BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47500.1
Length=1430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494222 jgi|Araly1|494222|fgenesh2_kg.8__38__AT5G47500.1 1923 0.0
> Ahg494222 jgi|Araly1|494222|fgenesh2_kg.8__38__AT5G47500.1
Length=1330
Score = 1923 bits (1041), Expect = 0.0
Identities = 1126/1168 (96%), Gaps = 2/1168 (0%)
Strand=Plus/Plus
Query 2 ATTTACTTACTCCGACCGTTTCCTTTCTCACAAGCCAATGGCGCAACTTACTAATTCCCT 61
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATTTACTTACTCCGACCGTTTCCTTTCTCACAATCCAATGGCGCAACTTACTAATTCCCT 60
Query 62 CAATTATCTCTTTTCTGTTTCTCTCTTATTATTTGTATCGTTCCACTGCTTATGTTTTCG 121
|||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CAATTATCTCTTTTATGTTTCCCTCTTATTATTTGTATCATTCCACTGCTTATGTTTTCG 120
Query 122 TTTTTCGTTGGTTGCAGCTTGTTCAAACTCCACTGACGATCAACAGATTCAACACCATCA 181
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 TTTTTCTTTGGTTGCAGCTTGTTCAAACTCCACCGACGATCAACAGATTCAACACCATCA 180
Query 182 CCACCGGAAATGGGTTGGTCCCTCAGGCCACAAAGTCATCACCGTCTCACTTAACGGCCA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCACCGGAAATGGGTTGGTCCCTCAGGCCACAAAGTCATCACCGTCTCACTTAACGGCCA 240
Query 242 CGCTCAG-TTTCGCTCCGTCCAAGACGCTGTGGATTCCATACCAAAGAACAATAACAAGA 300
||||| | ||||||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct 241 CGCTC-GCTTTCGCTCCGTCCAAGACGCTGTCGACTCCATACCAAAGAACAATAACATGA 299
Query 301 GCATCACAATCAAGATTGCTCCCGGATTTTACAGAGAGAAAGTGGTGGTTCCAGCTACAA 360
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 GCATCACTATCAAGATTGCTCCCGGATTTTACAGAGAGAAAGTGGTAGTTCCAGCTACAA 359
Query 361 AACCGTACATAACGTTCAAAGGAGCTGGTAGGGATGTGACCGCTATAGAGTGGCACGACC 420
||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||
Sbjct 360 AACCGTACATAACGTTCAAAGGAGCGGGTCGGGATGTGACGGCTATAGAGTGGCACGACC 419
Query 421 GTGCGTCCGACCTTGGCGCTAACGGTCAACAGTTACGTACCTATCAAACCGCTTCCGTCA 480
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 GTGCGTCCGACCTTGGTGCTAACGGTCAACAGTTACGTACTTATCAAACCGCTTCCGTCA 479
Query 481 CCGTCTACGCTAATTATTTCACCGCTAGAAACATTAGCTTCACGAATACTGCGCCGGCTC 540
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTGTCTACGCTAACTATTTCACCGCTAGAAACATTAGCTTCACGAATACTGCGCCGGCTC 539
Query 541 CATTGCCGGGGATGCAAGGGTGGCAAGCGGTGGCGTTTAGGATCTCCGGCGACAAAGCTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CATTGCCGGGGATGCAAGGGTGGCAAGCGGTGGCGTTTAGGATCTCCGGCGACAAAGCTT 599
Query 601 TCTTTTCCGGCTGCGGGTTTTACGGTGCACAAGACACTTTATGCGACGATGCTGGCCGTC 660
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 600 TCTTTTCCGGCTGCGGGTTTTATGGTGCACAAGACACTTTATGTGACGATGCTGGCCGTC 659
Query 661 ATTACTTCAAGGAGTGTTACATTGAAGGCTCTATCGACTTTATCTTTGGTAATGGCCGCT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 660 ATTACTTCAAGGAGTGTTACATTGAAGGCTCTATCGACTTTATCTTTGGTAACGGCCGCT 719
Query 721 CCATGTATAAAGATTGTGAGTTGCATTCGATAGCGTCAAGATTCGGGTCGATAGCGGCGC 780
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 720 CCATGTATAAAGATTGTGAATTGCATTCGATAGCGTCTAGATTCGGGTCGATAGCGGCGC 779
Query 781 ATGGTAGGACATGCCCGGAAGAGAAAACGGGTTTCGCGTTCGTGGGTTGTCGGGTAACAG 840
| || |||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 780 ACGGGAGGACATGCCCGGAGGAGAAAACGGGGTTCGCGTTCGTTGGTTGTCGGGTTACAG 839
Query 841 GTACGGGTCCATTGTATGTGGGCCGGGCCATGGGACAATACTCACGTATCGTTTACGCCT 900
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 GTACGGGTCCGTTGTACGTGGGACGGGCCATGGGACAATACTCACGTATCGTTTACGCCT 899
Query 901 ACACTTACTTTGATGCTCTCGTCGCTCACGGTGGTTGGGACGATTGGGACCACAAATCCA 960
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 900 ACACCTACTTTGATGCTCTCGTCGCTCACGGTGGCTGGGACGATTGGGATCACAAATCCA 959
Query 961 ACAAAAGCAAGACGGCATTTTTCGGAGTGTACAATTGCTATGGGCCAGGAGCAGCAGCGA 1020
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACAAAAGCAAGACGGCGTTTTTCGGAGTGTACAATTGCTATGGGCCAGGAGCAGCAGCGA 1019
Query 1021 CGAGAGGCGTGTCTTGGGCTAGAGCTTTGGACTATGAATCGGCCCATCCATTTATCGCTA 1080
||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1020 CGAGAGGCGTGTCATGGGCTAGAGCGTTGGACTATGAATCGGCCCATCCGTTTATAGCTA 1079
Query 1081 AGAGCTTCGTTAATGGGAGACATTGGATCGCTCCTCGAGATGCTTAACCAACTTCAAACC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGAGCTTCGTTAATGGGAGACATTGGATCGCTCCTCGAGATGCTTAACCAACTTCAAACC 1139
Query 1141 TTGGCGGGGTTTCTTTTCCTAATTCCTC 1168
||||||||||||||||||||||||||||
Sbjct 1140 TTGGCGGGGTTTCTTTTCCTAATTCCTC 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53478703980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5