BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47470.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915292 jgi|Araly1|915292|Al_scaffold_0008_43 1740 0.0
> Ahg915292 jgi|Araly1|915292|Al_scaffold_0008_43
Length=1092
Score = 1740 bits (942), Expect = 0.0
Identities = 1041/1090 (96%), Gaps = 2/1090 (0%)
Strand=Plus/Plus
Query 7 tttttttGTGTAAATTTGTATCGATCGGTGCTCAATCTCCTTGAGGAGAGGATGAAGACG 66
||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 4 TTTTTTTGTGTGAATTTGTATCGATCGGTGCTTAATCTCCTAGAGGAGAGGATGAAGAAG 63
Query 67 GAGATGATAGAAGAGATGGTGATAGTAGGAGGTTTAGTAATGGTTCAATTTGTATACGCA 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GAGATGATAGAAGAGATGGTGATAGTAGGAGGTTTAGTAATGGTTCAATTTGTATACGCA 123
Query 127 GGCAATTCTTTGCTCATGAGTTATTTGATGTCACTCGGTCTTGGCCCTTTCACCATTGTC 186
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 124 GGCAATTCTTTGCTCATGAGTTATTTGATGTCACTTGGTCTTGGCCCTTTCACCATTGTC 183
Query 187 ATCTTTTCTACATTCGCCACTTTCATAATCCTCTCCCCTTTCGCCATTCTCTTCGAAAGG 246
||||| ||||| || |||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 184 ATCTTCTCTACCTTTGCCACTTTCATAATTCTCTCGCCTTTCGCCATCCTCTTCGAAAGG 243
Query 247 AAGCAATGGCCAAATGAGCTTAGCTTGAGGCTGATTGGTAAGCTAGTTTTGATCTCCTTT 306
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 244 AAGCAATGGCCAAATGAGCTTAGTTTGAGGCTGATTGGTAAGCTAGTTTTGATCTCCTTT 303
Query 307 GCAGGGGTTACTCTGTTCCAGTCTCTGTTTCTAGAAGGAATCAGGTTGACATCACCAGCA 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GCAGGGGTTACTCTGTTCCAGTCTCTGTTTCTAGAAGGAATCAGGTTGACATCACCAGCA 363
Query 367 ATGGCAACAGCGATGCCAAATCTTGCTCCTGGTCTCAtttttttCATCGCTTGGATCGTT 426
||||||||||||||||| ||||| ||||||||||| ||||| ||| ||||||||||||||
Sbjct 364 ATGGCAACAGCGATGCCTAATCTCGCTCCTGGTCTTATTTTCTTCCTCGCTTGGATCGTT 423
Query 427 GGGTTAGAGAAGATGAATCTGAAATGTGTGTACAGCAAGTTGAAGATCTTAGGGACATTG 486
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 424 GGGTTAGAGAAGATGAATCTGAAATGTGTGTACAGCAAACTGAAGATCTTAGGGACATTG 483
Query 487 TTGTGCGTATTTGGCGCTTTAGCTATGAGCGTAATGCACAGCACTTCGATCAGTCACAAA 546
|| || ||||| ||||||||| |||||||| |||||||||||||||| |||||||| |||
Sbjct 484 TTATGTGTATTCGGCGCTTTAACTATGAGCATAATGCACAGCACTTCTATCAGTCATAAA 543
Query 547 GAAGAAGATGACACTCCAATATTCGTCTTTGATCGAGACAAGGTCGTTGGATGTATCTAC 606
||||||||||| |||||| |||||||||||||| |||| |||||||| ||||||||||||
Sbjct 544 GAAGAAGATGATACTCCAGTATTCGTCTTTGATAGAGATAAGGTCGTCGGATGTATCTAC 603
Query 607 CTTCTTGGAGCCGTCTTTGTTTTATCCACCAACGTCGTTCTTCAGGCGTCAACGTTGGCA 666
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 604 CTTCTTGGAGCCGTCTTTGTTTTATCTACCAACGTTGTTCTTCAGGCGTCAACATTGGCA 663
Query 667 GAGTTCCCGGCACCGATATCGTTAAGTGCAATAACGGCATTACTAGGAGTGTTGATAACA 726
||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 664 GAGTTTCCGGCACCGATATCCTTAAGTGCAATAACGGCATTACTAGGAATGTTGATAACA 723
Query 727 ACGGTGGTACTACTATTACAAAACCGAAAAACAAAAGTACTT-GCCAGTTCATTAATTAG 785
||||||||||||||| ||||||||||||| ||||||||||| | ||||||||| ||||
Sbjct 724 ACGGTGGTACTACTACTACAAAACCGAAAGGCAAAAGTACTTAG-CAGTTCATTTGTTAG 782
Query 786 TTTCGGTAACCTCGTTGGTTATTCTGTCCTGGCAGGGGCAGTGAGTGGAGCATGTGTTAG 845
||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 783 TTTCGGTAACCTCGTTGGTTACTCTCTCCTGGCAGGGACAGTGAGTGGAGCATGTGTTAG 842
Query 846 CTTTAATGGATGGGCCATGAAGAAACGTGGACCGGTTTTCGTTTCAATGTTTAGTCCTTT 905
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 843 CTTTAATGGATGGGCCATGAAGAAACGTGGACCGGTTTTGGTTTCAATGTTTAGTCCTTT 902
Query 906 CGCTACCGTTATTTCGGTTGCTTTCGCCGTTTTGACATTAGGAGAGTCCGTTAGCCTTGG 965
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 903 CGCTACCGTTATTTCGGTTGCTTTCTCCGTTTTGACATTAGGAGAGTCCGTTAGCCTTGG 962
Query 966 AAGTGTGGGAGGGATGGTGTTGATGTTCGTAGGGCTATACCTTGTGTTATGGGCTAAAGG 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAGTGTGGGAGGGATGGTGTTGATGTTCGTAGGGCTATACCTTGTGTTATGGGCTAAAGG 1022
Query 1026 CAAAGAAGGGTTCTCTGAAATTGAGAGTTTTGAGAGTGAGTTCGACTCTAAGAAGCCTCT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 CAAAGAAGGGTTCTCTGAAATTGAGAGTTTTGAGAGTGAGTTCGACTCTAAGAAGCCTCT 1082
Query 1086 TTTGTCTTGA 1095
||||||||||
Sbjct 1083 TTTGTCTTGA 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5