTA 239 ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || || Sbjct 200 CTTGCTCCGTGTCTCCGGGAATTATGGCTACGTTTCTTTGTGTCGACAGCTTCATGGCTA 259 Query 240 CGTCACAAAACATGGGTTTGTCTCAAATACGCGTCTTTCTAATTCGCTGATGAGGTTTTA 299 |||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||||| Sbjct 260 CGTCGTAAAACATGGGTTTGTCTCAAATACGCGTCTTTCCAATTCGTTAATGAGGTTTTA 319 Query 300 CAAGACAAGTGACTCATTAGAAGATGCTCACAAAGTGTTTGATGAAATGCCTGACCCAGA 359 ||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||||| Sbjct 320 CAAGACAAGCGACTCGTTGGAAGATGCTCACAAACTGTTTGATGAAATGCCTGACCCAGA 379 Query 360 TGTCATATCGTGGAACTCATTGGTTTCTGGTTATGTTCAATCGGGAAGGTTCCAGGAAGG 419 |||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 380 TGTCATTTCTTGGAACTCATTGGTTTCTGGTTACGTTCAATCAGGAAGGTTCCAGGAAGG 439 Query 420 AATTTGTTTGTTTCTTGAGCTTCATAGATCTGATGTCTTCCCTAACGAATTCTCTTTCAC 479 | | ||||||||||| |||| || |||||| |||| || |||||||| |||||||| || Sbjct 440 ACTCTGTTTGTTTCTCAAGCTCCACAGATCTTATGTTTTGCCTAACGAGTTCTCTTTTAC 499 Query 480 AGCCGCTTTAGCTGCTTGTGC-ACGATTGCATCTCTCGCCTCTCGGAGCTTGCATCCACT 538 ||||||||||||||||||||| | || ||||||||| ||| ||||||||||||||||| | Sbjct 500 AGCCGCTTTAGCTGCTTGTGCGA-GACTGCATCTCTGGCCACTCGGAGCTTGCATCCATT 558 Query 539 CCAAGCTTGTGAAACTAGGCTTAGAGAAAGGCAATGTTGTTGTGGGTAATTGTCTAATTG 598 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 559 CCAAGATTGTGAAACTTGGCTTAGAGAAAGGCAATGTTGTTGTGGGTAATTGTCTAATTG 618 Query 599 ACATGTACGGGAAATGTGGTTTTATGGATGATGCTGTTTTGGTATTCCAACACATGGAAG 658 |||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||| Sbjct 619 ACATGTACGGGAAATGTGCTTCCATGGATGATGCAGTTTTGGTCTTCCAACACATGGAAG 678 Query 659 AAAAGGACACAGTTTCTTGGAATGCAATTGTTGCTTCCTGCTCAAGGAACGGTAAGCTCG 718 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 679 AAAAGGACACAGTTTCTTGGAATGCCATTGTTGCTTCCTGCTCAAGGAACGGTAAGCTCG 738 Query 719 AGCTGGGACTTTGGTTTTTCCACCAAATGCCAAATCCAGACACTGTAACATACAACGAGC 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 739 AGCTGGGACTTTGGTTTTTCCACCAAATGCCAAATCCAGACACTGTAACATACAACGAGC 798 Query 779 TCATCGATGCTTTCGTCAAGTCCGGGGATTTCAATAATGCCTTTCAGGTTCTATCGGATA 838 ||||| |||||||||||||||| || |||||||||||||||||||||||||||| |||| Sbjct 799 TCATCTATGCTTTCGTCAAGTCTGGAGATTTCAATAATGCCTTTCAGGTTCTATTAGATA 858 Query 839 TGCCGAATCCTAATTCATCTTCATGGAACACAATATTGACCGGTTATGTCAACAGTGAGA 898 |||| |||| ||||| |||||||||||||||||||||||||| ||||| ||||||||| Sbjct 859 TGCCAAATCGAAATTCGTCTTCATGGAACACAATATTGACCGGCTATGTAAACAGTGAGC 918 Query 899 AATCAGGGGAAGCTACTGAGTTTTTCACCAAAATGCATTCGTCAGGTGTCAGATTCGATG 958 ||||||| |||||||||||||||||||||||||||||||| || || || |||| |||| Sbjct 919 AATCAGGAGAAGCTACTGAGTTTTTCACCAAAATGCATTCATCGGGAGTTGGATTGGATG 978 Query 959 AGTACAGTCT-GTCAATAGTTCTGGCCGCCGTTGCTGCTCTCGCTGTGGTTCCATGGGGG 1017 ||||||| || |||||||||||| ||| || ||||||||||||||||||||||||||||| Sbjct 979 AGTACAG-CTTGTCAATAGTTCTAGCCACCATTGCTGCTCTCGCTGTGGTTCCATGGGGG 1037 Query 1018 AGTCTCATCCATGCTTGTGCTCAT-AAGCTTGGCCTAGACTCTCGAGTTGTTGTCGCGAG 1076 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1038 AGTCTCATCCATGCTTGTGCTC-TCAAGCTTGGCCTAGACTCTCGAGTTGTTGTCGCGAG 1096 Query 1077 TGCTCTGATAGATATGTATTCCAAATGCGGAATGTTGAAGCACGCTGAGCTGATGTTTTG 1136 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1097 TGCTCTGATAGATATGTATTCCAAATGCGGAATGTTGAAGCATGCTGAGCTGATGTTTTG 1156 Query 1137 GACAATGCCTAGAAAGAATCTGATTGTGTGGAACGAGATGATCTCTGGATATGCCCGTAA 1196 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 1157 GACAATGCCTAGAAAGAATCTGATTATGTGGAACGCGATGATCTCTGGATATGCCCGTAA 1216 Query 1197 TGGCGATTCAATCGAGGCGATCAAGCTCTTTAACCAACTGAAACAAGAAAGGTTCCTGAA 1256 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1217 TGGCGATTCAATCGAGGCGATCAAGCTCTTTAACCAATTGAAACAAGAAAGGTTCATGAA 1276 Query 1257 ACCTGATCGATTCACGTTCTTGAATCTCTTAGCTGTGTGTTCTCATTGTGAAGTTCCAAT 1316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1277 ACCTGATCGATTCACGTTCTTGAATCTCTTAGCTGTGTGTTCTCATTGTGAAGTTCCAAT 1336 Query 1317 GGAAGTCATGCTTGGATACTTTGAGATGATGATCAACGAGTATAGAATCAAACCAAGCGT 1376 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 1337 GGAAGTCATGCTTGGATACTTTGAGATGATGATTAACGAGTATGGAATCAAACCAAGCGT 1396 Query 1377 AGAGCATTGCTGTTCTCTTATCAGAGCTATGGGGCAGAGAGGAGAGGTTTGGCAGGCAAA 1436 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1397 AGAGCATTGCTGTTCTATCATCAGAGCTATGGGGCAGAGAGGAGAGGTTTGGCAGGCAAA 1456 Query 1437 ACAGGTTATTCAAGAATTCGGTTTTGGGTATGATGGTGTGGCTTGGAGGGCGTTACTTGG 1496 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1457 AAAGGTGATTCAAGAATTCGGTTTTGGGTATGATGGTGTGGCTTGGAGGGCGTTACTTGG 1516 Query 1497 TGCTTGCAGTGCTCGCAAGGATCTGAAAGCTGCGAAAACCGTTGCCGCTAAGATGATTGA 1556 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1517 TGCTTGCAGTGCTCGCAAGGATCTGAAAGCTGCGAAAACCGTCGCCGCAAAGATGATTGA 1576 Query 1557 ATTAGGGGATGCTGATAAAGATGAGTATTTATACATAGTGATGTCGAATCTCTATGCTTA 1616 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1577 ATTAGGGGAAGCTGATAAAGATGAGTATGTATACATAGTGATGTCGAATCTCTATGCTTA 1636 Query 1617 CCATGAGAGATGGAGAGAAGTTGGTCAAATTAGGAAGATAATGAGAGAAAGTGGGGTA-C 1675 ||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| | Sbjct 1637 CCATGAGAGATGGAGGGAAGTTAGTCAAATTAGGAAGATAATGAGAGAAAAAGGGGTAAC 1696 Query 1676 TGAAAGAAGTCGGGTCTAGCTGGATTGATTCAAGAACAAAATGTAG 1721 ||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1697 -GAAAGAAGTCGGGTCTAGCTGGATT----CAAGAGCAAAATGTAG 1737 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64943867725 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5