BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47520.1
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494220 jgi|Araly1|494220|fgenesh2_kg.8__36__AT5G47520.1 1685 0.0
Ahg940897 jgi|Araly1|940897|scaffold_601441.1 339 4e-92
Ahg936118 jgi|Araly1|936118|scaffold_500309.1 339 4e-92
Ahg900070 jgi|Araly1|900070|Al_scaffold_0004_720 339 4e-92
> Ahg494220 jgi|Araly1|494220|fgenesh2_kg.8__36__AT5G47520.1
Length=1093
Score = 1685 bits (912), Expect = 0.0
Identities = 1046/1108 (94%), Gaps = 20/1108 (2%)
Strand=Plus/Plus
Query 20 CTGCGTGTCTTTGATTTCCCAGAAGA-AGGCGTTGAATCCTTTCGTTTTCCGATTCCATT 78
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 1 CTGCGTGTCTTTGATTTCCCAGAAGAGAAGCGTTGAATCCTTTCGTTTTCCGATTCCA-T 59
Query 79 TTTGGGATCTCTTGTTTCGTTTTCTTCTCTTTGGATCCATTCCATTCCCATGTTCCCCAA 138
||||||||||||||||||| ||||||| |||||| | |||||| | ||||||
Sbjct 60 TTTGGGATCTCTTGTTTCG-TTTCTTCCCTTTGG----A-TCCATT--C-----CCCCAA 106
Query 139 TTTCTTTAATCGGTGTTGCTTCCACAAGGCTTCATGAGCTTGTATAACAAGTTTCTCTAG 198
|||||| ||||| ||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 107 TTTCTTAAATCGTTGTTGCTTCTACAAGGCTTAATGAGCTTGTATAACAAGTTTCTCTAG 166
Query 199 GAGGTGTTAAAGAGCCAGATCAAGCTTTCAGAAGAGATTTTCTTAGGGTGGTTGAGAGCT 258
|||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 167 GAGGTGTTTAAGGGCCAGATCCAGCTTTCAGAAGAGATTTTCTTGGGGTGGTTGAGAGCT 226
Query 259 GAAAGTTTTGATATTTAGTCAACTTTGTTCCACTGAACCTTCTAGGAAGCTACCTCAAGT 318
||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 227 GAAAGTTTTGAAATTTAGTCAACTTTGCTCCACAGAACCTTCTAGGAAGCTACCTCAAGT 286
Query 319 AGACAGCTTTGTTGACGGGCTTCAAGCCAGTGGTAAAGATATGCTTCTGTAGAAGGGTTA 378
|||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |
Sbjct 287 AGACAGCTTTGTTGACAGGCTACAAGCCAGTGGTAAAGATATGTTTCTGTAGAAGGGGTG 346
Query 379 ATCTTGAGCAT-TAAAGGACATGGCTTTCTACTCTGAAGACGACAAGAGCGAAGACTACC 437
|||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 347 ATCTCGAGCATATAAAGGAGATGGCTTTCTACTCTGAAGACGACAAGAGCGAAGACTACC 406
Query 438 TCTTTAAGATTGTTCTAATCGGTGATTCTGCTGTCGGGAAATCAAATTTACTTGCCAGAT 497
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 407 TCTTTAAGATTGTTCTAATCGGTGATTCTGCTGTGGGGAAATCAAATTTGCTTGCCAGAT 466
Query 498 TTGCGAGGGATGAGTTCTATCCCAATTCAAAGTCGACGATTGGAGTGGAGTTTCAGACAC 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TTGCGAGGGATGAGTTCTATCCCAATTCAAAGTCGACGATTGGAGTGGAGTTTCAGACAC 526
Query 558 AGAAGATGGATATAAACGGGAAGGAGATCAAAGCACAGATATGGGACACAGCAGGTCAAG 617
||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||
Sbjct 527 AGAAGATGGATATTAATGGAAAGGAGATCAAAGCACAGATATGGGACACAGCGGGTCAAG 586
Query 618 AACGTTTTAGAGCAGTCACTTCTGCATATTACCGAGGTGCAGTTGGAGCTCTTCTGGTTT 677
||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 587 AACGTTTCAGAGCAGTCACTTCTGCGTATTACCGAGGTGCAGTAGGAGCTCTTCTGGTTT 646
Query 678 ACGATATCAGCAGACGGCAGACTTTTCACAGCATTGGTAGATGGCTCAACGAGCTACACA 737
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 ACGACATCAGCAGACGGCAGACTTTTCACAGCATTGGTAGATGGCTCAACGAGCTACACA 706
Query 738 CACACTCTGATATGAATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CACACTCTGATATGAATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT 766
Query 798 TGAGAGAAGTGTCAACAGCGGAAGGGAAGGCATTGGCTGAAGCACAAGGTCTTTTCTTCA 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TGAGAGAAGTGTCAACAGCGGAAGGGAAGGCATTGGCTGAAGCACAAGGTCTTTTCTTCA 826
Query 858 TGGAGACATCGGCTTTGGACTCATCAAACGTGGCAGCTGCATTTGAGACGGTTGTGAAGG 917
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 827 TGGAGACATCGGCTCTGGACTCATCAAACGTGGCAGCTGCGTTTGAGACGGTTGTGAAGG 886
Query 918 AGATATACAACATACTGAGCAGGAAAGTGATGAGCTCACAGGAGCTAAACAAGCAAGACC 977
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 887 AGATATACAACATACTGAGCAGGAAAGTGATGAGCTCACAGGAGCTAAACAAGCAAGATC 946
Query 978 CTGCTTCACTGAGCAATGGCAAGAAAGTTGTGATACCATCAGACGGGCAGGGCGAGTTCA 1037
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||
Sbjct 947 CTGCTTCACTCAGCAATGGCAAGAAAGTTGTGATTCCATCAGATGGGCAGGGCGAGTCCA 1006
Query 1038 AGAAAGGTGGATGTTGTTCTTCTTGATAGAAAACTGAAATTGTAGAGAGCTTAAAAAGGA 1097
||||||||||||| |||||||||||||||||| || |||||||||||||||| |||||||
Sbjct 1007 AGAAAGGTGGATGCTGTTCTTCTTGATAGAAA-CTAAAATTGTAGAGAGCTTTAAAAGGA 1065
Query 1098 AG---ACTATTGATCATCTGTTTGATTG 1122
|| | ||||||||||||||| |||||
Sbjct 1066 AGGTTATTATTGATCATCTGTTCGATTG 1093
> Ahg940897 jgi|Araly1|940897|scaffold_601441.1
Length=283
Score = 339 bits (183), Expect = 4e-92
Identities = 194/199 (97%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 738 CACACTCTGATATGAATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT 797
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 CACACTCTGAT-T-AATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT 114
Query 798 TGAGAGAAGTGTCAACAGCGGAAGGGAAGGCATTGGCTGAAGCACAAGGTCTTTTCTTCA 857
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 115 TGAGAGAAGTGTCAACAGCGGAAGGGAAGTCATTGGCTGAAGCACAAGGTCTTTTCTTCA 174
Query 858 TGGAGACATCGGCTTTGGACTCATCAAACGTGGCAGCTGCATTTGAGACGGTTGTGAAGG 917
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 175 TGGAGACATCGACTTTGGACTCATCAAACGTGGCAGCTGCGTTTGAGACGGTTGTGAAGG 234
Query 918 AGATATACAACATACTGAG 936
|||||||||||||||||||
Sbjct 235 AGATATACAACATACTGAG 253
> Ahg936118 jgi|Araly1|936118|scaffold_500309.1
Length=283
Score = 339 bits (183), Expect = 4e-92
Identities = 194/199 (97%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 738 CACACTCTGATATGAATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT 797
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 CACACTCTGAT-T-AATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT 114
Query 798 TGAGAGAAGTGTCAACAGCGGAAGGGAAGGCATTGGCTGAAGCACAAGGTCTTTTCTTCA 857
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 115 TGAGAGAAGTGTCAACAGCGGAAGGGAAGTCATTGGCTGAAGCACAAGGTCTTTTCTTCA 174
Query 858 TGGAGACATCGGCTTTGGACTCATCAAACGTGGCAGCTGCATTTGAGACGGTTGTGAAGG 917
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 175 TGGAGACATCGACTTTGGACTCATCAAACGTGGCAGCTGCGTTTGAGACGGTTGTGAAGG 234
Query 918 AGATATACAACATACTGAG 936
|||||||||||||||||||
Sbjct 235 AGATATACAACATACTGAG 253
> Ahg900070 jgi|Araly1|900070|Al_scaffold_0004_720
Length=210
Score = 339 bits (183), Expect = 4e-92
Identities = 194/199 (97%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 738 CACACTCTGATATGAATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT 797
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 CACACTCTGAT-T-AATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT 61
Query 798 TGAGAGAAGTGTCAACAGCGGAAGGGAAGGCATTGGCTGAAGCACAAGGTCTTTTCTTCA 857
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 62 TGAGAGAAGTGTCAACAGCGGAAGGGAAGTCATTGGCTGAAGCACAAGGTCTTTTCTTCA 121
Query 858 TGGAGACATCGGCTTTGGACTCATCAAACGTGGCAGCTGCATTTGAGACGGTTGTGAAGG 917
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 122 TGGAGACATCGACTTTGGACTCATCAAACGTGGCAGCTGCGTTTGAGACGGTTGTGAAGG 181
Query 918 AGATATACAACATACTGAG 936
|||||||||||||||||||
Sbjct 182 AGATATACAACATACTGAG 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48530473341
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5