BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47470.1 Length=1095 Score E Sequences producing significant alignments: (Bits) Value Ahg915292 jgi|Araly1|915292|Al_scaffold_0008_43 1740 0.0 > Ahg915292 jgi|Araly1|915292|Al_scaffold_0008_43 Length=1092 Score = 1740 bits (942), Expect = 0.0 Identities = 1041/1090 (96%), Gaps = 2/1090 (0%) Strand=Plus/Plus Query 7 tttttttGTGTAAATTTGTATCGATCGGTGCTCAATCTCCTTGAGGAGAGGATGAAGACG 66 ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| | Sbjct 4 TTTTTTTGTGTGAATTTGTATCGATCGGTGCTTAATCTCCTAGAGGAGAGGATGAAGAAG 63 Query 67 GAGATGATAGAAGAGATGGTGATAGTAGGAGGTTTAGTAATGGTTCAATTTGTATACGCA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 GAGATGATAGAAGAGATGGTGATAGTAGGAGGTTTAGTAATGGTTCAATTTGTATACGCA 123 Query 127 GGCAATTCTTTGCTCATGAGTTATTTGATGTCACTCGGTCTTGGCCCTTTCACCATTGTC 186 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 124 GGCAATTCTTTGCTCATGAGTTATTTGATGTCACTTGGTCTTGGCCCTTTCACCATTGTC 183 Query 187 ATCTTTTCTACATTCGCCACTTTCATAATCCTCTCCCCTTTCGCCATTCTCTTCGAAAGG 246 ||||| ||||| || |||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 184 ATCTTCTCTACCTTTGCCACTTTCATAATTCTCTCGCCTTTCGCCATCCTCTTCGAAAGG 243 Query 247 AAGCAATGGCCAAATGAGCTTAGCTTGAGGCTGATTGGTAAGCTAGTTTTGATCTCCTTT 306 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 244 AAGCAATGGCCAAATGAGCTTAGTTTGAGGCTGATTGGTAAGCTAGTTTTGATCTCCTTT 303 Query 307 GCAGGGGTTACTCTGTTCCAGTCTCTGTTTCTAGAAGGAATCAGGTTGACATCACCAGCA 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 GCAGGGGTTACTCTGTTCCAGTCTCTGTTTCTAGAAGGAATCAGGTTGACATCACCAGCA 363 Query 367 ATGGCAACAGCGATGCCAAATCTTGCTCCTGGTCTCAtttttttCATCGCTTGGATCGTT 426 ||||||||||||||||| ||||| ||||||||||| ||||| ||| |||||||||||||| Sbjct 364 ATGGCAACAGCGATGCCTAATCTCGCTCCTGGTCTTATTTTCTTCCTCGCTTGGATCGTT 423 Query 427 GGGTTAGAGAAGATGAATCTGAAATGTGTGTACAGCAAGTTGAAGATCTTAGGGACATTG 486 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 424 GGGTTAGAGAAGATGAATCTGAAATGTGTGTACAGCAAACTGAAGATCTTAGGGACATTG 483 Query 487 TTGTGCGTATTTGGCGCTTTAGCTATGAGCGTAATGCACAGCACTTCGATCAGTCACAAA 546 || || ||||| ||||||||| |||||||| |||||||||||||||| |||||||| ||| Sbjct 484 TTATGTGTATTCGGCGCTTTAACTATGAGCATAATGCACAGCACTTCTATCAGTCATAAA 543 Query 547 GAAGAAGATGACACTCCAATATTCGTCTTTGATCGAGACAAGGTCGTTGGATGTATCTAC 606 ||||||||||| |||||| |||||||||||||| |||| |||||||| |||||||||||| Sbjct 544 GAAGAAGATGATACTCCAGTATTCGTCTTTGATAGAGATAAGGTCGTCGGATGTATCTAC 603 Query 607 CTTCTTGGAGCCGTCTTTGTTTTATCCACCAACGTCGTTCTTCAGGCGTCAACGTTGGCA 666 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 604 CTTCTTGGAGCCGTCTTTGTTTTATCTACCAACGTTGTTCTTCAGGCGTCAACATTGGCA 663 Query 667 GAGTTCCCGGCACCGATATCGTTAAGTGCAATAACGGCATTACTAGGAGTGTTGATAACA 726 ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 664 GAGTTTCCGGCACCGATATCCTTAAGTGCAATAACGGCATTACTAGGAATGTTGATAACA 723 Query 727 ACGGTGGTACTACTATTACAAAACCGAAAAACAAAAGTACTT-GCCAGTTCATTAATTAG 785 ||||||||||||||| ||||||||||||| ||||||||||| | ||||||||| |||| Sbjct 724 ACGGTGGTACTACTACTACAAAACCGAAAGGCAAAAGTACTTAG-CAGTTCATTTGTTAG 782 Query 786 TTTCGGTAACCTCGTTGGTTATTCTGTCCTGGCAGGGGCAGTGAGTGGAGCATGTGTTAG 845 ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| Sbjct 783 TTTCGGTAACCTCGTTGGTTACTCTCTCCTGGCAGGGACAGTGAGTGGAGCATGTGTTAG 842 Query 846 CTTTAATGGATGGGCCATGAAGAAACGTGGACCGGTTTTCGTTTCAATGTTTAGTCCTTT 905 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 843 CTTTAATGGATGGGCCATGAAGAAACGTGGACCGGTTTTGGTTTCAATGTTTAGTCCTTT 902 Query 906 CGCTACCGTTATTTCGGTTGCTTTCGCCGTTTTGACATTAGGAGAGTCCGTTAGCCTTGG 965 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 903 CGCTACCGTTATTTCGGTTGCTTTCTCCGTTTTGACATTAGGAGAGTCCGTTAGCCTTGG 962 Query 966 AAGTGTGGGAGGGATGGTGTTGATGTTCGTAGGGCTATACCTTGTGTTATGGGCTAAAGG 1025 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 AAGTGTGGGAGGGATGGTGTTGATGTTCGTAGGGCTATACCTTGTGTTATGGGCTAAAGG 1022 Query 1026 CAAAGAAGGGTTCTCTGAAATTGAGAGTTTTGAGAGTGAGTTCGACTCTAAGAAGCCTCT 1085 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 CAAAGAAGGGTTCTCTGAAATTGAGAGTTTTGAGAGTGAGTTCGACTCTAAGAAGCCTCT 1082 Query 1086 TTTGTCTTGA 1095 |||||||||| Sbjct 1083 TTTGTCTTGA 1092 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40791521190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5