BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47510.1
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494221 jgi|Araly1|494221|fgenesh2_kg.8__37__AT5G47510.1 1513 0.0
> Ahg494221 jgi|Araly1|494221|fgenesh2_kg.8__37__AT5G47510.1
Length=1103
Score = 1513 bits (819), Expect = 0.0
Identities = 993/1075 (92%), Gaps = 19/1075 (2%)
Strand=Plus/Plus
Query 67 AATAATGAAGAGATGGTTGAAGCGTTTCGTAACTTGCTTCTCCTCCATGGCCACTTACCT 126
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 40 AATAATGAAGATATGGTTGAAGCGTTTCGTAACTTGCTTCTCCTCCATGGCCACTTACCT 99
Query 127 GATAAGCACGGGGATCATAATACACTTCGCAGGTTTCTTAAAATGAGAGATTTTGATCTG 186
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 100 TCCAAGCACGGAGATCATAATACACTTCGCAGGTTTCTAAAAATGAGAGATTTTGATCTG 159
Query 187 GAGAAATCTAAAGAGGCTTTTCTCAATTATATGAAGTGGCGAGTGGACTATAAAGTGGAT 246
|||||||| ||||| || |||||||||||||| |||||||||||||| | ||||||||||
Sbjct 160 GAGAAATCCAAAGATGCGTTTCTCAATTATATCAAGTGGCGAGTGGATTCTAAAGTGGAT 219
Query 247 TTGATCTCTCAGAAGTTTAAGTTTGAGGAATATGGTGAAGTCAAGAAACATTACCCTCAT 306
|| |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 220 TTCATCTCTCAGACGTTTAAGTTTGAGGAATATGGTGAAGTGAAGAAGCATTACCCTCAT 279
Query 307 GGGTTTCATAAGGTAGACAAAACTGGTAGGCCTATTTACATTGAGAGACTCGGGATGACT 366
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 280 GGGTTTCATAAGGTTGACAAAACTGGTAGGCCAATTTACATTGAGAGACTCGGGATGGCT 339
Query 367 GACCTTAACGCGTTTCTCAAAGCAACCACCATTGAGAGATATGTTAACTATCATATCAAA 426
||||| | ||||||||| ||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 340 GACCTGACCGCGTTTCTTAAAGCAACCACCATTGACAGATATGTTAAGTATCATATTAAA 399
Query 427 GAACAAGAGAAAACAATGAGCTTGAGATATCCAGCATGTTCAATTGCTTCAGATAAGCAT 486
|||||||||||||| ||| ||| ||||||||||| ||||| |||||| |||| ||||||
Sbjct 400 GAACAAGAGAAAACGCTGACCTTCAGATATCCAGCTTGTTCTATTGCTGCAGACAAGCAT 459
Query 487 GTTTCGTCAACAACAACCATATTGGATGTCTCTGGAGTGGGAATGTCAAACTTCTCAAAA 546
|||||||| || || ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 460 GTTTCGTCTACCACTACCATTTTGGATGTCTCTGGAATGGGAATGTCAAACTTCTCAAAA 519
Query 547 CCTGCGAGATCCCTCTTTATGGAAATTCAAAAGATAGACAGCAACTACTACCCTGAGACT 606
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 520 CCTGCGAGATCTCTCTTCATGGAAATTCAGAAGATAGACAGCAACTACTACCCTGAGACT 579
Query 607 TTGCATCGCCTCTTCGTTGTCAATGCCAGTTCTGGATTCCGGATGTTGTGGCTTGCACTC 666
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 580 TTGCATCGCCTCTTCGTTGTCAATGCAAGTTCTGGATTCCGGATGCTGTGGCTTGCACTC 639
Query 667 AAGACCTTTCTTGATGCTCGGACATTGGCCAAAGTTCAAGTGCTAGGACCCAATTACCTT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 AAGACCTTTCTTGATGCTCGGACATTGGCCAAAGTTCAAGTGCTAGGACCCAATTACCTT 699
Query 727 GGAGAGCTACTTGAAGCAATAGAACCAAGCAACTTACCAACATTTCTTGGAGGAAATTGC 786
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 700 GGAGAACTACTTGAAGCAATAGATCCAAGCAACTTACCAACATTTCTTGGAGGAAACTGC 759
Query 787 ACCTGTTCAGATCATGGAGGCTGTCTTTTCAGTGATGAAGGACCTTGGAATGATCCAGGC 846
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 760 ACCTGTTCAGATCATGGAGGCTGTCTTTTTAGCGATGAAGGACCTTGGAATGATCCAGAC 819
Query 847 ATCAAGGAAAAGATCGAGGAGCCTTCCACAATCGAAGATGCTCATTCAGAGACTATGGAT 906
|||||| |||||||| |||||||||||||||||| ||||||| ||||||||| |||||||
Sbjct 820 ATCAAGAAAAAGATCCAGGAGCCTTCCACAATCGGAGATGCTGATTCAGAGAGTATGGAT 879
Query 907 AAAGTCTCAGAAAATGCTCCAGCCAATCAAAAGGAAAGTTTAGGCGAGGTCATGATTACA 966
||||||||||||||||| |||||||||||||| |||||| |||| || |||||||||||
Sbjct 880 AAAGTCTCAGAAAATGCCCCAGCCAATCAAAAAGAAAGTACAGGCAAGATCATGATTACA 939
Query 967 ATGGAGAAGTATGCTGCCCTGAAAACTGCTGTCAAGGATTCCCAGAAGAG-GA--T--A- 1020
||||||||||||||||||||||||||||||||||||||||||||||| | || | |
Sbjct 940 TTGGAGAAGTATGCTGCCCTGAAAACTGCTGTCAAGGATTCCCAGAAG-GTGAAATTGAT 998
Query 1021 -GAAATGTTGGAAATATCACTCCATGAGACTAAAAAGGTCTTGAATGGACTCGCGGAGAT 1079
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 999 TGAAATGTTGGAGATATCACTCCATGAGACAAAAAAGGTCTTGAATGGACTCGCGGAGAT 1058
Query 1080 CATTGAGGCCATTCAACCGAATCAACCTATA-ACCAAATGCAAACCGGTTTAGAA 1133
|||||| | | | ||||||||||||| || ||||||||||||||||||||
Sbjct 1059 CATTGA----A--C--C-GAATCAACCTATAGAC-AAATGCAAACCGGTTTAGAA 1103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44336952471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5